Array 1 217729-216049 **** Predicted by CRISPRDetect 2.4 *** >NZ_MYOA01000002.1 Salmonella enterica strain BCW_4919 NODE_2_length_790077_cov_0.357108, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 217728 29 100.0 32 ............................. AGTTTATTACCCCGCCATTTTTCAGTCGTCGC 217667 29 100.0 32 ............................. CGGTACGACGTAAACTGCGCGCCCGGACTGAT 217606 29 100.0 32 ............................. GAGGCTATCGGGACACAGGCAAACGTCGTGGC 217545 29 100.0 32 ............................. TTTGGTTGATGCGTCAAACCTCGCTAACTTTG 217484 29 100.0 32 ............................. GCGGAATAATAAATGGAGTGCCATTTGTAGCA 217423 29 100.0 32 ............................. GAGCGATGTTGGCATGGCATTGGTTTACTGTA 217362 29 100.0 32 ............................. TAGAGCCGTGTGTTAGCAGATAATCAGTATTA 217301 29 100.0 32 ............................. AAGCCGGACCACATTTTTCTTGCCGAACTCAC 217240 29 100.0 32 ............................. GCTGTTGCCGACGTCGGGCTTAAACACCACTG 217179 29 100.0 32 ............................. GACGCTTCACCTGCATCAAATTCTCCTCCAGT 217118 29 100.0 32 ............................. GCGGGCAACAATTTTAGAGGGGCTGCATTCGC 217057 29 100.0 33 ............................. ACTACATAGATAACCAAAAATCCACTGGCAAGC 216995 29 100.0 33 ............................. CGCACGCGGGTTGCGTAACGGATATACGACAGC 216933 29 100.0 32 ............................. TCGCAGAACAGCTCTGCTTCCTTTGCGGAGAC 216872 29 100.0 32 ............................. TTGCGCTGTTCTATTGGCGGCAATTCTCTGAA 216811 29 100.0 32 ............................. GGACAGCACAGTTGATTACAGCAAAATTTACG 216750 29 96.6 32 ............T................ ACACGCCAGCCAACAATATTAATTTTGTCGTC 216689 29 100.0 32 ............................. CCTTGGCGGCAGCCACCTGAGCAACTGTCGGG 216628 29 100.0 32 ............................. CAGCTTCTTAACGAGGAGATTAACAGCGACGT 216567 29 100.0 32 ............................. ACTGTAGTTGCGGGTCAGGTTCCGGAATATCA 216506 29 100.0 33 ............................. GGATAGGGATCGGTAACTTTGCCATCGATCGGC 216444 29 100.0 32 ............................. AACGAATTGAGACTATTAGAGATTATTCGCCT 216383 29 100.0 32 ............................. GCAACCCATTAATTAACTAAGCAGTAATAAAC 216322 29 100.0 32 ............................. CACCCAGCGGGTAAACTGATCAGCAGCAGCAC 216261 29 100.0 32 ............................. AACCCTCAGAAAATAATCCAGACGTTACCGAA 216200 29 100.0 32 ............................. GCAGAAACAGAAACCGGATATGAGCCATCCAT 216139 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGGCAAGGGCTGAAAA 216078 29 93.1 0 A..............A............. | A [216051] ========== ====== ====== ====== ============================= ================================= ================== 28 29 99.6 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGTTGCCGCCAGCAATACCGGAATCTGAATCACTGGGTGATAGTGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTCGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTTAGATTAGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTAGGTAATAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : TTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCTCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGAAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCTCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCGT # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 235086-233899 **** Predicted by CRISPRDetect 2.4 *** >NZ_MYOA01000002.1 Salmonella enterica strain BCW_4919 NODE_2_length_790077_cov_0.357108, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 235085 29 100.0 32 ............................. AATACTATCCTGCAATGCGCTACCACGTTACT 235024 29 100.0 32 ............................. TGATAACGCATGGGAGTCCAGATTACAAATTC 234963 29 100.0 32 ............................. TGCTGGATACACGCGTTTCAATGGTCAGAGTT 234902 29 100.0 32 ............................. CAGCTCTCTAACGACTTCCCCGGAGTACGTAA 234841 29 100.0 32 ............................. CTTGTCGGCGTTGCTCACGTGACTATTTCGCA 234780 29 100.0 32 ............................. ACCGTTATCTGCTGGTTGATACTTCCCCGAGC 234719 29 100.0 32 ............................. CCGCAGAACGCCGCATCGCCGAACTGGACAAA 234658 29 100.0 32 ............................. TGCCGGTTTATCTGCTCCAGACCGATCGACTA 234597 29 100.0 32 ............................. TCCGCGGTGATAGTATGCGGGGAACTATAGAC 234536 29 100.0 32 ............................. GGAAACGAAGATGACCTTTATTAGAGATATCC 234475 29 100.0 32 ............................. TGCTGAATCTTTGCGAGTGGGATGATGGCACT 234414 29 96.6 32 .....T....................... CCGCTACGATCTATTCGAATCATAGTGGTGCG 234353 29 100.0 32 ............................. GCGTGCGCCGGGATATTGCGCCGCGCCGAGAA 234292 29 100.0 32 ............................. TCCTTTTATTCTAATGGGTTAGATAGGGTAGA 234231 29 100.0 32 ............................. AAAACTGCACCGCCGCTGCCACTGAGTTTGCT 234170 29 100.0 32 ............................. AAAACTGCACCGCCGCTGCCACTGAGTTTGCT 234109 29 100.0 32 ............................. GCGCAGAATTTACAGGTGTCACTGTTGTCCGG 234048 29 100.0 32 ............................. GGCGTGGTGTATATCGGTCTTGATGCGTTGTC 233987 29 100.0 32 ............................. GTCACGAGGTCTGACGCGGATGTGATGAGTTA 233926 28 82.8 0 ...............A.AA.....G-... | ========== ====== ====== ====== ============================= ================================ ================== 20 29 99.0 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTGAAATGTGGTGCTGATAAAAAGTAGTTTATAAACAATGACATACGTTTAGT # Right flank : TTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGTCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGAAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGGCCCCCTGCCGATTGG # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //