Array 1 1800542-1801362 **** Predicted by CRISPRDetect 2.4 *** >NZ_PCJC01000001.1 Salmonella enterica subsp. enterica serovar Derby strain 2015LSAL00981 2015LSAL00981_1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 1800542 29 100.0 32 ............................. ACAACGCCGGGCCGGGGCGGGGGGCGGAAGCT 1800603 29 100.0 32 ............................. CCGCATCATTACTGACCTGAACGCCCCGCAAG 1800664 29 100.0 32 ............................. CCTGACAATTTGAAATACTCCGCTGAAATGAT 1800725 29 100.0 32 ............................. TCAACGGCCTGCCGGGTAAATCGGTTCACGTG 1800786 29 100.0 32 ............................. TTGACGAGCGGTGATGTGTGCCGGAGTGGATA 1800847 29 100.0 32 ............................. TGATATGAGGCAAACGGCAGGTTACGCGCCAG 1800908 29 100.0 32 ............................. TCTTTTTGCATCAGCGACCAGAGCCGCTTGTA 1800969 29 100.0 32 ............................. GAGTGAGAATGTTCTTCATAGCAGGGGCAAAC 1801030 29 100.0 32 ............................. ATGCGCGTAACGGTCATTATGTTAAATAGAAC 1801091 29 100.0 32 ............................. AACATCGTCGCCAGGCGTTTTTGCATGTCGTC 1801152 29 100.0 32 ............................. CCTCGCCGTCATTCGACATTACGTTCACTCAC 1801213 29 100.0 32 ............................. TAACCATCGTGACGTGTGAAGTTGCCGCCCAG 1801274 29 100.0 32 ............................. ATTTTAGAATTACGCATTGAGCCGATGATGTA 1801335 28 79.3 0 ...........C...A.AA....-.G... | ========== ====== ====== ====== ============================= ================================ ================== 14 29 98.5 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACTTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATTGCCTGATGCTCTATCAATTTTACGGACGGCCTGCCGATGCCGTCTGTGACTTATCCATTACCTTGCATTGTTTATTTTCTCTATGCGAATTTCGATGAGTGTATAAAAGCGCGGATAAATTTTTCCATAGCGATGCATGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTGGAATGTAGTGCTGATAAAAAGTGGTTTATAAACAATGACATACGTTTAGT # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCTGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTATACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGTGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGGAAAATAAAAAAATTGTCGCGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGACCCCCTGCCGATTGG # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [68.3-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 1818003-1819740 **** Predicted by CRISPRDetect 2.4 *** >NZ_PCJC01000001.1 Salmonella enterica subsp. enterica serovar Derby strain 2015LSAL00981 2015LSAL00981_1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 1818003 29 100.0 32 ............................. CGAATATATATGATATCGAATAACGAAGCAAA 1818064 29 100.0 32 ............................. TCTAACACTCAAAGGTGGAATGACAGAGCCTT 1818125 29 100.0 32 ............................. TTTGCCACGCACCGCAAACAGGCAGTCTTCAC 1818186 29 100.0 32 ............................. CACGCCGCCATCACTGACAGCACAAAAACAAA 1818247 29 100.0 32 ............................. GATGAGTACATGGAAAGCTTTAAGCAAAAGTT 1818308 29 100.0 32 ............................. GCGATAGCTGTTTTCATAACGTGATCTCCAAT 1818369 29 100.0 32 ............................. GGGTAAAAAACTATACGATCCGCGCTTAGGGG 1818430 29 100.0 32 ............................. GGACAATTTGTGCTTTTGCAATTCACTTTGAA 1818491 29 100.0 32 ............................. TTTGTATTTAAACAATAAGGCGAATTATGAAA 1818552 29 100.0 32 ............................. GTTCCACAGGACGTTGAGAACGGCTTTATACA 1818613 29 100.0 32 ............................. CTGATTGACATGACGTCCGGCGACGACTGGAA 1818674 29 100.0 32 ............................. GTCTATAACCGTCGCCTCACGACTCGGCATGT 1818735 29 100.0 32 ............................. CGCCCGGAATCAGCGCCGTCTATTGAGGGGTT 1818796 29 100.0 32 ............................. AACGATATCACCGTACTGGCGAAAACGCTGCG 1818857 29 100.0 32 ............................. CCCGATAATTCTATATCGGGCATTGATTACTG 1818918 29 100.0 32 ............................. ACTGGCAGCACATAACCGGTTCGGACGCAGCC 1818979 29 100.0 32 ............................. AGATTGAGCGCCGCACTAACCAGCGCATGATC 1819040 29 100.0 32 ............................. GTTGGCAGCATGATCGCTAAATCTAAAATGCC 1819101 29 100.0 32 ............................. GCTGCGTTCAACAACGGGGAAATGCCGGAGAA 1819162 29 100.0 32 ............................. GAGAGGCCGACTCAGCAACCAAAAAAGGGAAG 1819223 29 100.0 32 ............................. AACGCGCAGCGCAGCAAAAAGCCGAGCTGGAG 1819284 29 96.6 32 .............T............... CTGTTAACAGGGGGAATGCTGAAGCAGCGAAA 1819345 29 96.6 32 .............T............... CGTGACTACTGCAACTTAAATCACGACGAAAT 1819406 29 96.6 32 .............T............... TCTCTGCCGCTACCGCGCTGGACTGCGCCGCC 1819467 29 100.0 32 ............................. AGTAATCAACTCAATGCGCTCACAACGCAATG 1819528 29 100.0 32 ............................. CCAGATCGCGCAAATCGCTGCGAGTATTCAGG 1819589 29 96.6 32 ............T................ TCCACGTCGCCCGCCATCAGGTTCGCCAGCTC 1819650 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGGCAAGGGCTGAAAA 1819711 29 93.1 0 A...........T................ | A [1819737] ========== ====== ====== ====== ============================= ================================ ================== 29 29 99.3 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTAAACCACCTCAGCCTGCGCCGGATATGCTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTAGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTTGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTAGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTTAGATTAGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTAGGTAATAAAAAAGGGCTTTTAGAACAAATACATAGTTTTAGT # Right flank : GTTTCACCAGCATATCAGAACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATGCCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [70.0-50.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //