Array 1 204817-203241 **** Predicted by CRISPRDetect 2.4 *** >NZ_QAOO01000001.1 Nitrosomonas nitrosa strain Nm90 Ga0181054_101, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ====================================== ================== 204816 36 100.0 35 .................................... CGAGACAATCCTTCTTGACGTACCGTATCGCAGGT 204745 36 100.0 36 .................................... CTGACTTTGGTAATGGTGTTTACTAGATTTTTCATG 204673 36 100.0 34 .................................... AAGTTCTTCAAGTTTTTCTATCCGTTCAATAATG 204603 36 100.0 32 .................................... ACATATCGTTATCGCTTCGCTGCTAACGAAGG 204535 36 100.0 32 .................................... CTGCTGCTAGTGTGTCATCTTCAAAATGCGTT 204467 36 100.0 34 .................................... GATATAAAGTTGTTTAATTGTCCAAGCTGGTAAT 204397 36 100.0 35 .................................... ATTGTCGACTTCCTCAATATAAGCATCGTCGTCGG 204326 36 100.0 33 .................................... TTTACTAGTTAGTTCTTTTGGTTTCTAGGACAA 204257 36 100.0 34 .................................... ACTACAACCACGTCACCAACTACATACTTTGTCT 204187 36 100.0 33 .................................... TTTCCAATACTACTAAGTTCTTGCCTTGCCAAC 204118 36 100.0 33 .................................... CTCTATATGAGTTTATTGTTACTGATCCGTTTT 204049 36 100.0 34 .................................... TTTTTTTCGATAGAGTGATTGCTTCAAAAATGTT 203979 36 100.0 35 .................................... CTTGGTTGATTGACGGGCTTGTGACTTTGGTAATG 203908 36 100.0 38 .................................... ACTTACTCTGAGAGTTCGTTATCCGAATCCTTCCTGCT 203834 36 100.0 34 .................................... AGTCCGGTGAGCGCGTAATTAAACTCAAGTCTTC 203764 36 100.0 34 .................................... TCAGATGCGGGTGTTGATTTTTTGATCACCGGTG 203694 36 100.0 33 .................................... AGCTAATATTCTCGCCTTTACTATCATTTTTTC 203625 36 100.0 34 .................................... AGAGTACGGAGTTATCTCTTTTGCAGATATTAAG 203555 36 100.0 33 .................................... TTACGGCCATGCTGTTGTTTTTCAGCTGATCGA 203486 36 100.0 34 .................................... GAAATATTTCTGCGCAATGGCTTCACTATCAAGG 203416 36 100.0 34 .................................... CAAGATAAATAACCCTATCAAAACAAGCGATGTG 203346 36 100.0 34 .................................... GTAATAAATTCCTTCGCATTCTTGTCCAGCCACT 203276 36 94.4 0 ..................................TA | ========== ====== ====== ====== ==================================== ====================================== ================== 23 36 99.8 34 GTAGACATACAGCCCTGATTTAAAAGGGATTGAGAC # Left flank : GCACGCCCTCAGAGCGGATCACACTACAATTCGATACCCCACTCAGACTACAACAGGATGGACACGCCTTGCCGCCTTCCAAGCTCACTGCGCGCACCCTGCTGATGGCGTTGGTTCGGCGAGCCAGCTTGCTCGCTGAAATTCATGGCGGCAAACGACTCTATAGTACAGAAGAATTTTCTGAATTGGCTGAGCATGCCCAACAAATTACAAGCCATCATCATCTTACTTGGCGCGACTGGACACGACATTCATCTCGCCAGCGACGTACCATGCAATTGGGCGGATGTATCGGCAAATGGCAGTTGAGTGGCAATCTAACTCCATTCCAGTCATTGCTACGGCTAGGATCATGGCTGCATGTCGGCAAAGAAGCCAGTTTCGGTCTTGGTAAATATCGCATTATCGAGGAATAAAAACCCTATGTTTGTACATACCCTCAAAACTCGCGAACTCACTCGGCAACCAATTGAATGTGATATAAAAAATGGGAATGGTGA # Right flank : ATTTATCAGAGTTAGCACTACTGATATTTGGCAAGCTTGCCAGCCAAGTTGGCTCTCTTGCTTTCACTTATACTCTTGATCATTCCAAAACAGAAGGTAGTCAAACGCTTCTTGTAAAACCGATTCGATATCAGGTTGAATGAACAGAGAACAATGCCCATGAATTCACGTTCAATTTATTTAATTTGCTATGACGTATGTTGCCCACGGCGGCTAAGACAAGTTCATCAGTTTTTGTTGGGCTATAAAACGGGGGGGCAAAAGTCTTTTTTTGAATGTTGGTTAACCCCACGGGAGCTGCGTGACGTCAGAATGCGTCTGATTGAACTGATCGATCCTGTCGAAGATCGTGTGCATATCTTCCAGCTCGATCCGCGCATGACACCGGTTTGCTATGGTGTTGCCGTTACCCGAGCAATCAATACACCATTTATCGTTACTTAGGAGGTAATTTTGACGAGTCTTTACGTTGATAGACGAGGTGTCGAATTGGAAGTGGA # Questionable array : NO Score: 3.25 # Score Detail : 1:0, 2:0, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTAGACATACAGCCCTGATTTAAAAGGGATTGAGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:58.33%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-3.80,-6.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [56.7-60.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.78 Confidence: HIGH] # Array family : NA // Array 1 16196-17438 **** Predicted by CRISPRDetect 2.4 *** >NZ_QAOO01000008.1 Nitrosomonas nitrosa strain Nm90 Ga0181054_108, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ============================== ================== 16196 37 100.0 30 ..................................... GTCGAAACGGTAGAGAAGTTGTCATGCGCA 16263 37 100.0 30 ..................................... ACCTGTATGTACATGTGTTCATGCATTTTT 16330 37 100.0 30 ..................................... GAATGCCAGGTAATTGATGCCTGTGGCCAC 16397 37 100.0 30 ..................................... CAATAAATTTCTATGTCTATAAAATCTATT 16464 37 100.0 30 ..................................... GCGAATACCCGGAAGTGATCAAGGAATGGC 16531 37 100.0 30 ..................................... CACTGCCGAGTATTACCTCTCCGCTCGCGG 16598 37 100.0 30 ..................................... CGGCTGCTCCGCCGGCTGGCGGGTGTCGCG 16665 37 100.0 30 ..................................... TTCTTACTCTGCCGCCAGTAAAACAATCTC 16732 37 100.0 30 ..................................... GTAAATACATGAATCGTCTATCTCTTCATT 16799 37 100.0 30 ..................................... CAAATTTATAGCGCGGTATGTGAACTGTCT 16866 37 100.0 30 ..................................... GCCAGACTTACCGGAAGCATCGGGGTACAC 16933 37 100.0 30 ..................................... TGTGCGATGTGTGGCAATCTGCCGGAAAAG 17000 37 100.0 30 ..................................... AAATTGGATGACGGAGAAGTCGAATAATGA 17067 37 100.0 30 ..................................... ACAAAAACAGACTACTCGCTACATATTGTG 17134 37 100.0 30 ..................................... AAATTTTGACGAAATTAACTATCGCGTCGA 17201 37 100.0 30 ..................................... TATGAGTCAAAGTTTTTCTATTGAATTCGA 17268 37 100.0 30 ..................................... CGATCAGCCAATAAGGCGCGGTCAGCAGAA 17335 37 100.0 30 ..................................... CTGCTGGTGGTACGGTCATATTTATTACCA 17402 37 89.2 0 .......................A..A....G...T. | ========== ====== ====== ====== ===================================== ============================== ================== 19 37 99.4 30 ATTGTAGTTCATCCGGGGTGAGAGAGGGAGCTACAAC # Left flank : CAATCAGTCGAGAGCATTGCGCGTCTCTATGAGAGAAACGATAAGGCCTGTCTAGAGTTGCCTAGTTTGATCGGATTAGCATCCCATCAGCTGGAGTATTAAATTGTGAGTAAGGAGACTCGGAGATATATGCGCTTACTTGTTTTCTTTGATCTCCCGGTTGTAACTAAAGCGGATCGTCGCGCTTATACCATTTTTCGACGTTTTTTGCTCAATGATGGCTATGATATGATCCAGTTCTCGGTATATGGACGGATTCTCAATGGAAACGATGCATTAGAGAAGCATATGAAGCGCTTAATCGACAACTTGCCGCCGGATGGATCGGTACGCTGTTTAAGTGTCACTGAAAAACAATTTGCTAGTATGAAATTGCTTGTCGGTCTCCCTCTTTTTCAAGAAAAAAAAGTCAATCCTCAACAATTACTGCTGTTCTAAGCAATTTTTTTTACTCAAAACACCCTTCACATGTAAGTGGGAAGGGTGTTTCTGTAAGGTCT # Right flank : CAGATTCTCTCACAAGCTTCAGCAACTGCTGCAAGTTTACGATACCGTGCGATCCATGATAATGGAATGGAAGAAGCCATATTTTGCTGCTTGGCATGATGTGCTGCCACTAACGCACCAAGAATAATGGCACGGCCGCAGCTATCCCCACCGGCTCGAATGTTGGCTTTGATCGCAGTCGTATAATCCGGCGCATGTTTAGCGATATGAAAAACGATGGGTAGCCCTTCAGTTACATGACATGCGGAGCCAAAGTGGCTAGCGGCAGATACGCTATCCAGCTTGTCGGTTGCGAGCGCTGCCATTAACGATGGTTTCAATATATCGCCCGAAACTTCCATGGCATTGGTCAAAGCTTGTGCCATCGATTTACCTTCTAATAGGCTTTGCAGCGCTGTAGCAGCGCAACATGCTGCGGAAACGGCGATATCATTGTGATTGGTTATGCGCACGACTTCCTCGACACGTTTCATGAGCACTGCATGTGAATCCTCGTGAGT # Questionable array : NO Score: 3.23 # Score Detail : 1:0, 2:0, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTGTAGTTCATCCGGGGTGAGAGAGGGAGCTACAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [10,8] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-3.80,-0.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-55.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [1.15,0 Confidence: HIGH] # Array family : NA // Array 1 11137-3602 **** Predicted by CRISPRDetect 2.4 *** >NZ_QAOO01000004.1 Nitrosomonas nitrosa strain Nm90 Ga0181054_104, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================== ================== 11136 28 100.0 32 ............................ AGTTGTTTCGACTCTTGTCGATTGGGAGAAGG 11076 28 100.0 32 ............................ AAAAACGTGATTAACAAAATAGTGCCGCCTCC 11016 28 100.0 32 ............................ TGGATTAGATTTTCGTTACCCTGGCCATCCAC 10956 28 100.0 32 ............................ TACCGTTCGCCATGGATGCGCAGGAGATCACC 10896 28 100.0 32 ............................ TTGGTGGAATCTCGTTTAAAGAATCGAGTGTT 10836 28 100.0 32 ............................ ACGATCAGCCAGGGCATGACACGTGCGTTAAA 10776 28 100.0 32 ............................ TATCAAGAAAACAAAGGAAAGCTACACCCGCT 10716 28 100.0 32 ............................ TATGAGAGATAAATTCCTTCATCCTGATTACC 10656 28 100.0 32 ............................ TTCTGGCAACAAATTGCAGACCCTTTCTCTCA 10596 28 100.0 34 ............................ TCCAGACCAATCATATTCAGCGGTGAGATGGTAA 10534 28 100.0 32 ............................ AGAAAATTACCGATTTCAATCAGTAGCAAAAC 10474 28 100.0 32 ............................ ATCGCGCCAGGCGTTTCAGCATACCGCTTGCT 10414 28 100.0 32 ............................ CCTGAATTCCTCAAGGCATGCCGCCCATCGTT 10354 28 100.0 32 ............................ AGCCTAGCTCGCTCGCTCTTTTCTGCGAATAA 10294 28 100.0 32 ............................ CATGGATGATAGGAAATGAAGGGAAGAACGTT 10234 28 100.0 32 ............................ TGATAAGAACAAGGCGCTCGAGAATCTAGCTA 10174 28 100.0 33 ............................ CTAGGAATGCTGAATAGGCAAGAAGCTCTATAT 10113 28 100.0 32 ............................ TCTGGAGGGATTACGAGCCTTTCTGCGCTTCG 10053 28 100.0 32 ............................ ACTCGCAAAACGGGTCGTTGTGGGCCTTGGTC 9993 28 100.0 32 ............................ GTCTGCGGTTACAGTTGGACAGTCAGCAGCAA 9933 28 100.0 32 ............................ TATGTAGTAAAACAAACGTATCACCTAATTCC 9873 28 100.0 32 ............................ TTAATCACCCAAGCGCCGCACTTGATACACAA 9813 28 100.0 33 ............................ ATGAGGTTGAATCAAATGTTACCGGATGCTCTA 9752 28 100.0 32 ............................ ATTCATACCGGACGAAGAACGCGAGCGGGATC 9692 28 100.0 32 ............................ AGAAACCTGTAGAAAAGCGGTCGAGGCCGGAT 9632 28 100.0 32 ............................ AACGGATCAACGCCCGAGCCTGTGATTCGCTA 9572 28 100.0 32 ............................ CATGACATGAGTCCAGTCACAATTATCATATT 9512 28 100.0 32 ............................ TAGTAACACTGTAACGATGTTCATTCGACTTT 9452 28 100.0 32 ............................ ATACGGCAAAAACGGTTTTACCTCCGCCTGGG 9392 28 100.0 32 ............................ TAAGAATGATTAAAACCGGTAGAAGGGGCCTT 9332 28 100.0 32 ............................ CAGTGCTTCGGCTTTACCGAAATTCGTTTTAA 9272 28 100.0 32 ............................ TAAGAAGTTTAGCCTCACAGGCAACTCTTTAC 9212 28 100.0 32 ............................ ATATGCTCAAAGCTTACATTAAACATATCGAA 9152 28 100.0 32 ............................ AGTAGATATTCATGAGTTGAGAGAACATCTAG 9092 28 100.0 32 ............................ TCCCCCCCATTTCTTTGATGAGGGCATTAAGT 9032 28 100.0 32 ............................ AAAGCATTGGAAGAATTGATTGATGAATTGGT 8972 28 100.0 32 ............................ TCAAGTTCTTGCTGTGCTAGCCATTGCTCGTA 8912 28 100.0 32 ............................ GATGCCGTGCTTCGAGAACGAGCCTCCCTAGA 8852 28 100.0 32 ............................ TCTAGTTGAACATCGCCGACCCCATCAAAGCT 8792 28 100.0 32 ............................ AAAAGATGCATATGGCCTTTACAGATCTGCAA 8732 28 100.0 32 ............................ AGAATAATAATGCTACGATTACGATTTTAAAA 8672 28 100.0 32 ............................ ATAGTTCCAACGTCTGTTACTGCGGTATCAAT 8612 28 100.0 32 ............................ AATATCCAAAGCTGGCTCAATTCTGAGGGTCA 8552 28 100.0 32 ............................ TGCATGCCCACAAAGAAGAAGAGTTCTGGTTA 8492 28 100.0 32 ............................ TGCGAGACAACGCATTGTCGTGCTGGCTGGGC 8432 28 100.0 32 ............................ ACCGTTAGTTTATGTTTAGCCCATTTTTCTTC 8372 28 100.0 32 ............................ TAAGATGGATATAGTGTACAAACTAATTGATG 8312 28 100.0 32 ............................ AGAAGAACTGGAAACACTTGATCATGATGTAA 8252 28 100.0 32 ............................ ATCAGGGTTAGCATTGCGCGGGAGATCATGAG 8192 28 100.0 32 ............................ CCTTACGCCACGCCAGCATAGCTTTATTGGTT 8132 28 100.0 32 ............................ AACCGATACATCAAACGCCTACGCAGATGAGC 8072 28 100.0 32 ............................ TTAGAAAGCGCGAAAGGTAAATTGGGGTTGAT 8012 28 100.0 32 ............................ CAGGCCAAATGACCACAGTACAGCACCGCTAG 7952 28 100.0 32 ............................ CCCTGTCGGGTTTTCCGCGCTGGCTTGTGATA 7892 28 100.0 32 ............................ ATCAAGAAAGGTTATAAACTCCCTACACAAGC 7832 28 100.0 32 ............................ ACAACTAGAATGCACATGACTATTCTCTTTTA 7772 28 100.0 32 ............................ TCTGTAGGCGCAATCATGGAACAAGCGATCGA 7712 28 100.0 32 ............................ TGGGCGAAATCTTCGCAAAACCCGAAGCCGGA 7652 28 100.0 32 ............................ TTAGGGGCGTTTCTATGTCTCCTTCACAGAAT 7592 28 100.0 32 ............................ ACATGACTAGAACCTCCCCTGCGTCATACCTT 7532 28 100.0 32 ............................ ACCCGATCATCGGTATCGACGGATAAATATCG 7472 28 100.0 32 ............................ AATGACCACGGCCACGGCGATCAACCAGGGGC 7412 28 100.0 32 ............................ GCTACTGGGTCAGTCGATTCGTCTATCGCGCA 7352 28 100.0 32 ............................ CACCCAAGGGCCGCTCGGTTTTTCAGCGCTAG 7292 28 100.0 32 ............................ AGCAGCGGATACCCGTTATTAACCGTGACGTC 7232 28 100.0 32 ............................ AGTCCGGCGCCAGCGCGCCCGTTTATGTGCCA 7172 28 100.0 32 ............................ CAGCACCGCCGTAGCGAACAAGCCACGTTTTA 7112 28 100.0 32 ............................ TCGCAAAACGGCGCTTTTTCATTCAACACCGC 7052 28 100.0 32 ............................ AGCACGTCGTAAATCCCGCCCGCTGGCCTATC 6992 28 100.0 32 ............................ GGCGTCATACGGCGCATCTATCTGTACGGTCG 6932 28 100.0 32 ............................ TCACTCAGAACGGCTCGTCCGTTTTACCTATC 6872 28 100.0 32 ............................ ATTTTTTAACCCTCGAAGTTAAAAACCCCGCC 6812 28 100.0 32 ............................ GAAGCGGGGTTATCGATGTATGAATGCGCGTT 6752 28 100.0 32 ............................ TCTGGTATCTGTTGCAGCTGTTCCAGCGGCTG 6692 28 100.0 32 ............................ TGCACCTGGTGCGGCGGTAATTAGTAGGATAC 6632 28 100.0 32 ............................ AGATGGGGGAACAGCAATTACTTGCACATCCA 6572 28 100.0 32 ............................ ATTTGGGCATCTTGCCGAACTTGGCAACATAA 6512 28 100.0 32 ............................ ATCTTGCTGAATCGCGCTCAATTGCACAGGAC 6452 28 100.0 32 ............................ ATTTGGGCATCTTGCCGAACTTGGCAACATAA 6392 28 100.0 32 ............................ TCAATTTATTATTATTTTCCGCCTGACCCTGG 6332 28 100.0 32 ............................ TTCGACAAATCCCATTTGGGCATCTTGCCGAA 6272 28 100.0 32 ............................ ACTAGAACGGGGTTTTCAGGGTCAGGGCACGT 6212 28 100.0 32 ............................ AGTTATGAGAGTTAGCATTATTGTCCACCTCC 6152 28 100.0 32 ............................ ATATCGCGCCCATTGTTTTACCGCTGCCTGTT 6092 28 100.0 32 ............................ ACAGCCAAAACAGTCGGATCGTTACGCTCTAA 6032 28 100.0 32 ............................ AAGTGACTTGGTACTTCCCTGCCCATGAACTT 5972 28 100.0 32 ............................ ATAGCCCCTCAATCTCATCGCGTGAGCTTCCG 5912 28 100.0 32 ............................ TGTGGTGCCCACCGCAATTGGTACTAGCGATA 5852 28 100.0 33 ............................ CATAATAAAAACGTGTATTTCTGCAAATTCAGG 5791 28 100.0 32 ............................ ATAGAATAATCGCTACAATACCAATCACTGCG 5731 28 100.0 32 ............................ AAAAAGTGCAAGCAATTCGAGCACAGCCGCAC 5671 28 100.0 32 ............................ ATAAATCCCCCATCACTATAAAGGTTTTCATC 5611 28 100.0 32 ............................ GCCAGGCAGACACGTTTTAGTATTGTTAATTT 5551 28 100.0 32 ............................ AACTTTTTCAACGGCAGAAACGGCAGAATCTA 5491 28 100.0 32 ............................ ACTCGTCAATCTCTTCGTAATAGTTCTGTACT 5431 28 100.0 32 ............................ TGCAAATCCCCCTACTCATTCCTGCAAAGCTA 5371 28 100.0 32 ............................ GAGGTGCGGGTAACAAGCTCGCTGCAATGGTT 5311 28 100.0 32 ............................ CAGGGGGTAGTCAATAATGCTAACTCTAATTA 5251 28 100.0 32 ............................ TGCTGTCTCATTCGCTGCTGTACCTGCTGACG 5191 28 100.0 32 ............................ TATTAGACCTCCTTCGGGATTTGTAACATTTA 5131 28 100.0 32 ............................ CTGAAGAATGGCAGCAGGCATTGGCAGAACAT 5071 28 100.0 32 ............................ TGTTACGGCATTACGACCGACTACACCTGAAG 5011 28 100.0 32 ............................ AGATAAACCGTTCCTGATAGAGTCCCTATCGA 4951 28 100.0 32 ............................ GATAACAGAATCTGCCGGAACGGACACTTTCA 4891 28 100.0 32 ............................ TCCCGAAAATCCAGATGACTGCCCGCCAGGTA 4831 28 100.0 32 ............................ ATTTACCCCGATTTCAGGCGTGGGCGATGCTA 4771 28 100.0 32 ............................ GCCGCCAGCCCATTCCCGCACCCCGACAACTA 4711 28 100.0 33 ............................ GGAAAATCCTCGATGCGCTGGTTATATTGATCG 4650 28 100.0 32 ............................ ACCTTAAATCCGTCTATTTCTCCCGTTTTTTC 4590 28 100.0 32 ............................ AGTAGATATTCATGAGTTGAGAGAACATCTCA 4530 28 100.0 32 ............................ TATAACCTTATTTGACTTAGGGAAATCTGAAC 4470 28 100.0 32 ............................ AGTTATCAGCCCGTATTGATTCGCTTTCAAAT 4410 28 100.0 32 ............................ GATGTAATGATTGGGCAATCCGCCGCTATCAA 4350 28 100.0 33 ............................ CAGTACCAAATAAAGCGAAAATTTAACCATTTT 4289 28 100.0 32 ............................ TACCAGCACCCAAGCCAACAGCGGCAGAACGC 4229 28 100.0 32 ............................ ATAAAGGAAGTGAAGCGCCTGATCGAATATCT 4169 28 100.0 32 ............................ AGCATTTACGGGCTTTAGCGGTGCCATTGTCA 4109 28 100.0 32 ............................ TATTTGATAGGGCCCAGTAAAGTTAAATGTAG 4049 28 100.0 32 ............................ TGTGTGCATAGCTATAATGATCGATTTACTAG 3989 28 100.0 32 ............................ ACCGTCTAATGTAACTACAGCGTGCCATTGTT 3929 28 100.0 32 ............................ CTTCCTGCGTTTTATCCTGTATATACCCCTTT 3869 28 96.4 32 .............T.............. AGCACAGAAAACGGCAACGGCCGTTGAATAAG 3809 28 100.0 32 ............................ TATACGGCGTCGACTGGGGGCAAATTTAATAA 3749 28 100.0 32 ............................ TATGGTTATTACCAGCGGTTACCGCCATCCGA 3689 28 100.0 32 ............................ TTACCGGTTGTTTCTGATCGTGCTGATTGGGA 3629 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================== ================== 126 28 100.0 32 GTTCGCTGCCGCACAGGCAGCTTAGAAA # Left flank : TTGAAACCGTTTTTTCGCATCCTTCTAAAATCGATTTTGTCGCCAATGCAAAAGCGCTGGGTTACGAAATTGTGCTGGTCTTTATTCACCTTGAACAGACACAACTCAATCTCGCGCGTATAGCGCAGCGGATGAGCGAAGGCGGCCACGCTGTGCCGGATGAAAAAGTTAAGGCGCGAATCCCCAGAGTATTGCAATTGATAAAACAGGTTTTACCATTATGTGATCAAGCATCGATCTTGGATAACTCTCGTGCGGATAATCCGTTTCAGCAAATAGCGGTAATACGCAATGGGTGCCTTGAATTAAAACAAGCAACTGTTCCAGAGTGGTGCCAGGAACTGCTATCGGATTATTTGTAAGTTTTATACCCATTTTTTTTCGCTCTTTAACAATACATACAAAATCAGTTACTTATTGATGCTGGAAAAATATTGGGATTTTTGCTTGGTTTCATATTAAACGATTGCTGCTTATAGTTCTTTGGATGCTATACTTCA # Right flank : AAGGCAGAGCAAGAAAAACTGCTCGCCGCATTACGCGCCATGCAGCGCGATTCCGCCACAGTCATCCCGCAAGGCATGGAAGTGGCGCTGGTGGAAGCGCTGCGCAGCTCGGCTGCCGATCATAAAACGTTTGTCGAGAACATGAACGAAGGCATTTTATTGGTTTGCCTGGGGCAAAGCGGCACGGTCAAAGGTACGCTAGGGAAACTGGGTGGAGAAGCTGAACGGGAAAACGTCAAGGACGCCATCCTCAAGGCTGACTCGGATCTGTTATCCGAGAGACTGAACCGCACCCTCGTGAAGTGGCTGGTGGAATGGAATTTCCCGGGCGCTGTACCGCCCCGGGTTTACCGGGTATTCGACGATGAAGACCTGGATGCGCATGTGGCACGCGACAAGACGATCTCGGAGATGGGCTACAAACCCACCTTGAAATACATCACCGACAAATACGGTGGGGAGTGGGAAGAACGCCAGCAGGCCGAACCCCCCGCCGAAAA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCGCTGCCGCACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,7] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCGCTGCCGCACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [41.7-68.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //