Array 1 108414-105453 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAIXCO010000007.1 Salmonella enterica strain LB16 contig00007, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 108413 29 100.0 32 ............................. CCCCACAAATCACTGGTCGATTTCGTCGCACG 108352 29 100.0 32 ............................. GTTGCGACTAAACCGGACCAGCGCCCGCCCAC 108291 29 100.0 32 ............................. CCAGTGCTCGCTTGCTTCTACCCGTCCCGATC 108230 29 100.0 32 ............................. GCGGTTTTATTCGGCAGGGCATTGAATTTAAT 108169 29 100.0 32 ............................. AATTATCTATTTTTCTGGCCCGTTTTCAATGC 108108 29 100.0 32 ............................. CCCGCGTTTTGCGTCAGCATATAGCCAATATG 108047 29 100.0 32 ............................. GCTTTGCATACGTCACTCATAGACAAATCACG 107986 29 100.0 32 ............................. CGATTCTGGTAACGTCGCTGTACTGCCTGACA 107925 29 100.0 32 ............................. GGCGCATGAAACAACCGGCGGGGATCTCTATT 107864 29 100.0 32 ............................. ACAGCGTTAAAATGACGCCCGACGTTGTGGTG 107803 29 100.0 32 ............................. AGGGCTAACACATCACCATTATTACCAAATTC 107742 29 100.0 32 ............................. GACATTGCCCGCTGGGATGCGCGGCAACTGGA 107681 29 100.0 32 ............................. AATTGCCTTTGCTGCCCGGCTCTTCTACGGTC 107620 29 100.0 32 ............................. AGATGAATAACGCGATTTACGAGGTTACGTAT 107559 29 100.0 32 ............................. ATTAAATACCTGGAAAAATACCCCAAAGGGGC 107498 29 100.0 32 ............................. AAAAATAGCGATAACGCGCCAGATCGTGAGGT 107437 29 100.0 32 ............................. TCATTTTTTATTTTCACGTTCGGCTTTCTCAC 107376 29 100.0 32 ............................. TTAAATCGACCTACCTGTTAAACGCGTCAATG 107315 29 100.0 32 ............................. TTCGCAGTAACAGTGTCGTTTTTATAACCGAC 107254 29 100.0 32 ............................. GCGGCATTAATGCGGGATTGTGTTTTCTGAGC 107193 29 100.0 32 ............................. ACGGCAGAAACAATGGCGTCAGTAGCTCAGGA 107132 29 100.0 33 ............................. CAGTCAATGAGACTTTTCACACTGATAATGTTG 107070 29 100.0 32 ............................. CCCCTATTCCTGATCATCGCGCATTTGGCGGC 107009 29 100.0 32 ............................. ACCACCACGTAGCCGTAGGCTGTCGCCAGTTG 106948 29 100.0 32 ............................. GAATTACGTTGCGAACAGCGCGGCGAGAGACG 106887 29 100.0 32 ............................. CGGATTGCATTCAATAAACATGTAAATAGGAA 106826 29 100.0 32 ............................. TTACCGACACCTGCGTGGCTAGCGTTTTTTCG 106765 29 100.0 32 ............................. CCAAAAACATTGAGTGCTTCTTGTACGTTCAT 106704 29 100.0 32 ............................. CCTGCGTGCGTGCAACGGGTAACTAAGGGGAA 106643 29 100.0 32 ............................. CATTGGGTAATTATATTCGCAATTTAAGCGAT 106582 29 100.0 32 ............................. ATATTTTAAACCAGACTGACGCGATGATCGTT 106521 29 100.0 32 ............................. CCATCAAAGCTGCTGCGCTGGTGGCATAACCC 106460 29 100.0 32 ............................. ACTACGCGGCATGGCTGAACCCCGGATTCAAG 106399 29 100.0 32 ............................. CCCCAGGCGGTGCCTACGTCGGATGAAGAGCC 106338 29 100.0 32 ............................. CCGTGGAAAGAACCAGAGCGTTGGTTATTGGT 106277 29 100.0 32 ............................. CTCCCAAACCTCTACAGCGCTACCAACAGGAA 106216 29 100.0 33 ............................. GATCGCCCACCGGCATAAACGCGATAGCCGCGT 106154 29 100.0 32 ............................. CTGTTCCCGATCGCTTTATATCGGGGGCCATC 106093 29 100.0 32 ............................. TACCAGACGGACAGCTACGATACCGCTGACGA 106032 29 100.0 32 ............................. GCAGTACTGGCTCTAAATTTAAAACTGGTCAG 105971 29 100.0 32 ............................. TGGCCCACGTGCGCGGAGACGGCAACCGGTTC 105910 29 100.0 32 ............................. TCTCGACGCCAGATTTAATATTAATTCCCGCA 105849 29 100.0 32 ............................. CAGACGTAGAGATTGAGAACACAAATGACTCA 105788 29 100.0 32 ............................. GATTGCTCAGATTGGGAATTTGACCAGCGACC 105727 29 96.6 32 ........................G.... ACTATTTTTCAGGTGAATTACAGCGCCGCAAC 105666 29 100.0 33 ............................. GCGAAAAATTGACGCTATCAGGGAGAGCGCCGG 105604 29 100.0 32 ............................. CCGGAAAACTATCTCTATCGCAGGCTGGATAT 105543 29 100.0 32 ............................. GCCGTGAACGCGTCGCCCGCTTTTTTGTAGCA 105482 29 96.6 0 ............T................ | A [105455] ========== ====== ====== ====== ============================= ================================= ================== 49 29 99.9 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGCTGCCGCCAGCAATACCGGAACCTGAATCCCTGGGGGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTAGTCACGGAAAACGTACCGCCGCGCCTGCGGGGTCGCCTTGCCGTCTGGTTACTGGAGATTCGTGCCGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTTAGATTAGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATTTTACCGTTGGTAGTTTGTTAGGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : TTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTTTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCGT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 126046-124673 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAIXCO010000007.1 Salmonella enterica strain LB16 contig00007, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 126045 29 100.0 32 ............................. ATTAAATTTTCGGGAACGGCGACGGAATCCGG 125984 29 100.0 32 ............................. AAAATCATCATGGCCAGCGCTGGCGCGCTCGC 125923 29 100.0 32 ............................. AATGATTATATCGATCGACCAATCGATGAGCA 125862 29 100.0 32 ............................. TCGGTGAGACAAATCATTCCAGATTGATCAAC 125801 29 100.0 32 ............................. AATTTAAACAGTAATTTAAAATTGTTAGCGTC 125740 29 100.0 33 ............................. GCAACGGCGGCGCGGCATTCTGCGGTGCAAATA 125678 29 100.0 32 ............................. GATTCCAGCGCGCCAAAATCAGGAGATTCCGT 125617 29 100.0 32 ............................. CCCCCGGCATTCGGCTATGCCTATTCATATGT 125556 29 100.0 32 ............................. TGGTCACTACCGTCTATCTCTTCCGGATACAC 125495 29 100.0 32 ............................. AACCCGGCAGCAGGGGTAATTCATACAGCATA 125434 29 100.0 32 ............................. ATTTGGTGAAGGGCGCATTTGAGGACCCGTTA 125373 29 96.6 32 ............T................ CTTGCAGCCGAATACGGTATAGAGTGGGACGG 125312 29 100.0 33 ............................. GCCTGTCCTGCGTCAGCGTTACCAGCTTCATGC 125250 29 100.0 32 ............................. AAATTCAATTACGACTCGCTGCCTGACGGGGT 125189 29 100.0 32 ............................. ATTTTGAGCGGACGGGAGCTGGCCGAATGACC 125128 29 100.0 33 ............................. CGGTTTTTACTTTTGCTGCATTCCGCCTCCCGG 125066 29 100.0 32 ............................. TCCTGGCAGGAATACAAACTTGTGATGCTGCG 125005 29 96.6 32 .............T............... ACCGCAGGCGCAGCGGCAATATTCTGGTTCAA 124944 29 96.6 32 .............T............... TCGTTTCTGGGAGCGGGTCTTTCCAGTATTGC 124883 29 96.6 32 ...........C................. CAGGGGAAGAGGTTCCGGCCCAGCAGTTCTAT 124822 29 100.0 32 ............................. CTGCTGGGTCGTGTTTGACTCAACGCTCCCCA 124761 29 100.0 32 ............................. ATTTTAGAATTACGCATTGAGCCGATGATGTA 124700 28 82.8 0 ...............A.AA.....G-... | ========== ====== ====== ====== ============================= ================================= ================== 23 29 98.7 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGATAAAAAGTAGTTTATAAACAATGATATCCGTTTAGT # Right flank : TTGCATAATCATAATCTGTGTACCAGTAATGGCTGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTATACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGATTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTCGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAGCAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGAAAAATAAAAAAATTGTCATGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGACCCACTGCCGATTGGC # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //