Array 1 12816-12078 **** Predicted by CRISPRDetect 2.4 *** >NZ_QICI01000085.1 Chryseobacterium sp. CH21 NODE_68_length_12836_cov_256.009_ID_135, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================================== ============================== ================== 12815 46 93.6 28 ...................-...............T..C........ GTAGTGAGGTTTTTTATTGAGATCCGCA G [12780] 12740 47 100.0 30 ............................................... AATGCTTTTTCCAAAGCTCTGTCATCCCAA 12663 47 100.0 30 ............................................... ATTTATATTCATTGATACTTTGCCTCTGTC 12586 47 100.0 30 ............................................... AATGCTTTTTCCAAAGCTCTATCATCGCAA 12509 47 100.0 30 ............................................... ATTGGATTAATATATGTCAGTGATATGTAT 12432 47 100.0 30 ............................................... AAGAAATTCTTTTGCTTAAATGTAGTGATG 12355 47 100.0 30 ............................................... TTCTCTGGAGAAAATCAAATTACCTTGCGA 12278 47 100.0 30 ............................................... ATGGTAGCGTTGTTGAGGGTGATATTGATC 12201 47 100.0 30 ............................................... ATCAGACAATATATACCAATATCTTTTACC 12124 47 100.0 0 ............................................... | ========== ====== ====== ====== =============================================== ============================== ================== 10 47 99.4 30 GTTGTGAATTGCTTTCAAAATTTATTATCTTCGTGATTAGTCACAGC # Left flank : ATGATAGCACCACCAAGAAT # Right flank : CTCAAAAAATAATCTACTGAAAATCAGTAGATTATTTTTATAATTAGAATTTACAATTTAGAATAATTCGAGCTGCTGAAAGGTTGGAGGAGGTTCTTCTTTATTTCTGGCAAAAAAGATTTCGATATCCCCAAATTGCTTATCCGTAATGCACATAATAGCAACTTTCCCGGCCTTTGGAAGCATAAATTTCACTCTTTTAATATGAACTTCAGCATTTTCGCGGCTCGGACAATGACGTACATACATAGAGAACTGAAACAAAGTAAAACCATCATCAATGAGTGCTTTCCGAAAGCGGTTCGCATCTTTCATATTAGTTTTGGTCTCAGTCGGGAGATCATATAATACTAAAACCCACATAATTCGGTATGCATTAAACCTTTCGGAATTCATAACAGTTGAGGATAAGAGATCAGCCGCTTTTCTCCTGTATAACATTTATAAAGTGACGAAGCCGTTGTTTTAACAGCAACGAGCAACGGTCTTATTTTACTATC # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTGAATTGCTTTCAAAATTTATTATCTTCGTGATTAGTCACAGC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:68.09%AT] # Reference repeat match prediction: R [matched GTTGTGAATTGCTTTCAAAAATTATTATCTTCGTGATTAGTCACAGC with 98% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,-0.50] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [83.3-21.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.68,4.5 Confidence: HIGH] # Array family : II-C [Matched known repeat from this family], // Array 1 169-1 **** Predicted by CRISPRDetect 2.4 *** >NZ_QICI01000086.1 Chryseobacterium sp. CH21 NODE_43_length_38733_cov_272.076_ID_85, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================================== ============================== ================== 168 47 100.0 30 ............................................... AACCACTCTTGAATTTTAGTAGCTTTCCTT 91 47 100.0 29 ............................................... CTGCGCTATTGCGCCCATGCACTCATAAA 15 15 31.9 0 ...............-------------------------------- | ========== ====== ====== ====== =============================================== ============================== ================== 3 47 77.3 30 GTTGTGAATTGCTTTCAAAATTTATTATCTTCGTGATTAGTCACAGC # Left flank : CAGCAAGTGTTCCCCAACGAGGTGCCATACCTCCTTTGTGGAAAGCTTTCCAGTTTACTACTGAACCTACTGCATCTACTGCCAGCGTTTCACCTTTGCTTTCTGCTACGGTTTGTTCCTGAGCGGTAGCAGCAGTTTCTGCTGTTTTTCCTTTATCACATGATGCCAAAAGCAATCCTACTCCTACTAATGCAATTACGCTAATTTTTTTCATATTGAACTGTTTTAAAAAAGTTTATTGAAATTTTGTTGTTTTCGGGTACAAAAATAGAAAAACCTGCTCTGTATGATCTTATCATATATCAAGAAATGTAAAATTCTGCAATTATTTTCAATCATATATCCATTTTCTGTATAAATCCCATCTGTATTGAGAATCAAAACTGCCGGAATCTTATACATTTAAAATTTCAGAAATACTGTTTCAAGGCCAAAATAAAAAATTTATTATTTTCGTGATTAGTCACAGCTGTTGTTAGTTCCTGCTGAATTATTCATGG # Right flank : T # Questionable array : NO Score: 4.22 # Score Detail : 1:0, 2:3, 3:0, 4:-0.14, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTGAATTGCTTTCAAAATTTATTATCTTCGTGATTAGTCACAGC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:68.09%AT] # Reference repeat match prediction: R [matched GTTGTGAATTGCTTTCAAAAATTATTATCTTCGTGATTAGTCACAGC with 98% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,-0.50] Score: 0/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [0.0-0.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.91 Confidence: HIGH] # Array family : II-C [Matched known repeat from this family], //