Array 1 410200-411144 **** Predicted by CRISPRDetect 2.4 *** >NZ_CM001979.1 Dickeya sp. NCPPB 3274 chromosome, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 410200 29 100.0 32 ............................. GTCGGTCCCCGTGGTAATTTCACCAGGTTCAA 410261 29 100.0 32 ............................. CCTCCATAGTGCGCACGCTGGGTGATGCTGAC 410322 29 100.0 32 ............................. ACGATATCCGCAGGCAGTTCAGCAGCAGATTG 410383 29 100.0 32 ............................. TCCCCGATCTCAAGGCAGGCGTGTGATTGCGC 410444 29 100.0 32 ............................. TGGAGAGCATGAGAGTGGGCTATAGCGAGCAG 410505 29 96.6 32 ..............G.............. CAACACTAGAGGTCGCGTCAGCGGAAATCGGG 410566 29 100.0 32 ............................. TAAAGGCGTTAGTTTCATTATTCAATTCCTCT 410627 29 100.0 32 ............................. AATCAATGGTTTGAATATTTTTATTAGTTGAC 410688 29 100.0 32 ............................. GAGCTGGATTGCGTCGTGCTGCTACTGACACA 410749 29 100.0 32 ............................. CGGAGTTGCGACACAAGGCCGGTGGAGAGCTG 410810 29 100.0 32 ............................. TCAATTAACTTACCCAGTCCGTTGAGGCGGAA 410871 29 96.6 33 ............T................ TGGATGGTGTGAAGTACAAGGTCACTGCCGAAC 410933 29 100.0 32 ............................. ACGGCGCAAGCCCTGATGATCTGCTGGCGGGC 410994 29 100.0 32 ............................. GCGAGCGTTTTCAGTCACTACTCATTGCATCA 411055 29 100.0 32 ............................. TCCTTGTAGTCGCCGGTTCGACTGGCCCAGAT 411116 29 96.6 0 ............................A | ========== ====== ====== ====== ============================= ================================= ================== 16 29 99.4 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : CTGATTGAAGACGTGCTGGCCGCCGGTGAGATAGAGCCGCCACAGGCGCCGCCGGACGCGCAACCGCCCGCCATTCCCGAGCCGACGCCGTTTGGCGACGCCGGTCACCGGGGGCATGGCGGATGAGTATGCTGGTGGTGGTCACCGAGAACGTGCCGCCGCGCCTGCGCGGTCGGCTGGCGGTCTGGCTGCTGGAAGTGCGCGCCGGCGTATATGTGGGCGACACCTCGCGTCGGGTGCGGGAAATGATCTGGCAGCAGGTAGTGGAACTGGCGGAGCAGGGCAACGTGGTGATGGCCTGGGCCACCAATACCGAATCCGGTTTTGAGTTCCAGACCTTCGGTGAAAACCGTCGGATGCCGGTGGACCTCGACGGACTGCGGTTAGTCTCATTTCACCCTGTTGAAAATCAATAGGTTAGCGTTCTTTAACAACCGGGTAAAATCGGTGGAATTTTCCTGCCTTTAAAATGCCTTATAAAACAGGTATATACTTTTAGA # Right flank : ATGCACCTCTGCGCTGCGGTTGCTTGTCGAACTTGGTGTTGTTTCGTTTATTTCGTTTGCTGTGCTTTTCGTTTATTTCGTATAGTCTGATTGCAACCGTTACGGTTATCACTAGACCTCAAACTGAAAATGGAATACCCAAAATGACAAACTCAATTCTTGATAGCCTGAGCCTTCCGGCACCAGGGGAGATTGAGGCGGCTGTTCGTGGACAAAGGGAGCTTGCTGCCTATCTCTCCACAAAGATGGAGACACAAAAAATCTCGATTCAGGACGCAGATAACAACACTCGTCAGGTCGAATTGCCGACGTCGGCACTGACATTATTGATGTCGATTTTAGGCGAGCTGGCTGTGGGTAACGCGGTTCAGGTTGTTCCTGTTCATGCTGAATTAACGACACAGGAGGCAGCCAACATTCTGAATGTTTCACGCCCTCACATGGTGAAGCTTCTGGAGGATGGGAAACTACCTTTTCATAAAACCGGTCGCCACCGCCGT # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [70.0-51.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 679474-679807 **** Predicted by CRISPRDetect 2.4 *** >NZ_CM001979.1 Dickeya sp. NCPPB 3274 chromosome, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 679474 29 100.0 32 ............................. GCCACGGTGGATATGGCGTTTAATGCTGTTTC 679535 29 100.0 32 ............................. GTTTCTATATCAAAACAAGCTCCGGTAAAGCA 679596 29 96.6 32 ..T.......................... CTCGAAGGCGAAATCAAGTGGAACAGCTTCTA 679657 29 100.0 32 ............................. TCGATGGTAAAAAACACGATGAGTGATATCGG 679718 29 100.0 32 ............................. ACATCGGCGCGATGTTGCAGGCCCAGACAGTG 679779 29 96.6 0 ............................A | ========== ====== ====== ====== ============================= ================================ ================== 6 29 98.9 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : CGGTAGAAAAATTTGAGGCTATTATTTATCAATAAGTTAGCGCTCTTTAACAACATGAAAAAGTTGGTGGAATTTTCCAGGCTTTAAAAATCATTAAAAAACAAGTATATACTTTTAGAGTGTTCCCCGCGCCAGCGGGGATAAACCGGTTATTGGCGTGCACAAAAAAATTTGACGGGCGTGTTCCCCGCGCCAGCGGGGATAAACCGGCAGAGGAAACACTGAATGCCGCAGAATCTATGTGTTCCCCGCGCCAGCGGGGATAAACCGACAGAGACTGTGCGTTATAGGCCAGACTCAGCGTGTTCCCCGCGCCAGCGGGGATAAACCGCTTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCATATGTGTTCCCCGCGCCAGCGGGGATAAACCGGGACGGCCAGGACCATTGATTTCGTACTCGGC # Right flank : AGATCGGCAGACTGGAGAAAAGAAGGCTGGTGCAGCATTAAATAAATGCCATTGCTGCCAGTTCCGCCAGGGTTTCGTCACGGTATTTGGCCATGCCGGTTTTCATTTTCCTGAAACCGAAATGTTCATAAAGGCCGACCGTGTCGGGGTGGGTGTATAAGATGATGTTGCATTGCGCTACGGTATCAATCAGTGACTGGATAATCACCCTGCCCAGCCCTTGCCCGTGGTAGCGTTTGTCCAGCGCGACATTGTATATGGCCGCCTGGCAAACGCCGTCAGAGAGAGTACGACCTACGCCGATAAGGGTATTCTGATCGAACAGGAACACGACAGAAAAACTGTTCTTGAAGATCTTTTCCTGCACGGCGGCGGCGTCTTCGCTTAAACCGTAAAATGCCAGCAGATCGGCAACACTCTGCCAGGGGATATTATTGGTGGTGGTTTCTATTCTAATCGTCATCGGGAAGCTCGTGTCAGATCGAATATTCCGGTTCATA # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [36.7-51.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0.27 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 3 4076916-4077246 **** Predicted by CRISPRDetect 2.4 *** >NZ_CM001979.1 Dickeya sp. NCPPB 3274 chromosome, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 4076916 28 100.0 32 ............................ GCGCTGAATGCGCGCGGACTCAGCCGTAATCT 4076976 28 100.0 33 ............................ AATGTCATCCCGATTTATGGTGACAATCTGCAT 4077037 28 100.0 32 ............................ GCTACCGGCTCGACCTGACGCCGGGCGTGTAC 4077097 28 100.0 32 ............................ GGTAGCGACATCCAGGCCTGAATAGCGTTATC 4077157 28 100.0 32 ............................ TGCCAATCAAGGGCGCGACTGGCATTGATAAC 4077217 28 82.1 0 ....................A...ACGG | AA [4077237] ========== ====== ====== ====== ============================ ================================= ================== 6 28 97.0 32 GTTCACTGCCGTGTAGGCAGCTTAGAAA # Left flank : CGGAAATCCCCCCCATAGCGATATCGCACTTACCGGACTGAAAATCCGGCATCAGGGTTTTCCAGCTGGTTTTTATCCACTCCACTTTCACGCCCAGGCTTTTAGCCAGCGATTGCGCCATCGCGATATCGATCCCTTCGTAATCGCCATCGGCACGCAGCGATGTGTACGGCTTATAGTCGCCGGTGGTGCACACCTTCAGCACCCCTTGTTCCTGCACCTGATCGAGATGAGACGCGGCGTTGGCGCCGCCGGCCAGCCCCAGTAACAGAATGAATGAAAACCGTTTTTTCATGATAGTTCCTTGCAAGGTCACGCCTGTCTGGCAAAAGCGTCACTGTAGCACGCCCCTTCCTCGCCCGCCGATTTTGACCTTTTTTTTTCGCCCGTTTATAACTATCTGATTTTTAAAGGTGATAACGGTCGATTAAAAAAAGGGGTTTCAGACAAAAATCCTCATTTCTCTTTTAAAATCAGCCCACCAGCGATAAATTGCTACG # Right flank : GGTTTGCTGGCGTTAAAAACTACGCTGAGGTGGGCGACTTCGCCGGATGCACGGCATGGATGCCGTGCAAGCCCGTTCCGCGCCGGGAGCGCGTAACGGGCGGTCCGAACAGCGAAGGCGAACGCCGAAGGCACCGCGTAGCGGCGTAGTTTAGCCCTCAGCCAGTGGTCAAGGAGAGGCGGCGCTGAGCCTCTCCTTAAGTCGTGCGTGCAATGAAATGGCAAAGAAACGACACCGTTTATCCCGCACGAAATGAACCACCGACCCGGCATACATTCGACAAATGATTCACTCACCAGGCATAAATCCGACAGTAGCAAAGCCGCCTTGCTGTTTACCAACAGCCCTCTCCCTTACTCCGCCGCCAGTGCGCGAACCGCCCCTCTTTTCTTTTTGATGGCATAACCGGCGGCCAGCGCCAGCAGCCAGAACGGAATCAGCCACACGGAGATCTGGATGCCCGGCGTCATCGCCATGATCACCAGAATCCCGGCCAGAAA # Questionable array : NO Score: 6.11 # Score Detail : 1:0, 2:3, 3:0, 4:0.85, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTGTAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [7,7] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGTGTAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [63.3-40.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 4 4083642-4082352 **** Predicted by CRISPRDetect 2.4 *** >NZ_CM001979.1 Dickeya sp. NCPPB 3274 chromosome, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 4083641 28 100.0 32 ............................ TCGCCGCGCTTTTGGTTAGGAGCGATACGCAC 4083581 28 100.0 32 ............................ GCATCACGGCTACTCAAGGGGGACATGAGCGT 4083521 28 100.0 32 ............................ TACGAGAAGAACAGCGACGTTATCGAAGGATA 4083461 28 100.0 31 ............................ CAGATGCCCGGCGCGCTGCGCTGATATCGTC 4083402 28 100.0 32 ............................ TACGCCATCGCTAAATCGCTGCAAAAGGCGTT 4083342 28 100.0 32 ............................ AGGTAGAAGCGGCGGCAGACGGTTTAGAAGCG 4083282 28 100.0 32 ............................ ACGTAGGTTATCTCTACGGACTTGTGCAAAGT 4083222 28 100.0 33 ............................ GTATCCGCGCCGCTACGTGGTTTATAGCTACGG 4083161 28 100.0 32 ............................ TCGGGCAGATGGCGTGTGTGTCGGCGGGCCTG 4083101 28 100.0 32 ............................ AATTGGCTGACGCTGTCGGATTGTCATATGAC 4083041 28 100.0 32 ............................ GTTCATGCGGGTCACACGATCGAGTAGTGCCA 4082981 28 100.0 32 ............................ GTATGAAAACGGCAAACCATATTTTTGCACTT 4082921 28 100.0 32 ............................ TTACGTAATGGGATTGCCATTTATGCATTCTC 4082861 28 100.0 32 ............................ TAATCCGCGTCCCGATCCGCAAAGCACGAGTG 4082801 28 100.0 32 ............................ GGTGCAATGGATTATAACGGCAGCGATGCTGA 4082741 28 100.0 32 ............................ TCGAAGCGGTCGCGGCGGCGGTTGGTATGCGC 4082681 28 100.0 32 ............................ AAGAGGTGAACGATAAAAACATTACCGTTGCT 4082621 28 100.0 32 ............................ ACGATAAGTGCCGGTAGCTATACCAACACCGC 4082561 28 96.4 32 ...........T................ CGCTCCGATGAAAACCAGCGGCAGCCGTGATG 4082501 28 92.9 33 ...........TA............... TTGCGCGGAGGGCTGGTCGTAGCGCCGCCGGTT 4082440 28 96.4 32 ............A............... GGGCGTACCGGTGGCCCAGCCGCCCCTTTAAC 4082380 27 78.6 0 .........T..A.......A..-..CG | GG [4082357] ========== ====== ====== ====== ============================ ================================= ================== 22 28 98.4 32 GTTCACTGCCGCGTAGGCAGCTTAGAAA # Left flank : AGGAGCTGGCGGCGCTGGAGCAAACCGGCTGGCTGAAAGGGCTGCGCGACTATACCGCCATCACCGAACCGCTGCCGGTGCCGGCGGGCGCGAAGCACCGCACCGTGCGCCGGGTGCAGGTGAAAAGCAGCGCCGAACGGCTGCGCCGCCGCGCGGTGAGCAAAGGCCGGATGACGGAGGATGAAGCCGCTGCCCGCATTCCCTATGCGGTGGAAAAACGCACCTCGCTGCCGTATCTGCCGCTGCGCAGCCTCTCCAACGGGCAAACGTTTTTATTGTTTGTCGAGCACGGCCCGTTGCAGGACAAACCGGTCGCCGGGGCGTTCTCCAGCTACGGGCTAAGCGCCGCCGCCACCATCCCGTGGTTTTGACCCTTTTTTTGCGGCCAGTTGTAACGTATTGATTTTTAATACCGCAATCTGGCCGCCAGAAAAAAGGGTTTTCCCGTCAAAATGGCATTTTTTCTTTAACAATCAGGTGATAAGCACGAGTTCGCTACA # Right flank : GGTTTTCTGGCGTTAAAACTACGCTGAGGTGGGCGACTTCGCCGGATGAGCGGCAGGACGCCGCGAAAGCCTGTGCCGCTCCGGGAGAGCGTCACAGGCGGTCCGAACAGCGAAGGCGAACGCCGAAGGCACCGCGTAGCGGCGTAGTTTTGCCACCTAGCCAGAGGTCAAGGAGAGGTGGCGCTTGCACCTCTCATTGTCGTGCGTGCGATGATGTGGCAAAGAAGCGACTCGGTTTATCCCGCACGAAATGAACCACCAACCCGGCATATATGCGACAAATGATTCACTCACCTGCCTGATATATATCGCTAATCAATAACAAGACACCCTGGCTGTGTGTCAACAGCCCCATTCCTGCACAGGAATAAAAAAATCCCCCGGCCGTTACCGGCTGGGGGAAAAGGCGTAAAAAAGTGAAAGGAATAACTTACTGTACGGCAGCGAATGCGGCAGCCACGCGCTGCACGTTGTGATGGTTTAAACCGGCGATGCAGATA # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCGTAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,7] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCGCTGCCGCGTAGGCAGCTTAGAAA with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [36.7-61.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 5 4092598-4092925 **** Predicted by CRISPRDetect 2.4 *** >NZ_CM001979.1 Dickeya sp. NCPPB 3274 chromosome, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 4092598 28 100.0 32 ............................ ACCATCTGCCACTGCCGGGGCAACAGAGGCAG 4092658 28 100.0 32 ............................ GGTGCCAGTCGGCGCAAAAATCCTGATACGCC 4092718 28 100.0 32 ............................ AGTGAGGCCAGTAAACTTGCCTCGGTAAATAA 4092778 28 100.0 32 ............................ AGCAGTGCAAAAAATGGTGGCAGGGAAAACGC 4092838 28 100.0 32 ............................ TAGCGGCGTCGAGTTGGCAGGCAGGGTATTGG 4092898 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================ ================== 6 28 100.0 32 GTTCACTGCCGAGTAGGCAGCTTAGAAA # Left flank : GTCACCGAGGTGCCGGTGCCTAGCATCACCACGCTGGTATTGGCGATAGGGATATTCCAGTACAGCGACTGATTCCCTTCTTCCGTGACATATTCCACCCGTCCGCCATTCACCAAAATACGGCAATGCTGGAGGTAATAAATATTGGCGCGTTTGGAATGCAGAATGGTTTTTAAATCCGACGGGCTGAATACGTTATCCATAAAACCGTTTCTCTGTGGTGGTGATAAAACAACCCCATCCGCGTAATAAAACGCAGACTAATAATTCATTAAAAAACTCGTAATACACTGGAAATTAACGAGAATCAGCCTAGCACAGCCCAAACGGGAAAGTGAATGACGCCAGAAACACTTTTCCCGCTTCGATACCCTTTTTTTCAGCCGCCTTTTTCGGTATTGAAAAATCAATAAGTTACCGAGGACCGAAAAAAAAGGGTCTGACGGCGAAAATCGCCAATTGTGAGCCGGGATACAACGGGTTAGAGTCAACGAGCTACA # Right flank : AACGACGCTCAAATTTTGGAGCTGGGTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTTAACTCAATCACAAGGTTTATAGCCCTGGCTCTCATTCGAAGCTCACTCTGTTTCATATCGTGATAGCTGATCACGACATGAGCAAGATACAAGCCTCTCCTTGTCGTACGGGCGATGAAGTGGCAAAGAAACGACACCGTTTATCCCGCACGAAACCCTTCACAGCACCGACATGTTCTCTCTACCCTCATCCGGCAGTATTCCCTCCCCCACTCGGGGAGGGAAATATCACTCAGAACGACGTCCAGTCGTCATTGCTGCCGGCGGCGGCGGCACGTTTTTCAGTCGCAACCGGGCGAACGGAAGCGGCAGACGGCAGCGCGTGGGATAGCGTCGCCGACTGGCGGACCGGCGACGGCGCGCCGTTGTT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGAGTAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGAGTAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [48.3-21.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.51,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //