Array 1 3246058-3247479 **** Predicted by CRISPRDetect 2.4 *** >NZ_JZII01000001.1 Xanthomonas albilineans strain REU209 Xal-REU209-G1-Mol001, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================== ===================================== ================== 3246058 31 100.0 35 ............................... ATTCGGAGCTGTGCGACCGCATCCAGGATGTTGGA 3246124 31 100.0 37 ............................... TTCGTAGAGACCGCGCAGGAACGGATCGAGTTGCAGG 3246192 31 100.0 35 ............................... ATGAAACCGGCGGTGGACTGATGCGCTCGAAGAAG 3246258 31 100.0 35 ............................... GTGCATGAGTGGGGGTTCCTAGCGCAGTCCGGGGG 3246324 31 100.0 35 ............................... TACCCGGCGCGCTGACCATGACCGCTCGCCTGCTG 3246390 31 100.0 35 ............................... TTTGTCCGCCAGCGCCTTCGCTCGCCGCATCTGGT 3246456 31 100.0 36 ............................... CACCAATCGCGCTTCGTCCTGGCGCCGCGCACACAG 3246523 31 100.0 36 ............................... GAGCAGAAAAAGCGATGACCCGCCTCCTGCCGATCG 3246590 31 100.0 35 ............................... TGCTGCTACTTGTTGTTGTATCTCAACTGCGTGCG 3246656 31 100.0 34 ............................... TGGATGCTCATCACTGCGCCTCCCGCGCGACATG 3246721 31 100.0 34 ............................... TTCGAGCGCATCTCACACGCCCGGCTTCAGGAAG 3246786 31 100.0 35 ............................... TTGTACAGCGTCTGCGCCACCTTGACGTTGGCTTG 3246852 31 100.0 35 ............................... CTAACACGTGCGGTCAGAATAATTTCTGGAACCCG 3246918 31 100.0 36 ............................... TTCGCAAACGATGTCGCCCTGCCTGCGCTCAAGGGG 3246985 31 100.0 35 ............................... TTGGTCATGCGGCGCTCCGCTGCTGCATGGAAAGC 3247051 31 100.0 35 ............................... AAGCCATAACGCGCTGCTGCATTATGTGGGGGGAG 3247117 31 100.0 35 ............................... CCCCGCGCCCAACACAGCAGCCTGCCGCGCAGGCA 3247183 31 96.8 36 ...................A........... TGCTGCTCTGTTGTCGCCTGGTTCGCCCGCTCCAGG 3247250 31 100.0 35 ............................... ATGCTTCGGTACACGCTGGAAGACCGCGAATGGCT 3247316 31 96.8 37 ....................C.......... CATCGGCTCACAGCACACGCCGGCCTCGCGCTGCACC 3247384 31 100.0 34 ............................... CTTGTCATTTCGCACGCTGGTGGTGGCTAGGCTA 3247449 31 90.3 0 ............A......C..T........ | ========== ====== ====== ====== =============================== ===================================== ================== 22 31 99.3 35 GTCGCGCCCTCACGGGCGCGTGGATTGAAAC # Left flank : ATAAAATGGCAGTCGTCACATGATGGTCTTGGTCAGCTACGATGTCAGCACTAGCTCACCGGGAGGCGACAAGCGCCTGCGCAAGGTAGCCAAAGCCTGTCGCGACCTGGGTCAACGCGTGCAGTTCTCGGTCTTCGAGATCGAAGTGGACCCGGCGCAATGGACCGCACTACGACAACGCCTGTGCGACCTGATAGACCCGGACATCGACAGCCTGAGGTTCTACCACCTCGGTGCAAAGTGGGAAGCCCGCGTCGAACACGTCGGCGCCAAACCCAGCCTTGACCTCAAAGGCCCACTGATCTTTTGACGCGAACCCCAAGCGACCGGGAATTCACCCGCAGGTTCGCAAAAAATGCAAACTATTGATATAAAAAAGAAAGCCGACTCTCAGACCCTCCCCCCCCCCGGACACAAGAGCATGCAATCGCCCGGTCGAGATGCGATTCGCGAAAACAGGTTTTTTCCTCAAGCACACGCCAGGCTTTATCCTGACGGGG # Right flank : CGAACACCTTGGATTACTCCACCGTCACCGACTTAGCCAAATTGCGCGGCTTGTCCACATCGGTGCCGCGCGCCAGCGCAGTGTGATAGGCAAGCAATTGCACCGGCACGGTGTGCAGCACCGGGCTGAGCAGGCCCGCGTGACGCGGCGTGCGAATCACGTGTACGCCTTCGGATGCGTGGAAATTGCTGTCCTGATCGGCGAAGACGAACAGTTCACCACCGCGTGCACGCACTTCCTGCATGTTGGATTTCACCTTTTCCAGGAGCGCATCGTTGGGCGCGATCACCACTACTGGCATGGTCGCGTCCACCAACGCCAATGGGCCATGCTTGAGTTCACCAGCGGGATAGCCTTCCGCATGGATATAGGTGATTTCCTTGAGTTTGAGCGCGCCCTCCAACGCAATCGGATAATGCAGTCCGCGACCGAGAAACAGCGCATTGTGCTTGTCGGCAAAACGCTCGGCCCACACCGCGATCTGCGGCTCCAGGTTGAGC # Questionable array : NO Score: 9.22 # Score Detail : 1:0, 2:3, 3:3, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCGCCCTCACGGGCGCGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [5,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGCGCCCTCACGGGCGCGTGGATTGAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.20,-7.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [48.3-46.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.41,0.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 2 3434848-3436257 **** Predicted by CRISPRDetect 2.4 *** >NZ_JZII01000001.1 Xanthomonas albilineans strain REU209 Xal-REU209-G1-Mol001, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 3434848 28 100.0 32 ............................ ACGGAAAAGTCGAAGGAAGAACAGGGAACGCT 3434908 28 100.0 32 ............................ TTCACGCGCGCAAAGCAGCTAAGTCAAGACTG 3434968 28 100.0 32 ............................ TTCAGGCGGCGCTGGCGCGTACATCGACGTGT 3435028 28 100.0 32 ............................ GTTGCCGGCGTCCCGCAGCCCGGGCATGTCGT 3435088 28 100.0 32 ............................ TTGCCCAAACAAGGAATGAGGATTGGAAAACC 3435148 28 100.0 32 ............................ TGCAGTGGGTAGGCATCCGGGCCGAGGAAAGC 3435208 28 100.0 32 ............................ GAACGGCTCGCCGCGGTGCGACCAACTGTTGA 3435268 28 100.0 32 ............................ ATGTCCATCTTTGCGTCACGCAGTTGAGATAC 3435328 28 100.0 32 ............................ ACAGCGAAGGCGGTGCTGATATCGCTTGCCGA 3435388 28 100.0 32 ............................ TGATCCCATTCGCTATCGACTCAGCCATGCGA 3435448 28 100.0 32 ............................ AATTCCAAGGCCAAGACTTCTGCGCGATAGAT 3435508 28 100.0 32 ............................ TTTGACCAAGATTGCATTGCTCGCCGCTACGC 3435568 28 100.0 32 ............................ ACGAGGCACAGCAGCGCGGCTGACTTACTCAG 3435628 28 100.0 32 ............................ AGTTCCAGCGCAAAATTCACCGCGCCCGCCGC 3435688 28 100.0 32 ............................ TGAGGAAAAGCCATGAGCGACAACGTCGTCCG 3435748 28 100.0 32 ............................ AGCCAGCGAGGTATTGCTCCCACGCTGCTTGC 3435808 28 100.0 32 ............................ TGTCATCCCCTCAGTTCATATTAGTTGGTGGC 3435868 28 100.0 32 ............................ CCTCGATGCGGTGCCGGAGTCTGCATTGGATG 3435928 28 100.0 32 ............................ ACGCCCCGGCTCGTCGCGGGTATCCCTCGCGA 3435988 28 96.4 32 ............T............... GCGAATTACCACTCGCGCACGCCGCAGTACAA 3436048 28 96.4 33 ...........................G TGGCGCAATCTCCTTCTTTTCCAGCGCATACAC 3436109 28 100.0 33 ............................ ACGACTGCCCGGCATCATGTGCTCGAGCTTGTT 3436170 28 96.4 32 ............A............... TGTTGGCCGCTCGATAGCCACTGCGGAATGGC 3436230 28 82.1 0 ......................TGTC.C | ========== ====== ====== ====== ============================ ================================= ================== 24 28 98.8 32 GTTCACTGCCGTGTAGGCAGCTCAGAAA # Left flank : CCCTGCACCATCTGATGGCAACCACCTGGCTGCATGGCGTTCGCGACCATGTGACCATCACCAGCATCGGTGCCGTGCCATCCGAGGCAGTGCACCGACAAGTGACGCGTGTGCAGGCCAAAAGCAGCCCCGAACGCCTGCGTCGGCGTGCCATGCGCCGACATGGGATAAGTGAGGATCTCGCCGTCCAACGCATTCCAGATTCGGCGGCAGAACAGTTGCGACTTCCGTTCGTCGTACTGGGCAGCCGCAGCACCGGCCAAACCGCGTTCCCGGTCTTCGTACGGCATGGCCCCGTACAGCAAGACCCCGTACCTGGCGACTTCAGCAGTTATGGACTCAGCCGGGGAGCCACCGTTCCCTGGTTCTGACCCTTTTTTCTTACGACCAAACCCACCAAGGAAAAACAAACACTTAGCAGCCGCCCCAGAAAAAGGGGTTGGCTGCTTTTCTTTATGCGTTTATCTTTCAAGTCAAAGACTTGGATAATAGAACGCCTA # Right flank : CCAGCACTTTCAATCTTCATCTTCATGGCGTTGCGCATAGAAATCTGCTGCCGCTTCGATCAGGTAGGTATAGCGTTTCACCATCGCCTGCCAGGCCTGCGCCTCCACTTGGTGTTCGGCGTGGATATCCTCCGGCACCTCGCTGACCTCATCGATCAACTTTGGGACTTCGTGATTCCACCAACGCAGCATCAGGTCTGGCCGCTGATGCGTGCGAATCAGCGACTCCACCAGCGACTGCATCGCCGCGAATTGCCGCACCGTGCGAATGCGCTGGCCTTCCAAGAAGTGCGTGCGCTCCTGTTGCTCAGCCAACGCCTCTTCCAGGGCATCCAGCCGCTGGCGGAGGTCAGCAGGCCCTCGACCGAAAACTCTCATGCGATTACTCCCCGCCCAGCGCGAGCCGGGGCACCTGCGGTGCTTTCAGCAACAGCTTCTTGAAGTAGCTGTCCTTGTAGTAAAAAATCTTGTTGGCCAGGATCGGATAGCCAATGCCCTCA # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTGTAGGCAGCTCAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [7,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGTGTAGGCAGCTCAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [63.3-51.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 3 3515076-3515284 **** Predicted by CRISPRDetect 2.4 *** >NZ_JZII01000001.1 Xanthomonas albilineans strain REU209 Xal-REU209-G1-Mol001, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 3515076 28 96.4 32 A........................... AATCGCCGCAGCGCCCGCACTGACCGATGTAC 3515136 28 100.0 32 ............................ ATTCACCGCAGCATTGCCTGCCGCCCCCATGG 3515196 28 100.0 32 ............................ CCTGGACGCGTACGACGATGTTACGTCCATCG 3515256 28 96.4 0 .........................C.. | T [3515280] ========== ====== ====== ====== ============================ ================================ ================== 4 28 98.2 32 GTTCACTGCCGTGTAGGCAGCTCAGAAA # Left flank : GTTGGTGATCGCATGAACGCTCCAATCACCTAAAAAGCCAAGTGGTTTTGCACATTTTTTGCTTCTTTTTAGAACAGGCCATCAATGCCCCGCAAAGCCCCCACACCCTGCCGCCATCCTGGTTGCGGGAAGCTGGTTTCAGATGGTTCTGGCTACTGCGCCGACCATCAACGTGACAAGGTGGGCTGGCACAAAGACCGGCGTAATGCACATCAACGTGGCTACGGTGCGAAGTGGCAGAAATTGCGCGCCTTCGTCATGCACCGCGATCAAGGACTGTGCCAGCCATGCAAACAGTCAGGACGCTTGACGCCAGCCGTGGCGGTGGACCACATCGTCCCAAAGTCGCAGGGTGGCACCGATCATCCAAACAACTGCCAGGCGATCTGCCATCGCTGTCACGTACTCAAAACGGCGCAGGAATCGCGTCAGGGGCGCGAAGGTGCTTGATGCAAGACAATTTGGACATATGCACAATGACAACGGTCATGGCATGCTCG # Right flank : ATGCTCGGGGCATCCATCGGACTCGATGCTGGGTAGGGGGGTCAAATCCTTGCGATGCAATCGCAAAAGACCGCTCGCTCCCTCAATTTTTCGCGCGTGCAAAATGAAAAACTTTTTTTTGAACAAATCCGTGTCAGAGCTAAGCGTTGCAAGGGATTACAAGGCTGACCTGGTGCAGATCGGACAGATCGATGCGAAGCCATGGACTGCGGCAAGTCACGCGGACATGACCTCAGAACTGAAACCCTATGCGCGGTCGTAAACCTCTGCCTGTAGCAATCAAGAAGATCAAAGGCACGCTGCAAAAATGCCGAACCAACCCGCATGAGCCCCATCCCGAGGGGCAATTGGGTGCCCCCCCGGAGTACATGTCTGACATTGCCAAGGAGGCATGGATCTATGCGGTAGAGAACGCACCGCTGGGTTTGTTTTCTTCCCTTGATGCCACGGTTCTGGAACGCTGGGCCAATTGCGCAGGTCTGTACCGCGAGNNNNNNNNN # Questionable array : NO Score: 5.77 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTGTAGGCAGCTCAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [7,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGTGTAGGCAGCTCAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-5.70,-4.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [53.3-41.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //