Array 1 296915-295422 **** Predicted by CRISPRDetect 2.4 *** >NZ_VXJV01000001.1 Salmonella enterica subsp. diarizonae strain CCUG 30040T contig_0000001, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 296914 29 100.0 32 ............................. AAACCAACAGCCGGTGATGTGGGTGCATTGCC 296853 29 100.0 32 ............................. CGGTGAATTTCAGTAACGGCAATCCGGACGCT 296792 29 100.0 32 ............................. ATGAGAACCCCGCCGACGCGGGGTTTTTGCTA 296731 29 100.0 32 ............................. GCGGCGCATATACTCTCCGGCCAGCTCCATAG 296670 29 100.0 32 ............................. GATATTGCCGTGGCTTTGGGGTATTCGAAAAC 296609 29 100.0 32 ............................. CGCAGCGCCGTGCTGGTATCACTGACGAGCAG 296548 29 100.0 32 ............................. ATACTGGCGCGCCATTACCATCGCCCTGGCTG 296487 29 96.6 32 ............................T GGCTTTCGGATCACCGCTAGCCCACGCATCGC 296426 29 100.0 32 ............................. AGTCTGGCAGACCGCAGCACCCTTCCCAGCGA 296365 29 100.0 32 ............................. CGACGGGAATCTGTGAGAGGTGTATCCTGACA 296304 29 100.0 32 ............................. TTTCCCTTGCCGTTGTTGTACTCAAACCAGTG 296243 29 100.0 32 ............................. CAGGAAGTGCCGGGATATGTGGACGAAATACG 296182 29 100.0 32 ............................. ACCCGTTTAAATACGCGTGGGCAAAACAGGAG 296121 29 100.0 32 ............................. CCAGTCTTGATACTGCTGTGTGTTCTTCCCGT 296060 29 100.0 32 ............................. GGTGGTACGGCCTTGATAGTCTTCACGACACC 295999 29 100.0 32 ............................. GTTCGATCCTGTATCAGGTCGGTGGTCTTGAT 295938 29 100.0 32 ............................. TTCAGCAGGACCCCGCACAGCACCCCGGAGAT 295877 29 100.0 32 ............................. TCCACGATAACCTAGGCTGGGTTGAAAGGGCA 295816 29 100.0 32 ............................. GATAAACTGACCCACCCCCGTTACGGGCTGGG 295755 29 100.0 32 ............................. GTGGACGACCTTGAGCATTGATTTAGGTTACG 295694 29 100.0 32 ............................. TGCAGCCCGGAATTGTCGATATAACCAACCAG 295633 29 100.0 32 ............................. ATGATTTTCTCCTCAATTACCCGCTATAATAC 295572 29 96.6 32 .............T............... TTTGCGCTCGCTGACGTCAACAGCTTCTACGC 295511 29 96.6 32 ............T................ CTGCCGGTCAGGCTGCTGAAGTTACTGTGGTC 295450 29 86.2 0 ............T............G.TA | ========== ====== ====== ====== ============================= ================================ ================== 25 29 99.0 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGTTGCCGCCAGCAATACCTGAGCCGGAATCTCTGGGTGACAGCGGACATCGGGGGCATGGTTAATGAGCATGGTGGTGGTGGTGACTGAAAACGTACCGCCGCGCCTGCGAGGGCGGCTTGCCATATGGTTACTGGAGATTCGTGCGGGGGTTTATGTTGGCGATACATCAAAACGCATTCGGGAGATGATCTGGCAACAGATTACACAACTGGGTGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACGGAGTCAGGTTTTGAGTTCCAGACCTGGGGGGAGAACCGCCGTATTCCGGTAGATTTGGATGGACTCAGATTAGTTTCTTTTCTTCCCGTTGAAAATCAATGAGTTGAACGTTCTTTAATAATAAGAAATTGTTATCTTAATGTTGGTGGATTGTTGGGTGGCAAAAAAGGCTTTCTGGAACAAATATATAGATTTAGT # Right flank : TTTTTACCAGCAGATCAGGATGTCTTTTCCGTCTTCGCCAGCTCTTTTACTAGCGGCAGTATTATCCGTACTACGTCGCGACTACGGCGCTCAATTCGTCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGAAGCATTTTTCGCGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTTGTCGCCTCAACGGAAAGCACAGAAATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGACGGATTGAGCCCCGGATTGGTGCTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCTCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGATTATCGAAATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [53.3-65.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //