Array 1 2230813-2234015 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP053291.1 Trueperella pecoris strain 19M2397 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 2230813 29 100.0 32 ............................. GAGATGCCGAAGGCGCTGCAATTCACCGGCGC 2230874 29 100.0 32 ............................. CGGAGGCTCTCACCCCCGGCCGCGAAGACGAT 2230935 29 100.0 32 ............................. ATCAAGCGTCTCAAGACCGTCGAAATCACCCC 2230996 29 96.6 32 ............................G TGGTCAGCACGGAAAAGAATGCGAAGGCGACG 2231057 29 100.0 32 ............................. CGCCAAATAGTCGACACAAACATCGAATTCGT 2231118 29 100.0 32 ............................. TTTGCTGTCAGTGAGGCGGGGAGCCAAGTTGG 2231179 29 100.0 33 ............................. GCCACGAGCGCCGAGTTACGAAAGACCAATGAG 2231241 29 100.0 32 ............................. CAGGTTTAGAAGGTGGAGATCGTTCCAGAATT 2231302 29 100.0 32 ............................. TAGGTCCAATCTGGTGGTGTGCGCCACACTTT 2231363 29 100.0 32 ............................. ATAGCCACAGTGTAACGAGAATGTGGCACACC 2231424 29 100.0 32 ............................. ACGGAAAGGATAACCTTTATGGATACTGTTTT 2231485 29 100.0 32 ............................. CACTTCGGGTTCGAGAAATACCCGACGTCAAC 2231546 29 100.0 32 ............................. GCTTAACGGTTTCACGCACCGGGCAGCCTTGC 2231607 29 96.6 32 .....................A....... GTTTCACCTACTTCCGGTATCTTGGTGTCAGT 2231668 29 100.0 32 ............................. CCCGAGTTTCGTATCCTCATGGCCGCTTGGAG 2231729 29 100.0 32 ............................. TTGCGCAGGGTGGCGAGGGTGATGCCGAGGCG 2231790 29 100.0 32 ............................. ACGGCTGAGGATAAGCCTGAGGAGTGGGCGGA 2231851 29 100.0 32 ............................. GGCCACGTTTCCACGAATTTCACGCCGAAGGT 2231912 29 100.0 32 ............................. CTGTGGGGCGCTGACCTGCGGGGCGCTGACCT 2231973 29 96.6 32 ............................T GCCTTGTGTGGCGATTTCGCGTTGCTTGGCTT 2232034 29 100.0 32 ............................. CGCCCAAATCTGGGCATGTATTCGTTTGGCGC 2232095 29 100.0 32 ............................. GATTTCATACCTCAGGCGGACTCGCTCGACGC 2232156 29 100.0 32 ............................. CAGTCCGCAACAGTCATAGCAGTTTGGCCCGA 2232217 29 100.0 32 ............................. CGTGACCGTCGTCGGCCCAGAGGTAACCACTG 2232278 29 100.0 32 ............................. TGGCAAGAGATTCGTTCCCTCGCGCTGTTGAT 2232339 29 100.0 32 ............................. AGTGAGCTGGTCAATCCGAGTGGTGAGGTCGT 2232400 29 100.0 32 ............................. GCCGGCATCGACACCGAATCCCCCGAGTGGGA 2232461 29 100.0 32 ............................. ACGGGGCCGTAGTCGTCGGATTCGATCCCATT 2232522 29 100.0 32 ............................. AATCGGCACGATCACCGATATCAAGGAGAGCC 2232583 29 100.0 32 ............................. TTCTACGATGAAAAGCTGATCTATCCCTTCGA 2232644 29 100.0 32 ............................. CCATGCGGGCCGGATGGTCTTATCGTCGGACG 2232705 29 100.0 32 ............................. AAGTGGTCAACGATTGACACGTATGGGCCGAA 2232766 29 100.0 32 ............................. GACATAGTCATACTTGGCACCCGGCCTAAACG 2232827 29 100.0 32 ............................. GGCCCGAGGTTTCCATCTACGCCGAGACTGAT 2232888 29 100.0 32 ............................. GACACCCTCGCCCACATCGCTGACCGGGCGGG 2232949 29 100.0 33 ............................. GGGACTACCGTGTTAGAAAAACCCCCCAACCCG 2233011 29 100.0 33 ............................. CAGAGCCGAACCAGTAAAACTTGGCCATAGGCA 2233073 29 100.0 32 ............................. AGCTGAAAGAGGAGGCCCTGCAAGCAGATGAG 2233134 29 100.0 32 ............................. GTCGCTTGCTCGTGAGCTGCAGGCGGCGGCGG 2233195 29 100.0 32 ............................. AGCATCGCAGCTATTACGGCGCAAGATCTAGA 2233256 29 100.0 32 ............................. CCTATGAATACTGTTTTTTCTCCTCAGCTGCG 2233317 29 100.0 32 ............................. AGCATCGCAGCTATTACGGCGCAAGATCTAGA 2233378 29 100.0 32 ............................. ACTGGGTGCGCTTTACCCTAGGTTAGTCACAT 2233439 29 100.0 32 ............................. CATGCGGGAAGTAAACAGACTCCTGAGCGAGA 2233500 29 100.0 32 ............................. CATCAGCGAATATCTGGGCATGGGGCGGCAGT 2233561 29 100.0 32 ............................. GCCTTGGAGTGCGGCGAGTTCGGCTGGGTGGC 2233622 29 100.0 32 ............................. TGTCGCATCCACTATTGCCACAGCAGTAGCGC 2233683 29 100.0 32 ............................. GTCACCTTTGAAGCGGCTGGGGAGGGGCACGG 2233744 29 100.0 31 ............................. GCGTTCAGAAGATGGAGAAACGCGGCCGTGA 2233804 29 100.0 33 ............................. ATGGCTGACCCGTCTGTTTTCCGCATGGAGCCG 2233866 29 100.0 31 ............................. GCCGGGGTCTTCAAAGACGATGACGCAAATT C [2233869] 2233928 29 100.0 32 ............................. CAATCCGGCCTCGGAATCGCGGCGCAAATGGT 2233989 27 89.7 0 .....................--C..... | ========== ====== ====== ====== ============================= ================================= ================== 53 29 99.6 32 CTCTTCCCCGCGCGAGCGGGGGTAATTCC # Left flank : ATGCTCAGTACATTGATGGAGATTCTCTCGCCGCATCTTCCTGATCGTGACGACGACCGGCTCATTGGGGGTCGCAACCACGAAGTCGCGGGTCATACGCAATATGGGGTGAAGTAATGTTCGTTGCCATTGTGACGACGGCGATTCCTGAACACCTCAACGGCTACATTGGTCGATTCCTGTCGGAAGTTGATGCGGGGGTATTCGTTGGGAAGGTTTCGCCCGTTGTGCGCGACAACCTCGTTGGCCGCTGCCACCAGGCTGTTGACGACGGCAAGATCGTTGTTATCAGTAGTAGTGCGGAGACGGAGCAAGGCTTTGTCGTAGAGACCCTTGGGAGGACATCACGTAAGATTATTGACATGGACGGACTCCTTCTGAGTGCGATGGTGTCGCGGGGCTGCGCTATCGCAGAAGCACAACCCCGTGAGACTGAAACTCTGGACCAGGTTTTCGTGAAAAACGCGGGCCAGGGCTAGTAAAGCCGCAGGTGAGATAGT # Right flank : CCGGGTGGCTACACGAATGGTTACACCAACGACGGCGCAATGCCACACGTTGCGCACTCGTCGAGCGCAAATCGCAAGCGACATTTCAGCTTGGAACCGCTGGTACATCAGGGAAAACGGTTCAGTGGGATTCAAGATCAACCACTGAGCCGATAAGCGCGCCCAAAGGGGGTCGAACTCCCAACCTTCTGATCCGTAGCCAGACGATAGGGGAGACCTTCAACCCTCCTGGCCCTCATCTTCCCGTTGCTCGCCTCCCGGCACACACCTTCCCGGCTCGCGCCCATCCGGCGTAGGCTTTATCCCATGAGCAACGTCACCGTATCCATTCATCCGTTCTGGAACTTCGACATCGACATCCCCGGCGCTACCGTGGTGCGCTGGGACTTCGAGTCCGACCCGCCGGTCGAGCATGCCGACATCGTGGTGACTAGCCACTGGGCCACTCCCAACGGTGTGGAAATGGCGCAGAAGGTTGGTGCTTCCCTGCTTCAGATTGG # Questionable array : NO Score: 3.24 # Score Detail : 1:0, 2:0, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTCTTCCCCGCGCGAGCGGGGGTAATTCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,6] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-13.80,-12.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [2-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [45.0-40.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0.37 Confidence: MEDIUM] # Array family : NA //