Array 1 64817-63630 **** Predicted by CRISPRDetect 2.4 *** >NZ_NLRI01000017.1 Escherichia coli strain MOD1-EC5181 MOD1-EC5181_17_length_100258_cov_79.4346, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 64816 29 100.0 32 ............................. CCCCTTGACCTTAACGCCGCGTTTAGCGTCAC 64755 29 100.0 32 ............................. GGTATTTTCAGCAGATTAACCACCGCGATCGC 64694 29 100.0 32 ............................. ATTACATCCGGCAATATCATGCTGATGCCTCG 64633 29 100.0 32 ............................. GGACGCCCAGGAAAAGGACATTGCAGCGTCAT 64572 29 100.0 32 ............................. AAGGTCGTAAACATTGAAGACGCGATCGCGCG 64511 29 100.0 32 ............................. TAACAGGAATGTTTACGCTGGCTGAGGCTGAG 64450 29 100.0 32 ............................. CCGCCGTCGAGTGTAATACCCTGATCCATCGC 64389 29 100.0 32 ............................. CAGGATTGAAATACAGCCTCGGCCTGGGACAG 64328 29 100.0 32 ............................. AGGCGAGGGAGATCAGAGATCAGGCTATTACA 64267 29 100.0 32 ............................. AGATCGGCGGCCAGTGGATAACCGTTATCCCC 64206 29 100.0 32 ............................. GTGTGGTAATTGGTGGTCTGGCTGGTGGTTTA 64145 29 100.0 32 ............................. AGAATCTGGACACTGCATATACCGCAATCCGT 64084 29 100.0 32 ............................. CCAGCCGTTCAGTATTGCCGGTGTCAGCAAAA 64023 29 100.0 32 ............................. GAAAAGCTACTTTTGTGTTCAACTGATGCATT 63962 29 100.0 31 ............................. CCGCGCAAATCCAGCGAGCCGCCGACGCTCA 63902 29 100.0 32 ............................. TTGCAAACCGTGGCAAACGCAATTAACAAAAA 63841 29 100.0 32 ............................. ATTGTTATAATTATTTATTGAAATATCATTCC 63780 29 100.0 32 ............................. AATCTATTGTGAATTTGAAATGGTCCAGCACT 63719 29 100.0 32 ............................. GGTAAAAACACGGTCTGAACCGACATTCATGT 63658 29 93.1 0 ...........AT................ | ========== ====== ====== ====== ============================= ================================ ================== 20 29 99.7 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTTGCCGCTGGTGAAATTGAACCACCACAACCCGCGCCGGATATGTTACCGCCTGCCATCCCTGAACCTGAAACGTTAGGCGATAGCGGTCATCGAGGACGCGGCGGATGAGTATGATCGTAGTTGTAACGGAAAATGTTCCTCCACGTTTACGTGGACGGCTCGCTATCTGGCTACTGGAAGTGCGTGCCGGTGTGTATGTCGGAGATACATCCAAACGTATTCGGGAGATGATCTGGCAGCAAATCTCTCAACTGGCAGGTTGCGGAAATGTAGTGATGGCTTGGGCGACCAATACCGAGTCAGGTTTTGAATTTCAGACCTGGGGTGAAAATAGACGTATTCCGGTGGATTTGGATGGGTTGCGTTTGGTTTCTTTTCTTCCTGTTGATAATCAATAAGTTATCCGTTCTTTAAAAATAAGGAAATGTTTTAATTTAGTTGGTAGATTGTTGATGCGGAATAAATTTGTTTAAAAACAGTTATGTATGCTTAGT # Right flank : GGCGCACTGGATGCGATGATGGATATCACTTAGAATTCCCCGCCCCTGCGGTAGAACTCCCAGCTCCCATTTTCAAACCCATCAAGACGCCTTCGCCAGCTCCTTCACCAACGGTAGCATTATCCGCATAACGTCACGGCAGCGACGTTCTATTCTTCCAGGAAGTGCCTTATCAATATGCTGTTGATTATCCAGTCTTACGTCATGCCAGCTATTTCCCGCAGGGAATGCGGCTGTTTTTGCGCGTTGCTGATAACCATCCTTATTCCCAAGATTCCAGTTAGTCGCTTCCACCGAAAGTACAGCAATGCCCGCTTTGTCGAATATTTCTGCGTCATTACAACACCCAGTGCCTTTCGGATAATTTTTATTCAAACCCGGATTGGTCGTTGCGGCTATTCCGTGACTGCGCGCAATTGCCAGCGCCCTGTCGCGCGTTAATTTCCTTACTGCTTCAGGGGTTTTTACACCGCTGTTGAAATACAATTTATCGCCAACAA # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [43.3-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 81628-80318 **** Predicted by CRISPRDetect 2.4 *** >NZ_NLRI01000017.1 Escherichia coli strain MOD1-EC5181 MOD1-EC5181_17_length_100258_cov_79.4346, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 81627 29 100.0 32 ............................. GATACGCTTCATCGCCCGACGTGGGGAGCATA 81566 29 100.0 32 ............................. ATATTGTCAGAAACTGGCTGGAGCATGGTGAC 81505 29 100.0 32 ............................. GTGGCTGAACTTCCGATGCGATGAATGTTATT 81444 29 100.0 32 ............................. GGATTTTCTTTGGTGGGGAATGCCCGCCGTGT 81383 29 100.0 32 ............................. TTGATTACCTCGCTGTTGCTGCGCTACTGGTG 81322 29 100.0 32 ............................. GCGTTTCCATGCCGTTGATAAACATCCCGCCC 81261 29 100.0 32 ............................. GGTTGCCATCGCTGACGCAACGTCATTAAGGC 81200 29 100.0 32 ............................. GGAATAATTACCGCGCTGATTAAATTAATTAA 81139 29 100.0 32 ............................. GCGGCAGCGCCCGCCGGGTACGACGGCAGCAC 81078 29 100.0 32 ............................. CGCTTTTGCTCAGTAGTGAGTGTGATTTCATC 81017 29 100.0 32 ............................. CAGGTACAGCCGTTTCGGTGTTTTGTTTTTGT 80956 29 100.0 32 ............................. GCGTCGCTGGAAGAACAAAACCGCCTGATCGA 80895 29 100.0 32 ............................. GCACCACGCGTACCCCGATGTTTGTTTTGCCA 80834 29 100.0 32 ............................. AAAATTCTGTGTTTCGACCATTACTTCGGTAA 80773 29 100.0 32 ............................. ATTCTTGATCACGCTTTTACCGAAGTAATGGT 80712 29 100.0 32 ............................. GGGGTAGAATTATTCTTCGTGAGCGATTTATC 80651 29 100.0 32 ............................. ATGTAGGGGCAATCGAACGATTCTCTGCCGAC 80590 29 100.0 32 ............................. CCGAGCCCGATTATCGGCATGAGCGATGCGGA 80529 29 100.0 32 ............................. TCGAAGAAGAAAGGGAAATAATGCGAGGAACG 80468 29 100.0 32 ............................. TATTACGCGCCAGCAATGCTGACAGCGGCAAA 80407 29 100.0 32 ............................. CGCGAGAGCCAGCAAAACGCCAGGGCACAAAA 80346 29 93.1 0 .A..........................A | ========== ====== ====== ====== ============================= ================================ ================== 22 29 99.7 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TGGATGAACTATTGGCAACGCTGACCGATGATAAACCGCGAGTCATTGCACTGCAGCCGATTAGCCAAAAGGATGATGCCACACGTTTGTGCATTGAAACCTGCATTGCGCGTAATTGGCGTTTGTCGATGCAAACACATAAATATCTAAATATTGCCTGATTAAACATTTATAAGCGTTATAAATGGGTGGAACCTGTAAAGACTTCTACTCATTTATATTGTTTGTCGCCTCTGAAAACTCCTCCATTTTACCCATCCAGGGCTAATCATTAGCATTCTCTACAAATTCTGTGGCATTAATTTTTCGCTGGAGTGAAAATTATTGCGGTAAAGTTTGGTAGATTTTAGTTTGTATAGAGTTATTTTAAATATTTACCTTTTTAATCAATGGATTAAGTACTCTTTAACATAATGGATGTGTTGTTTGTGTGATACTATAAAGTTGGTAGATTGTGACTGGCTTAAAAAATCATTAATTAATAATAGGTTATGTTTAGA # Right flank : CCATATAACCCGTTATCTCTTTCTCAAGTTTTTATATTAGCAGTACTTGTAATAAGCAACATATCCACGTAACCCCTCATGTTCAAAATAGTTCTCCATGCCAGAGAAGTTCACAATTATCGATACAAAAAATTAAATTTAATCAAAGTGTTATTTGTATGATTCTTAAATCGTTAAGAAATTTTAATCTATTATTTTTTTAATGTTGAATTAATATCTATTAATTTTTTCTTTAGGTTAATAGTTTGTTTTTTAAGCTTGTTATTCATTGATTAAGTAATAAATCTGAAAATTTGTCTTTGTTTTGAGGCTAATGAGTGGTTTTACATTACCGTTTCTATACGCTGTTGATGAATAGTTCTTATGAATAAAGATATCCAGTTCATACTTTAAGTGAAAATTGATAAAGTGCGATTCGTATTGTCTTTTATTCTAAAGACATCGAGTGTAGTTAATATTCCTTGTAAAAACAGGGATAAACCGAACTAGTTAAAGTTTTT # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [68.3-75.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //