Array 1 978-1333 **** Predicted by CRISPRDetect 2.4 *** >NZ_NSLQ01000070.1 Porphyromonas gingivalis strain WW2952 NODE_70_length_5710_cov_13.2579_ID_22861, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ==================================== ================== 978 30 100.0 36 .............................. TTTCTGTCTTGACGCGTCGCAATATCTTCACCTTCT 1044 30 100.0 35 .............................. AGCCTCCACCGTTGCACTGTCGACTAATAAATAGC 1109 30 100.0 35 .............................. TGAGCACAAGCCCCGTGCGGCAGCGGCGGATCTTC 1174 30 100.0 35 .............................. CCGTGGGTTTATGGAAATGCTGTAATTCAAACAAA 1239 30 100.0 35 .............................. TTCGCCCTTTAGCTTCTTGAACTTCTCCAAGTCCC 1304 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ==================================== ================== 6 30 100.0 35 ATTTTAATTCCTGTATGGTGCAATTGAAAT # Left flank : CTACCCTGCTTTGCAGCTCCACAAAGCGATTATAAGAGACAAGATGTGGGAACTCGGATCGACAAGAATGGGTAATGTATTGAAGATAAAAAGCTTTCAAATCTCGGTATCTTGACAGATGAAACAGGATCAGGATGGTCATGACCTCACTGTCCGACATCTTAAACTTTCTATTCCTGCGTTTTTTGTCTGCCTCTTCGAGGGTCTTTTTCTTGATTGTTTCATCAAAAAGCTTGGAGAAATCATCTATGATGCAAAAAACATCAACTATATTTGTCTTCATAAAGTAGCGTTTTGTTTGTTCGTATCTTATTGATTGTCAACTGCTAAGATACAAATAATTCGCTACTTTTTCAAGCATAATGCCCACGTTCTTTGGGCGTTTACCACTAATCAGAAAACAAATTCATTGGTGTTTTCTTACGTCGAACTGACGTTAAAAAACAAGCCAAATAACCCCGAAACTAGTTGTCAGTTTTTGGAAGTAGTATAATGGATAC # Right flank : TCCGTTACAAATATAGGCTTTTCTGTTTGAATGTGAGGAGTTTACGAGAAGGTGAAACCCAAAATTCAGACATTCATAGTTGTCGATGTCTGATTCTATGAAAAACCAAGAGGTGTGACGACTGATATATTTTATTGATTATCAATCATTTCAAAGATCGCCGGAGGTTAATCATGGCAAAAGACTTGATGAATTTGCTCGAGCCGACGCTTCAAAAGATAGATAGCGGGAGCTGTATCGTGCTGTATTATAGAAATATATCCGTTGCAGAACGCTCTTTGCCAATTATTTCTTTTTCCAACCAACGTTCTTGTCTGGAAGAAAATATGATCAGACTATCTTCTTCTTTTTCCATAATTCCGGCTGCTCTGCTCTTCAGCTCTAAGAGCTTGACTTCCGATATTTCCCCCTCGAACACAGAGTTCTGAATCCAATTCAGATATTTTCTGCACAGTTTTAACATTTTGCCAACACGCTTTTCACCGATATCGTACACTAAA # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTTTAATTCCTGTATGGTGCAATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:73.33%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.40,-0.20] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [65.0-60.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.5,0 Confidence: HIGH] # Array family : NA // Array 1 151786-152282 **** Predicted by CRISPRDetect 2.4 *** >NZ_NSLQ01000001.1 Porphyromonas gingivalis strain WW2952 NODE_1_length_232642_cov_10.5722_ID_22723, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 151786 36 100.0 30 .................................... AAAAGGTAGAAAAAGAATATCTGTTTGAAC 151852 36 100.0 30 .................................... TCTAGGGACTCTGTGTGCTATTATTTCTCC 151918 36 100.0 30 .................................... CACAATGATATTCGAACTCTCAACGAACAA 151984 36 100.0 30 .................................... TAAATAAAAGAAATATAGATTATAACTACT 152050 36 100.0 29 .................................... ACATTGATAATCTTGTTATTGACGTGTAT 152115 36 100.0 30 .................................... AAGAGATTATATCAAATAACTAAGTCATCT 152181 36 100.0 30 .................................... AGCGTAGTAGGCATCTTCCCGCTCCGCTCC 152247 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 8 36 100.0 30 GTTGTGTGTACCCTTCGAATAGAGGGTAGATCCAAC # Left flank : ATCGTTTTCATTTTGTATATAAATCATTTTTAATTTATATATAAATCGATTGGGATAAATATATAGATTGTAAGCCCGATTTGATATAAATCGGGCAGATCGAAAGGCCTTTAGGGGAGGTATAAATAAAGAGGCACCCACCGAGTTCCTGCAGGAACTTGATGGGTGCCTCATCTATTTCGAAGGGGTACGAAACGACTCTCAGGCTCTACCCCTCATACAGCAGGCTTGTATCAGCCATACGCGCCGGCATATAACCACACAGGCCGAACGAAACCGGCCGAATAAGAATGCAGGAAAGAGAAGGATCGGAGCACATATCTATCATTCATTTAGTCGTTTACAAAGTCATTCCATAGAAAGGGAAAGCTCTCCCCAGTACAAATTCACAGAAGAGGGGAGCACCTCGTCCGCCTGCAAATTTAGCGAAAAAGCCCCAACGAGGAAGAATCCCCACACTACTGCACATTCCAACGCCCAAGCCACCAATCAAGAATCAT # Right flank : CTACCCCCATCGAATTTGAAACCGATTGAGAAGTCATCATTCCACAGAAAGTGAGTGACGCTAAGGCTTTGGAGCCACTGCAAGCCGGCGAAAAACAGTCTGTCATCATCATTTTAATGGAATATTAGGATTGAAAAAATGACTCTCTACGGTCGGGTTTATGCTATTTTCTCTCAAAAAATCATTCCTATACTCCTGCCGGTTCGCACTCAAAAGTTCAACGTTCGCTTCTTCAGTGCGATGGCTTCTCTAACGGTTTGGGTAAGCTCCTGATGAATGCTGATCATCCGTTCGGCCGTTTCGGGCTTGTTCATCACAACCCTCTCATCCGAGTTCTGCCTCTCCGAAAGCAAAAGGCCGTAAACGATACTCCTATACTCAAAGATACGGGAAATAATCTCTTTAGACAAGAAAATACCGTTCCCATTCTTATAAAATTCGGCCGTCAGTTCGGACAGGAATCCACGGATGCAGGCCGGCCTGAAATAATAGGTTTTCGC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTGTGTACCCTTCGAATAGAGGGTAGATCCAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:52.78%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-10.40,-7.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [50.0-55.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.37,0 Confidence: MEDIUM] # Array family : NA // Array 1 33975-33806 **** Predicted by CRISPRDetect 2.4 *** >NZ_NSLQ01000002.1 Porphyromonas gingivalis strain WW2952 NODE_2_length_122981_cov_8.0407_ID_22725, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ============================= ================== 33974 37 97.3 29 G.................................... ACATATTGGTAGTTTGTTGTACTTGTCTG 33908 37 100.0 29 ..................................... TATATGCAAGTAGAACAGCGATGATTATT 33842 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ============================= ================== 3 37 99.1 30 AGTTGGGAATACCCTTAGTTAGAAGGGTGGAGACAAC # Left flank : ACAAAGCTACGTTGGATGAAGTCAAGACTTTGTTGGGCGAATATGATCGCTGCCGCATCAAAATCTTCGATTGGGCATTTGCACTCGAAGGAGCCATCATGTCTGATCGCGACTTGAAGCCGTATTTGCACGAGTCGTCGAGCAGGGAGGGTAAGAGTGGAGAGCATTCTACACTGGTGAAGATGCTGGTGGAGAAGAAAGGCTGTCTGACTCCTGACGAAAGCCAATACCTGATTCTGATTCGCAACAAGGCTGCTCACAACCAATTTCCCTGCGCTGCAGAAATACCTCTTATTTACCGAGATGTGAGTGCAAAGGTCGGTAGCATTGAGGGATCTTCTGCCAAAGATCTGCCGGAAGGTAGTTCTCTGGTAGATTCATTATGGAAAAAATACGAAATGATAATTCGGAAAATTCTTCCGATTCTCGACCCTGAAAATAGATTTTTTGGAAAGCTTTTGAATAATATGTCTCAACCTATCAATGACTTATAAAGGGTC # Right flank : TATTATTCCGAAAGGAGAAAGAGGGGAAGTTGTGCTGTTGATGGGGAAGTATTCCTAAATTAGCGATCGCTAAAGTGATGGAAAATGGATAGGGGGATCGTGTTCGGAGGAGAGGGTTGTAGCCGACAGTGTTTGTGTGCAGCTATCCATTCGATCGGGAGGCCTTTCGTTCTCTTCCTTGGCTTTTGTCTGTAAATCCCGATTTCCTTAACTCATATAATTGTCTGTTCCTATCAAACGCTCTCATCTCCTTATCAGTGCCGCTTCATCGGGTGGTGGAAAGACTTCTTTCACGCTCGGATTGCTACGATTGCTTCGAAGGCACGGTCTCAAAGTGCAGCCTTTCAAATGCGGTCCCGACTATATCGATCCTAAGTATCACCGCCTTGCATGCGGAACGGAAACGGTGAATCTGGATGCTTTCATGATGAGTCGGGAGCATATCGCCCGACTCTATGATCGCTACGGCAGTGAAGCCGATGTTTCTATTGTGGAGGGAG # Questionable array : NO Score: 5.31 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : AGTTGGGAATACCCTTAGTTAGAAGGGTGGAGACAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:54.05%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-6.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [60.0-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.41,0.64 Confidence: LOW] # Array family : NA //