Array 1 611039-611668 **** Predicted by CRISPRDetect 2.4 *** >NZ_KV575208.1 Enterobacter roggenkampii strain PDA134 scaffold2_size915295, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 611039 28 100.0 33 ............................ TTTATAAAAATTCCATGTTAGAATGCGCCTGAA 611100 28 100.0 32 ............................ TGTCCGGAGGCGATGATATTGAATACACACCG 611160 28 100.0 32 ............................ TCAAGGGTAGGTAGTTTTGTTGCGAAAGAAAT 611220 28 100.0 32 ............................ GCAACTGGCAACACGCTGGCGTCCCAGTCAAC 611280 28 100.0 32 ............................ CCGATCCCCTCGCGTCCCAGCGTGCTTTCACA 611340 28 100.0 32 ............................ ACGCTGTAACGTCTGACACTATTCAGGCTGTA 611400 28 100.0 32 ............................ ATATGAACGCCGAACCCGCAGAACATGCAGCC 611460 28 100.0 33 ............................ ATGTACCGGATTCATGATCGCCGCTGAAATCAT 611521 28 100.0 32 ............................ CGCAAGTTGCTGAAACAATCGACCCCGGACGC 611581 28 100.0 32 ............................ ATCAAGCGCATCAGTTACACCGCCCGCAAGAC 611641 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================= ================== 11 28 100.0 32 GTTCACTGCCGTACAGGCAGCTTAGAAA # Left flank : ACGGTTTGCATAAGCTGTTTGGTGGGGTGGGCTTTATCAGCGGCATGCTGGTGGAGAAAGGGCTGCCGGGGTTTATTGCCTACGGCGTGTTGATTGGCGAAGTGGTGGCGCCGATCCTGATTATTGTCGGGCTCTTTACGCGCCCGGCCGCGCTGGTGCTGGCATTTACGATGATCGTGGCGTGGCTGATGGTGGGATTGGATGAGACATTCGCGCTCGACAAGGTCGGCGCATGGGCGATTGAAAGCCTGGTGTACTTCTTTATCGGCTCGCTGGCGGTGGCGTTTTTAGGGGCAGGGCGGTTTGCGCTGGGGAAAACACCTGCGTGGCGGTAGGGGTTGGAATCTGTTCCGAGGGAAGGGGTCTACGGACCCTTTTTTATTGGTGAGTTTTAAGTTGTTGATTTCACAACGGTGAATTGTTGGTGATGAAAAAAGGGTTTACGGAGAATTTTAGAGGGATTTCTTTATATCACAAGAAGATAGGTGTAGATTGTTCCA # Right flank : AGCACTTCAGCCGGGTAAGCGTCGGTGGTTAGGGTCCAATGCCGAACACGCAGTAGGCACAACGTAGGCCGGGTAAACGCAGTGCCACCCGGCAAAAAAGCCCGGTGGCGCTGACGCTTACCGGGCCTACGAACGAACGTTTATTGCTTATGCGAGGACCAAATCCCCCTGCGGATGGCACGAGCACGCCAGCACGTAACCCTCGGCAATCTCCGCGTCGGACAGCGTCATGGTGCTGGTGACGGCGTACTCCCCGGAAACCACCTTTGTTTTACAGCAGCCGCACACCCCGGCACGACAGGCCGCCGCCACCGGCACGTTGTTGCTTTCCAGCGCCTCCAGCAGCGTCGTGCCCACGCGGCCAAAGAAGGTCTGCGCAGGCTGCAGTTTAGTGAACTGAATCCCGCTGGTTGCCGCTTCCGCCACCGGCGTGAAGAACTGCTCTTTGAAGAAACGGGTCACGCCTAGCGCTTTCACTTCTTCTTCCACGATAGCCATGT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [66.7-40.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.51,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 626693-627622 **** Predicted by CRISPRDetect 2.4 *** >NZ_KV575208.1 Enterobacter roggenkampii strain PDA134 scaffold2_size915295, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 626693 28 100.0 33 ............................ GCCCTGCGGAATGTACCACCAGCGATCAATAAT 626754 28 100.0 33 ............................ GATGGAAGATGGCCAGACGCGCGGTGACAACAT 626815 28 100.0 32 ............................ AGCCATTCGAGACAGCGGTACTGTTTCCCGCC 626875 28 100.0 32 ............................ AACGACACACGACCCGCGCCGCGCTGAAAAGC 626935 28 100.0 32 ............................ GGATGAAGCTGCGGAGCGCGTCGCGCAGGCCC 626995 28 100.0 32 ............................ CGACGCGTTCCCGCGTGAGAAAAAACGCCGCC 627055 28 100.0 32 ............................ AGCACGTCTGCTGCGGTGATATCGTTAATACT 627115 28 96.4 32 ..........T................. TGCGCAAACCTCAGTCATAGGAGCGGTTAGCG 627175 28 100.0 32 ............................ GTTATACGTCCCCCGGTCAGCCGGGCAGCATT 627235 28 100.0 32 ............................ ATACGCGTGGACGACGGGCTTCAGGCGAGTTC 627295 28 100.0 32 ............................ TACCCGAAATGTGACTATAAGAATCACTCTCT 627355 28 100.0 32 ............................ TACAGCGTCTGAATAAGTGCCCCGATACTTCT 627415 28 100.0 32 ............................ CGATAGGTTTGTTGTGCCTGTGCTGCCACAAA 627475 28 100.0 32 ............................ CGCACTTATGGCGAGTGGTAAAGATTGAAAGG 627535 28 89.3 32 .........T.....A....G....... AATGAGCAACATCGACAAACAGGCGCTACACA 627595 28 78.6 0 ...........C.........AC.ACT. | ========== ====== ====== ====== ============================ ================================= ================== 16 28 97.8 32 GTTCACTGCCGTACAGGCAGCTTAGAAA # Left flank : TACTCCCACAAACGCAGCCCGTATGTCGTTGCCTAGGGGCTTATCTGGAAGAGGTAAAATCCGGACTCACAGAATCTATGCGTGATTTTCAGGTGGTGGAATTTGCGGACGAAGCAGAACAACCGCGACAAAAAGAGAGGCTGCTGGAAGACACCGAAACGAAATGTGATTACTGCCGGGCGTTGAATCATGTGCTGCTGGTGTCGCATTTTGATCCCGATATGCTGCCGCACCTTACAGGGCTACTCCATGACATTACGCATTCTATGGCCGCAGATGTCGTTGCACCTCAACGTGCAGAAACGGTAGTTCACATTATTTCCTGAATTTAGTTTGTGGCGTCGGGGATAATCCCTGGACGCCACTGGCTTGACCCTTTTTTGATGATTGCGTAACCTTTTGATTTATATAATGCGAATTTACTAACCAGAAAAAAGGGTTTTATGCGGGAAAGTTGATTATTTTCTTTTCTAACAATAAGATGGCGTAGTTTCCTTTCA # Right flank : AAAAACGACTCTCTAAAACATTCAGCTTACCTATTTAAAACTTAATACGATCAAACCCACATTCTTTATTTTTCGCAATAAATAAAAAATTCATTCACATACCAATTATATTCCAATGAATATATTGTTCGTAAAAATAATGCATTAAATGGAAAAGTGATTTTTCACTTTATTATCACGGCAATTACTCTTCATTTGATACCCGTCACATTTGTTTTCATCTTATCTTCGATAACATACCGCGCATTCAACACTTTGAAATAAAAGCCCTTGCTATGTCCGTAAACAGCATCACTCCAACAGACTTAAAAACCATCCTGCATTCAAAGCGCGCCAATATTTATTACCTGGAAAAATGTCGCATCCAGGTGAATGGCGGGCGTGTTGAATATGTCACCCAGGAAGGCAAGGAGTCGTTTTACTGGAATATTCCCATCGCGAATACCACGGCAGTGATGCTGGGAATGGGAACATCCGTTACACAAATGGCAATGCGGGAG # Questionable array : NO Score: 6.15 # Score Detail : 1:0, 2:3, 3:0, 4:0.89, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-9] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [68.3-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 3 637119-637986 **** Predicted by CRISPRDetect 2.4 *** >NZ_KV575208.1 Enterobacter roggenkampii strain PDA134 scaffold2_size915295, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 637119 28 100.0 32 ............................ ACCAGCCCATCGGATCGGGCGCGTTATCGTCG 637179 28 100.0 32 ............................ AAAGTCAACGACATGGGAGCCGACACGCAGAA 637239 28 100.0 32 ............................ TGTTTACCGGAGAGAGTCCGGGTAACGCTGTA 637299 28 100.0 32 ............................ TTTCAACGACTGACACACGGTCAGGCGTCGCG 637359 28 100.0 32 ............................ CAGCGCCCTCATGAGCTTGATTTGCTCATTCA 637419 28 100.0 32 ............................ CGGTCGCCTGCAATATCACTGACGGACACGCC 637479 28 100.0 32 ............................ CGGCGCACGTACCATAGATTCATCATACGGGC 637539 28 100.0 32 ............................ TGTACCGGCGTTGGACTTACTCCGCAAGCTAT 637599 28 100.0 32 ............................ AAGGTCTTTTAACGGCTCTGCCAGGGCGTTTG 637659 28 100.0 32 ............................ TCCATAGGGAAGCTGACCACCCGCCAGTTTTC 637719 28 100.0 32 ............................ TGTACCAGACCATCACTCAGTGGGGTGAGCTG 637779 28 100.0 32 ............................ AAAAGCGTCTGCAGCAGTCAGCAAAAATGATT 637839 28 100.0 32 ............................ GCTGGAATCAAAGTGATGGAGTGAGTATAAGG 637899 28 85.7 31 A..........C...C......C..... ATAGAAAATAAGGCCTAACAGTCCTCGGACC C [637923] 637959 28 75.0 0 ........T..A....A....CCT...G | ========== ====== ====== ====== ============================ ================================ ================== 15 28 97.4 32 GTGCACTGCCGTACAGGCAGCTTAGAAA # Left flank : AACGGGCCACGCGTTCGCTCTCGTCGGGCGTTAACGTCCGTCCCGCGCTTTTGCGGCGGGCCACGTTACGTTCGTTGATACCCGTGACACGCAAAATGTCCGCTTTCGACATGGACGTCCACTCGTGGATGTTGTCGAGCACACTGACGGGTAATCCCTGATTGAGAAATTCAATCAACCGCATACCTCGGTTGGCGGGTAAACCGGCGTAACGCCAAAGTGCGTTATCAGCAGGTTTCTGTGCGGGGATCCATGTTCTCATGTCACCTCCTGAGTAATGTCATTTGTCATGGGTAAGTATAGCCATTTGTCATGGTGGATGGAATCGGTGTTTTTGTGAGGGGGATTGATGCGAAGAAAGGTGTTTTGACCCTAATTTTTAGCGTTTGTGTAATTTATTGATTTTAAATGAGTATTCTTGGTGGGTAAAAAAGAGGGTTAGAGAGGGTTTTTTAGCTTTTTTTGTATGCAAATCAGAAGGGTGTGGGGATATTATTTCA # Right flank : GCTGGAACGAACGGCTAAATTATTGTTCAAATAATCGACCGCACCACAAAAAAATAAAGCCGGGAAAACCCCGGCCTTATTTAATATTCATCTGCCATTACAGGCGAAAACAATTAGCGACTACGGAAGACAATGCGGCCTTTGCTCAGGTCGTACGGGGTCAGTTCAACAGTCACTTTGTCGCCCGTCAAAATGCGGATGTAGTTTTTGCGCATTTTACCGGAGATGTGCGCAGTTACCACGTGACCGTTTTCCAGCTCTACGCGAAACATGGTATTAGGTAACGTATCAAGTACGGTACCCTGCATTTCAATATTGTCTTCTTTGGCCATCTAATCCTCTGGGGTATCACTACCAAGTTTTGAACCGGCAAGATAATGCCGAAATTCATCAATTAAGTAAAGAATTGCGCGTTTGAAACGCAGCAAAACAGTTTCGGCGCATTGCCCAAGCGTCACGGTACAACCGAACGGAAAGCGCATTCGTAAAGGGGATACAAC # Questionable array : NO Score: 6.13 # Score Detail : 1:0, 2:3, 3:0, 4:0.87, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-12] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [65.0-61.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //