Array 1 164296-164088 **** Predicted by CRISPRDetect 2.4 *** >NZ_BPUX01000023.1 Pasteurella canis strain PA42 Pasteurella_canis_PA42_23, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 164295 28 96.4 32 ...A........................ TTCAGATCAAAGTGATGAATTTTATATTCAGC 164235 28 100.0 32 ............................ TGTAATGCGCGCAAGCCTTCTGCTTGTTTAAG 164175 28 100.0 32 ............................ TATTGTAATATGACAGTTTTTACCGTCATCAT 164115 28 92.9 0 ...A....................T... | ========== ====== ====== ====== ============================ ================================ ================== 4 28 97.3 32 GTTCAACATCGTATAGATGGCTTAGAAA # Left flank : TGCTGATATGAATCTCACTCACGATATTTGGGATATTCGATTCAAAAGATCAGAAATGGACGATTCAATTTCGGTTTTTATGAGCACTCGATCTTTAGAGCCTTTTAGTGAGTATGGTGAGAATGTAAGAGCTAATATGGTGATTCGATGTAAAGATAATTCTACTGATTTAATGATTAGTTATTCAAATACATATTTACACAATGATCATGTAAAAGTTGAGTATCGTTTAGATAAGGATAAAGCTGTAAAAACAACTTGGGATACTTCGACTGATTTCAAAGCTACTTTTGCTCGAAAACCTATCTCAGTAATTAAATCAATGTTTGATAAAGACAGAATGTTGGTGAAAGTATCACCTTATAGTAAATCACCAATCACCTTGCCATTTAATATTTCAGGCTTGAAGGAATCTATTGAACCTTTAAGGAAAGCATGTAATTGGTAAGTTTGTAAAGCCCCTTGACCTAGAGGGGCTTTTTATATTTAGAGATTCAAAT # Right flank : AAATTGCGAAATTATTTGCATAGTTTATCAAAATTAAGTACCATGTCAGCACTATGTAAGTCATAGTTAAGTAGTAACACTTAAACAATTATTTCTAAGAGTTAATAGTACATATTAACAAAGATTAGTGACAGTAATCATTTTGTTCTTTGTAGCAATTTAACTAAAGATGTAGCTTGCCAATAGAACTTGTGCGAGCTTTTTTAGTCAAAAAATTGAGGAGGAGCGCACTATGAAAACATCACACAAACTAACATATGTTGCAAGTTTTATGATAGGCATGGGATCAATTTTGAATATTGGCTCTATTTTCACTCCTATAAATGTACGTCCTGCAAGCGATGATCAAATAAAACTAAAAGAGGACTGGAACGCTGTAGGTGGTTATTTGTATAAAGCAATGAGAAAGTCAGAAGATGCAGGAAAAACAACAGGATGAAGCTGACTTAGTTGCACTGGATAACAACAATGACATAGTTCAAAAAGTTGTTAAAACACCA # Questionable array : NO Score: 5.72 # Score Detail : 1:0, 2:3, 3:0, 4:0.86, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCAACATCGTATAGATGGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:65.52%AT] # Reference repeat match prediction: R [matched GTTCAACATCGTATAGATGGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-2.30,-3.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [71.7-65.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.28 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 12561-10852 **** Predicted by CRISPRDetect 2.4 *** >NZ_BPUX01000024.1 Pasteurella canis strain PA42 Pasteurella_canis_PA42_24, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 12560 28 100.0 32 ............................ TCATGCTTAAAAGCAGGAGTTCTAATTCCTTC 12500 28 100.0 32 ............................ AGTTAAGAAGCCCTTAGGCAAAAATGAAAAAC 12440 28 100.0 32 ............................ TTACTTATTTACGTATTCTAAATTAACCTAAT 12380 28 100.0 32 ............................ TTCGTTATTTTTAAGAAATAATTGTGTTGCAG 12320 28 100.0 32 ............................ ACTAATAGTTGGCTCTAAACTCCATCGAACCT 12260 28 100.0 33 ............................ TTATGATAGTGTTTGCTAATGTTGCAACCCCCA 12199 28 100.0 32 ............................ AATTAGGTGAAAGAATGAAAAGCTATGAAAAA 12139 28 100.0 32 ............................ AAATCCAGTTACCGCAGATCTCCATTACAACA 12079 28 96.4 32 C........................... ACACTTTGAATTTTCACATAACGCATTGACAA 12019 28 100.0 32 ............................ TTGGTTTGGTTATGTTGAAATTTGGGAAACTG 11959 28 100.0 32 ............................ ACTAGCCCAACGCATAGCATAGTAAGCGGTTG 11899 28 100.0 32 ............................ GAAACACTTTTCTGAAATATCAATACGCCCAG 11839 28 100.0 32 ............................ TTTATGAAAGCGTGCGTAAATGAAATTCCAGA 11779 28 100.0 32 ............................ TTTTGTTATCACAATTACTCGTGGTGGTTCTT 11719 28 100.0 33 ............................ TAAAAGAAAAAAATTGTGACGTTAGCCCTGCAA 11658 28 100.0 32 ............................ TTTTCTAACTTATAAAACTCCGTTAATCAGTT 11598 28 100.0 32 ............................ TCCTTTGAAAATCTCTTGGTTATTTGAAGTTC 11538 28 100.0 32 ............................ AAAAAGTACAAAATCGCGTTTGTGCAGTAATG 11478 28 100.0 32 ............................ TGTTATAACAGTTCTGTCATAACTCGGCAAAA 11418 28 100.0 32 ............................ TGATACGTTAGAAATTACTCGCACTCGCAACA 11358 28 100.0 32 ............................ ATTGCCAATACAACCCAATGCCTTTTTACTAA 11298 28 100.0 32 ............................ AGTAAGCTTTGAAGTGGGGGCAGAGATTGAGG 11238 28 100.0 32 ............................ GCTTGCCATTGTGCCACGCCAACCAATGACAC 11178 28 100.0 32 ............................ TTGAGATAATTGAATCAATGCCGCTTTGGCTT 11118 28 100.0 32 ............................ TTTCAGTGCGTCTTCAATTGTGATTACATAAC 11058 28 100.0 32 ............................ ACCACTCAACCAGAAAATGTTGCTGTTGATAA 10998 28 100.0 32 ............................ CGTTACTAAACGGCGCAATTCGCGCCAAACGC 10938 28 100.0 32 ............................ TGATCAATATACACTTGCAACAAATCAGGATT 10878 27 82.1 0 ...........T.....T..-...A.G. | ========== ====== ====== ====== ============================ ================================= ================== 29 28 99.3 32 GCTCACTGCCGCATAGGCAGCTTAGAAA # Left flank : TACCTTACAGTGCAGACACTTATTTACATCGTATTGGGCGCACTGCTCGAGCGGGAAAAAAAGGTGTTGCTGTTTCGTTTATTGAAGCTCATGATTACAAATTGTTGGGCAAAGTTAAACGCTACACTGATGAACTATTAAAAGCACGTACTATTGAAGGTCTAGAGCCTCGTACTAAAGCGCCTAAAGATGGTGAAGTGAAAACAGTCAGCAAAAAGCAAAAAGCGCGAATCAAAGCAAAACGAGAAGAAAAGCAAAAACAAATACAGCAGAAAAAAGTAAAAATACGGCATAAAGATAGCAAAAATATTGGTAAGCGCCGTAAACCCAGCGGACAAGTCAGCCAAACTGATTAATTTATTATACAGGTAACCCTTTTTTCTTAATGAGTTTTTTATCTAATAAGATCAAAGGGTTATTTTTATAGCTAAAAAAAGGGTTTTCGTATATAAAATGTGCAAAAGCTTGATAAATATTGAGGTCTGAATTAAACTGCCAAA # Right flank : CGGAAAATAAAGCATCGGGTACTAATTGTTGTGCAAGCCAATTTAGTCTGTTTTGCCTATTTTATCGTTGTACATTTTGTTTTTAACTTGATAAGAAGGGCAAAAAGACAGCCGCACTTTTGTCGGTATGTAAAAGTGCGGTTGATTTTTCTTCTGTTTTATAGCGCCTTATTGGGTTGCTGGGGTACCGTATTTTTGTGCTAACTCGTTATTTAGTTGTGTAAACTCATCAGTGATTTTAAGTAGTACATCTCTTTTCACCAGTAACGCTTGTCCACCAGCTTCGGAAGGATTTTGCTGTAGTTTTACATTATCTGTCATTAGTTCTGATGAAGTAACAAGTAAGATTTTTGCTTTTTCTTTTAGAGCACGAACTTCTGCACTATAAATAGCTAATGCATCTAATTCTTTTACAATACTATTAATTTCTTTTGAAAATGTAACTAATAGAGTTTCTAAGGCTTTTTTGTCACCTGATTGCAAAATTTCAACTAGTTGTT # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GCTCACTGCCGCATAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGCATAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [61.7-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 96639-92829 **** Predicted by CRISPRDetect 2.4 *** >NZ_BPUX01000024.1 Pasteurella canis strain PA42 Pasteurella_canis_PA42_24, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 96638 28 100.0 32 ............................ AGCGGAGTTGTTACTGATTACGGGGACGGCGA 96578 28 100.0 32 ............................ ATCTTCTTCTCACCGTCGTTTGTTGTGTCATA 96518 28 100.0 32 ............................ TTTATTTTTTAAGGATAAACACTGATAATTTC 96458 28 100.0 33 ............................ TTTTGGTAAATATTTCCTCGTGTTTTGCTACTT 96397 28 100.0 32 ............................ TAATCATGATTATACAGATAATCCAGAATCCA 96337 28 100.0 33 ............................ ATACACATTGTATGACTACGACTGCAAAGTAAA 96276 28 100.0 32 ............................ TTTCTCAGATTCAATTATTGATTTTTGTCTCT 96216 28 100.0 32 ............................ ACATAGACCAGGTGAATGCAACTCTGCATTAA 96156 28 100.0 32 ............................ ATTTCCGGCGTAACGTGCGAGATGTCATTTTT 96096 28 100.0 32 ............................ TATTAAAACAAGTCCTGAGAGAGGATTACAAG 96036 28 100.0 32 ............................ TCTTAAACCCAGCACTTCTCCCCTCTCTCCAA 95976 28 100.0 32 ............................ TTAGGGAAAAATTACAAGTTTAAATTTTAAAA 95916 28 100.0 32 ............................ AGGTGTCAATAGAAATCAGCACTAAGTGTGAT 95856 28 100.0 32 ............................ ACTGGTAGCGCGCTAATACCCTGTATTTTTCT 95796 28 100.0 32 ............................ ACGACGGCACGCCGCACTGGCACTTATTGACT 95736 28 100.0 32 ............................ GCCAAAAAGATTTGGCTTATCAATGTAAATCG 95676 28 100.0 32 ............................ GACCGCGGCATTGAGAGTGTCGTTTTTCGGGT 95616 28 100.0 32 ............................ TGGTATAAGACGCCATCTCATCATTTAACTTT 95556 28 100.0 32 ............................ TTTGAGTTTTTCGGGTGTGATTTTATAGCTAG 95496 28 100.0 32 ............................ TGAAAATGTATGATAATTCGGCTATCTAGTCA 95436 28 100.0 32 ............................ ACCAAGAACGATTATATCACCTGATTTAACTG 95376 28 100.0 32 ............................ GAATTTATTAACACTCAAAAGCTCTTGCCCAC 95316 28 100.0 32 ............................ AAAATCCTGTTCTATTGCTAACCAGTCAATAT 95256 28 100.0 32 ............................ AAGCACTTTTAGCACATGGGTTTCTCGCAACT 95196 28 100.0 32 ............................ ACCATGGATATATAAAGCGTATAACTATCACG 95136 28 100.0 32 ............................ TAATGCGATTGCTAGTGCATTGGTATATTGCT 95076 28 100.0 32 ............................ AATATTCGGCTGCGTCGCCGATTAAGCTGTAA 95016 28 100.0 32 ............................ AGTTACCAAGCGACGCAATTCGCGCCAAACAC 94956 28 100.0 32 ............................ ATTGCGTTTTCTTGGCTCATATCAGCGTGATG 94896 28 100.0 32 ............................ ATTGTCGCAGATAATCCTGCAGAAATAAGCTG 94836 28 100.0 32 ............................ AGTGCATCAAGCCCTTTTGCGCCAATTCCGCC 94776 28 100.0 32 ............................ CTTGAATACCTTGATTTTAATGCACCTGATAT 94716 28 100.0 32 ............................ TTGCAGGGAATTGGCTATTAGCAAGCCTTAAC 94656 28 100.0 32 ............................ TTATCCCAACAAGTCGGAAAAGGCGATTTAGC 94596 28 100.0 32 ............................ TACAGGTGTCGTCTGTTGGTGATAAAGTAAGT 94536 28 100.0 32 ............................ AAGCAGATGGGGTAGAGTTGAAAATCTATTTG 94476 28 100.0 32 ............................ AAACTTGCAACCAGTGGACAAAATCAACGTTA 94416 28 100.0 32 ............................ TTTTGGTAAAAAACTAAAACCTGTTTCGCCTT 94356 28 100.0 32 ............................ AGTTGAAGTTGTCACAAGTTGAAATTTAGAGA 94296 28 100.0 32 ............................ TTCGTGACAATTATCCTCTCCACAGATTGTAA 94236 28 100.0 32 ............................ TGATTAGAAGAATACCGTTTATTGGTTAAGGA 94176 28 100.0 32 ............................ ATCAAGATTTCCATGCGTCCCTGAATGCCACC 94116 28 100.0 32 ............................ AGAAAAACAAACCTCAAGATTAAGTGATGAGA 94056 28 100.0 32 ............................ TCTTACGATGCTAAACGATTTGAAAAATCAAC 93996 28 100.0 32 ............................ TAATTACCTTTGCCTCTTTCTATTAAAACAAG 93936 28 100.0 32 ............................ TTTTTATGGATGTAATTTTGATGAAGTAGAAG 93876 28 100.0 32 ............................ GTCAGAGTGGCTTGATGGTAAAAAGATTAAAA 93816 28 100.0 32 ............................ TCGTCTTTCACCTGCACGATGAACGTCTGATA 93756 28 100.0 32 ............................ AACTCTGGCGACGGCAACGACGGCGACAACAA 93696 28 100.0 32 ............................ TGCTTAGTTGATATATAGATTAAATAATTTTC 93636 28 100.0 32 ............................ TGGAAGAGCGTTGTTATCAACTTTCTTATCTA 93576 28 100.0 32 ............................ TCACTCCAAAGAGGAAATTAATCGAATTAAAG 93516 28 100.0 32 ............................ AATACCAATAACCGACCGAAGACCAAATCTCT 93456 28 100.0 32 ............................ GTTTGAGTTTGTAAAAGGCTTGAACGGTGTCA 93396 28 100.0 32 ............................ TATCTTCTTTTCTATGTTCGGTTAATCTAATC 93336 28 100.0 32 ............................ GTCAGCATCGCTAATATTTCAACGTATGCGCA 93276 28 100.0 32 ............................ AAGAATAGGTACATCAGAACCCACAGAAAAAT 93216 28 100.0 32 ............................ TTCTCCTGTATCTCTGGAAAAAGGAAGTAATG 93156 28 100.0 32 ............................ CTCGTTTAAATAGAACGCCTCCCACTTATCCC 93096 28 100.0 32 ............................ TTTAAAATCGATTTTTACCGCAGTAGAGGTAG 93036 28 96.4 32 ....................T....... GTAAGCCAACACTTGCCAGTCTTCCGTCCAGC 92976 28 100.0 32 ............................ TCAACAAGAGAAGATCTTGTTAAAGAGAAAGA 92916 28 100.0 32 ............................ GGTTATTGACAGAGCGAACTGGTTGGATAGAT 92856 28 82.1 0 ....................T.C.T.TC | ========== ====== ====== ====== ============================ ================================= ================== 64 28 99.7 32 GTTCAACATCGTATAGATGGCTTAGAAA # Left flank : CGGCTTTATCAACAATTATCACAAGTAGGATTGCAGGATTATGCGTTGATCAGTAGTGTAAATAAAACTCCTCCTGTAGCAGAATATCGTTGTTATAGTCGTGTGCATCGTAAAGGACAAAGTACGATTCGTCGCACAGAAAAGTTCCTGAAGAGTATTGACAAATGGCGTGAAGGGATTCGTGAAGAAATGCAACAACGCCAACAAAATACACCTTATTTTCCACATGTACATTTAAAAAGTGCGAGCACAAATCAGTGTTTTATCTTGGCAATAAGAGTCAATAAAACCTCTCAGCCTCATATTGCTCAATTCAGTAGTTATGGATTAAGTAATAAAGCAACGGTGCCACACTTTTAACCTAATTTATAACCCTTTTTTCTAACTGGCTAAATTAACAAATGAGATCAAAGGGTTATAAATATGCTGTAAAAAAGGGTTTTTCTTTCAGATGCTCTTTAACAATTTGAAGAATCAATAAATTTTTATTAATATTCTTA # Right flank : TGCTTAAATAAAGCTTATTATTTAAACATATTGAAAAAGTTAAATGTTATTTAATTTAGTTTAAACTGGATTTTAATATTTTTACACTTAGTTAAGGAGGATGTTGTGCGTAAGACACCTTATATTGCCTCTTCAGATTTAAAAACCATAATGCATTCTAAAAGAGCCAATATTTATTATTTAGAACACTGTCGAGTATTGTTAAATGGTGGACGAGTGGAATATGTGACTGATGAAGGTAAAGAGTCTTTATACTGGAATATCCCTATTGCTAATACTAGTTGCCTGCTATTGGGGAGTGGAACGTCTATTACACAAGCTGCAATGCGTGAACTATCAAAAGCAGGAGTGATGGTGGGTTTTTGTAGTGGCGGTGGTACGCCTTTATTCAATGGAACAGAAGCAGAAATTGGCTGTGAGTTTTTTAGTCCACAAAGTGAATATCGTCCTGTTATCTATTTACAACAATGGTGTCGTTTTTGGTTTGATGATGAAAAGCG # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCAACATCGTATAGATGGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:64.29%AT] # Reference repeat match prediction: R [matched GTTCAACATCGTATAGATGGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-2.30,-3.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [85.0-81.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.28 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //