Array 1 405-65 **** Predicted by CRISPRDetect 2.4 *** >NZ_KV790971.1 Streptococcus sp. HMSC10A01 Scaffold239, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ==================================== ================== 404 32 100.0 36 ................................ AAGTGAAGAAAGTTTCGAAGTTGTCGGAAACCTATA 336 32 100.0 35 ................................ ATATGCTGGGGGTATCTGGCAGACAGGTGAATACG 269 32 87.5 9 ............................NNNN NNNNNNNNN Deletion [229] 228 32 78.1 34 NNNNNNN......................... ACTTGCTAGTCACCATATTTTCCAAGGCGAAAAT 162 32 100.0 34 ................................ GTATTGATTCAATGCATCTAACAATGCATCTAAC 96 32 100.0 0 ................................ | ========== ====== ====== ====== ================================ ==================================== ================== 6 32 94.3 30 GTCGCTCCCTTCACGGGAGCGTGGATTGAAAT # Left flank : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCCCTTCACGGGAGCGTGGATTGAAATTTCGTTTTCCTCCGTTTGTTTGTTACTGGTTTGAGTCGCTCCCTTCACGGGAGCGTGGATTGNNNNNNNNNNNNNNNNNNNNTCCCTTCACGGGAGCGTGGATTGAAATCTGTTCCTCTCAAATAATCTGGAATTTCATCCCCTA # Right flank : TAACCTCTAAATTAGCTTGGCTTAGGTTTCCTCCGAAGTCGCTCCCTTCACGGGAGCGTGGATTG # Questionable array : NO Score: 8.29 # Score Detail : 1:0, 2:3, 3:3, 4:0.71, 5:0, 6:0.25, 7:-0.47, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCTCCCTTCACGGGAGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCTCCCTTCACGGGAGCGTGGATTGAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-5.80,-6.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [46.7-56.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.78,9.64 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 2 2851-2661 **** Predicted by CRISPRDetect 2.4 *** >NZ_KV790971.1 Streptococcus sp. HMSC10A01 Scaffold239, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ =================================== ================== 2850 27 84.4 34 -----........................... AAAATCTCATTTGTATCAATCGCCGTCATTTACT 2789 32 100.0 0 ................................ - Deletion [2758] 2757 30 87.5 35 --GT............................ AAAAATAGCTCAGATGTGGTTGGTTGGAGCGGTCG 2692 32 87.5 0 ............................NNNN | ========== ====== ====== ====== ================================ =================================== ================== 4 32 89.8 23 GTCGCTCCCTTCACGGGAGCGTGGATTGAAAT # Left flank : | # Right flank : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN # Questionable array : NO Score: 6.80 # Score Detail : 1:0, 2:3, 3:3, 4:0.49, 5:0, 6:0.25, 7:-1.34, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCTCCCTTCACGGGAGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,3] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCTCCCTTCACGGGAGCGTGGATTGAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-2.90,-3.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [0.0-0.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,4.87 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 131384-132385 **** Predicted by CRISPRDetect 2.4 *** >NZ_KV790965.1 Streptococcus sp. HMSC10A01 Scaffold151, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ =================================== ================== 131384 32 100.0 35 ................................ AAGACTCCAAAAGTGATTTGTCCTGGTGCGATGTT 131451 32 100.0 35 ................................ AATGGTCTTTGGAGTGGTATTTCTGATGGAGCTTC 131518 32 100.0 33 ................................ AAGTTTTTTCAAGTTCTGCCCAGCTATGCGCCC 131583 32 100.0 34 ................................ AATATCACGGGCGAAACTTTAATGGACAATGCGT 131649 32 87.5 11 ............................NNNN NNNNNNNNNNN Deletion [131692] 131692 32 84.4 35 NNNNN........................... AAATAGCCCGTGGTGAAGTCGGCTATGATGAGGAA 131759 32 100.0 35 ................................ AAGAAAGAGAAAAGGCACCATCAACTCTACATCAG 131826 32 100.0 34 ................................ AATAAAACGTGTCTGAGGGAGAAAATGGACTCAG 131892 32 100.0 34 ................................ AATAATATAAAGACTGGGTTTAATCTTAGATTCA 131958 32 100.0 34 ................................ AATAAACACTTGGACGATTGAGCCTTTTTTAACC 132024 32 100.0 35 ................................ AATAATTACGTCGGCAACCATTTCAACAAATAATT 132091 32 100.0 34 ................................ AAGCGTGGTGTTGTATTCGACGATTTTGCCTTTT 132157 32 100.0 33 ................................ AAGCTTGTTCTAGCGTTGAGAAAGAGCCGATAA 132222 32 100.0 34 ................................ AAAACACAGGACTTACCAACACAAATTGGGAATA 132288 32 100.0 34 ................................ AAAGGTTTAAATGGGGAAAGCGTTTTTCTCAAAA 132354 32 100.0 0 ................................ | ========== ====== ====== ====== ================================ =================================== ================== 16 32 98.2 33 GTCGCTCCCTTCACGGGAGCGTGGATTGAAAT # Left flank : AAGAAAAGATTACGTCATGTGGCAAAATTATGCGTTGATTATGGGCAACGCGTTCAGAATTCAGTTTTTGAATGCTCAGTAACTCCTGCAGAATTTGTAGAAATAAAAGCTAAGCTTTTGAGTATAATTGACACTGAGTCAGACAGTATTCGTTTTTATTTGCTAGGAAAAAACTGGCAAAATCGTTTAGAAACAATTGGACGAGATACAAGTTATGATCCTGATATAGGCGTACTACTCCTTTAAATTACTTAGTGCGAATAGTGGTTACTCATAAAAAAGTAGGGCATTCGCGCGAAAAACAAACAAAAATAAGGTGAAAATTCAAAAATAATGGAGGAGTTATCTCTCCTTGAAAAATAATTTTCACCTAAAACAGTGCAACTACGCGCTGTCGCTCCCTTCACGGGAGCGTGGATTNNNNNNNNNNNNNNNNNNNNCCCTTCACGGGAGCGTGGATTGAAATTCCAATTCTGAACTGTTTGTGTTATTTACGTTAA # Right flank : TAACGAAGGCACGAACGACCGCTTATGGCAACCAGTCGCTCCCTTCACGGGAGCGTGGATTGNNNNNNNNNNNNNNNNNNNNTCCCTTCACGGGAGCGTGGATTGAAATTCTATTTTTTTTGAAATATTGCTCTGTCAAGGATTCGTCGCTCCCTTCACGGGAGCGTGGATNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN # Questionable array : NO Score: 9.05 # Score Detail : 1:0, 2:3, 3:3, 4:0.91, 5:0, 6:0.25, 7:-0.11, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCTCCCTTCACGGGAGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [8,8] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGCTCCCTTCACGGGAGCGTGGATTGAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-6.70,-5.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [60.0-38.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.64,0.41 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 2 133616-134514 **** Predicted by CRISPRDetect 2.4 *** >NZ_KV790965.1 Streptococcus sp. HMSC10A01 Scaffold151, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ============================================================================= ================== 133616 32 100.0 34 ................................ AAATTGATTCAATGCATCTAACAATGCATCTAAC 133682 32 100.0 65 ................................ AAATTGATTCAATGCATCTAACAATGCATCTATCAAGAAGCAACAGCACCACAACAATCAAGCAC 133779 32 100.0 34 ................................ ATAATGTTTACCAGAGATCTTGCTGTCTTGATAT 133845 32 100.0 34 ................................ AAATTGATTCAATGCATCTAACAATGCATCTAAC 133911 32 100.0 34 ................................ AAGGTCGGACGGATAACCCAGCTATTGCTGGAGA 133977 32 100.0 34 ................................ AAATTGATTCAATGCATCTAACAATGCATCTAAC 134043 32 100.0 35 ................................ AAGCAATACGAAATTTCAAAAGCAACTGGAGTGGC 134110 32 90.6 77 .............................NNN NNNNNNNNNNNNNNNNNCCCTTCACGGGAGCGTGGATTGAAATTTATTTTTAATTTACGACGCTTTTTTACGGGAAT 134219 32 100.0 35 ................................ AATTTTGTGGTATAACCTGACTTATATCAAAAACC 134286 32 100.0 34 ................................ AAGACTGAGCTAACGCTGAACGCTGAAAAAGAAG 134352 32 100.0 34 ................................ AATAATGGATAGCGCTTTGCTTGCGCATTGGGCT 134418 32 100.0 33 ................................ AACATATCCTTCGTGTCTTGTCGCCACTTTATC 134483 32 87.5 0 ............................NNNN | ========== ====== ====== ====== ================================ ============================================================================= ================== 13 32 98.3 40 GTCGCTCCCTTCACGGGAGCGTGGATTGAAAT # Left flank : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCCTTCACGGGAGCGTGGATTGAAATCCTTGGACGATGCCTAAAGAGTAGAAAGGGGTGCT # Right flank : NNNNNNNNNNNNNNNNNCCCTTCACGGGAGCGTGGATTGAAATTTATATAGATTGTCGTTCTATTTTAAACGGAAAGTCGCTCCCTTCACGGGAGCGTGGATTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN # Questionable array : NO Score: 8.75 # Score Detail : 1:0, 2:3, 3:3, 4:0.91, 5:0, 6:0.25, 7:-0.41, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCTCCCTTCACGGGAGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: R [7,8] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGCTCCCTTCACGGGAGCGTGGATTGAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-6.40,-5.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-9] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [48.3-43.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.78,0.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 3 135676-135837 **** Predicted by CRISPRDetect 2.4 *** >NZ_KV790965.1 Streptococcus sp. HMSC10A01 Scaffold151, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ =================================== ================== 135676 32 100.0 35 ................................ AATTGATTCTTCTTTTCGTTGGCTAACAATATCTT 135743 32 90.6 27 ........................G..TG... GGTGATTGAGAGGTGCGAACATCATGT AAAT [135768] 135806 32 100.0 0 ................................ | ========== ====== ====== ====== ================================ =================================== ================== 3 32 96.9 32 GTCGCTCCCTTCACGGGAGCGTGGATTGAAAT # Left flank : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCCTTCACGGGAGCGTGGATTGAAATTTCTGCCATAGTAGGCCTCCTGCATTTGATATTC # Right flank : TAAAATGATTGATCGTGTAACTCGTCTATGCTATAAGGTAGCTTCCTTCATTTTGAAAATTTTCATGAACCCAAGATACTTATTTATTATTTATATAATATATTTAGTTGTTCTCTTTCATATCTATCCAAAAAAAACCACCTATTAGGTGGTTTTTTTCAGTATCTATCACTGCTTACTAGAAGAACTTGAGCTGCTTGAGCTGTCGCTGCTGGATTCAGAACTGTCTTCTGAGGAGCTGGTGCTTTCAAATTGTTCTGGGTGGAGCGCTCGATAGCTTGGAGCATCAAAGAGGTCAATGGTCGATTCGCCCTTACGTTGGCTATAGAGACTGGTTGATTGGTCTCCTTTTTCTTCCTCGATTTTCTTCAATGCTTTGAAAGAGTGGTTGTAAGAGTATTTCTTGACATCTACCTTGCCCAAGTCATTACCCTCGTAGAAGCGAATCAAGTCACCGGTTTGAATAGCGTCACTAATCTTCAGCTGAGTATTGGCAGCAT # Questionable array : NO Score: 8.10 # Score Detail : 1:0, 2:3, 3:3, 4:0.85, 5:0, 6:0.25, 7:-0.09, 8:0.4, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCTCCCTTCACGGGAGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,7] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGCTCCCTTCACGGGAGCGTGGATTGAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-6.30,-5.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [51.7-68.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.64 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //