Array 1 33-1219 **** Predicted by CRISPRDetect 2.4 *** >NZ_SRIO01000064.1 Candidatus Macondimonas diazotrophica strain KTK01 NODE_64_length_1278_cov_5.45217, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ===================================== ================== 33 37 100.0 35 ..................................... ACCGGCTCGAGCGGCGTCACGCAGGCGATGATCGC 105 37 100.0 35 ..................................... TACCAACTCTCCGCCGCCTGGATCCCCGGAACGGT 177 37 100.0 36 ..................................... ATGATGTACCTGGCTACATAGGCCGCACTCTCAAAC 250 37 100.0 35 ..................................... GTCGGGGAGCGGCTCGGCATCCCGCGACATACCGC 322 37 100.0 34 ..................................... AACAGCGGTGATCTGAGCACCCTTTCGAGCAATT 393 37 100.0 34 ..................................... CCGACGCCGTTGGCGATTTGCTCGAAGGGATTGC 464 37 100.0 34 ..................................... GGTCGTTTGCCATGCATATTGCGGATGGTGCGGC 535 37 100.0 37 ..................................... GGTGCTGGTAAGTACCGCATCACTCGCGATGGCGAGA 609 37 100.0 34 ..................................... GCGCGATTGATTGCGCAGTCGCGTCGTCTCGGCA 680 37 100.0 36 ..................................... GGCTCCGTAGCTGGGGGGTTTACCCCAAGAATCCGG 753 37 100.0 34 ..................................... TATCAACGCCATTTTTCAGCAGCTGTCCAGCCGT 824 37 100.0 34 ..................................... CACATCCCCTGGTGGATGGGGCCGTACATCATCT 895 37 100.0 35 ..................................... ATCCGAGCCACCGAGACTGGGTTATGGCGCACCGG 967 37 100.0 35 ..................................... GCCATTACATAGGCGCAATTGCATGGATCAAGACC 1039 37 100.0 35 ..................................... CACCAGATCAGCCGTCCACGTTGTCGGGCCAGATT 1111 37 100.0 35 ..................................... ATCGCCTCATCATCTTGGGTGCGGTTGTCGGAAGC 1183 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ===================================== ================== 17 37 100.0 35 GTATCTCCCGGCTAATAAGCCGGGAGCGGATTGAAAC # Left flank : GGACCGTCCGGCCGACTACCGGCTGAACCACCG # Right flank : TATGCACGCCGGGCGGCATCACCGGCCACGTTCTTGTATCTCCCGGCTAATAAGCCGGG # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTATCTCCCGGCTAATAAGCCGGGAGCGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: F [10,7] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-15.40,-15.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [15.0-36.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,0.64 Confidence: HIGH] # Array family : NA // Array 1 1112-67 **** Predicted by CRISPRDetect 2.4 *** >NZ_SRIO01000066.1 Candidatus Macondimonas diazotrophica strain KTK01 NODE_66_length_1129_cov_6.65922, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ===================================== ================== 1111 37 100.0 34 ..................................... ATGAACACCGGCTACAACGTGTTCACGCTGCAAC 1040 37 100.0 35 ..................................... TGACGGTCGCCTCGATTGACCTCCTGGCCATGCCA 968 37 100.0 36 ..................................... TTCGATCCCGGGGGGCACTTTCGTCGTCATGGAAAC 895 37 100.0 36 ..................................... GACTTCTATTGGCCGGCGCTCTCTCACATTGGCGAA 822 37 100.0 34 ..................................... CATTGGATTGTGGGCAACAGACTCCCAGGTAACT 751 37 100.0 34 ..................................... TGATGCCCAACGATATGGCGGTGACTCCTGGCCT 680 37 100.0 35 ..................................... CGCTCAACGGGCTGGCGATGCAGGTTGCCATTAAC 608 37 100.0 35 ..................................... GCCATCTGGCGCCAGCTCCACGCGCGGGATATACA 536 37 100.0 34 ..................................... AGGTCTCGCCGGGCGGATCCAAGCATCCGGGCGG 465 37 100.0 35 ..................................... GGTCGTTGATGGTGAGACCGGCGAGGTTCTCGGCC 393 37 100.0 37 ..................................... CAGATTCCGACAGGACCACGCCAACAGGAGTCAGAAG 319 37 100.0 35 ..................................... CGCTGGTGAAGGGAAGCTTCGTGAACACATCTAAT 247 37 100.0 34 ..................................... GCGGCTCTCTGCGCCTCTCAGCAGGAGGTCACAG 176 37 100.0 36 ..................................... AAATCGTCAAGCCCTCACACGCTGATCAATGCCGAC 103 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ===================================== ================== 15 37 100.0 35 GTATCTCCCGGCTAATAAGCCGGGAGCGGATTGAAAC # Left flank : ACGTGTTCACGCTGCAA # Right flank : CGCGCTGCAGGTGGCCACGCTGGCGGTGTGCCAGGGTATCTCCCGGCTAATAAGCCGGGAGCGGATT # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTATCTCCCGGCTAATAAGCCGGGAGCGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: R [7,10] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-15.70,-15.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [31.7-13.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.64,4.87 Confidence: HIGH] # Array family : NA // Array 1 842-15 **** Predicted by CRISPRDetect 2.4 *** >NZ_SRIO01000073.1 Candidatus Macondimonas diazotrophica strain KTK01 NODE_73_length_875_cov_5.3378, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ==================================== ================== 841 37 100.0 36 ..................................... GAAATCACGATCCTTGTGCGGCTCCAGTGCCGCCGG 768 37 100.0 36 ..................................... TTTGGCGGGAGATCGCGGCAAAGAGCGTTGCCGACC 695 37 100.0 34 ..................................... ACATTACGGCCCATCGTAGCGCACGGCAAATCCG 624 37 100.0 34 ..................................... GTCTGTATTGCCAAGCCACCATGGCCGCGTCCCG 553 37 100.0 34 ..................................... CTGTCGTCATCGGCGAGGTTGGCGTATACGATGC 482 37 100.0 35 ..................................... TTAGAAACTCGCTCTATCCTGGCGTGAACGACGAC 410 37 100.0 34 ..................................... TGGAACTGGCAGATCAACGGCCTGATCGGCTACG 339 37 100.0 34 ..................................... GTCAATTGCTATCTCCGCGCCGCGGTCGATTCGC 268 37 100.0 35 ..................................... TGAGATTGCCTCGCAATTCGTCGCTTTCGCCCCGG 196 37 100.0 36 ..................................... ACGACGGACTCCGCGGGGATCCATGCCGGATTTGCC 123 37 100.0 35 ..................................... AGAGCGCGTGCCACGGCTGTTATCGACTCAATTAA 51 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ==================================== ================== 12 37 100.0 35 GTATCTCCCGGCTAATAAGCCGGGAGCGGATTGAAAC # Left flank : GGAGATACCCGGCGGCATCACCGGCCACGTTCT # Right flank : CATGCAAACCTTGCT # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTATCTCCCGGCTAATAAGCCGGGAGCGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: R [7,10] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-15.70,-15.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [13.3-20.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,4.87 Confidence: HIGH] # Array family : NA // Array 1 399-4 **** Predicted by CRISPRDetect 2.4 *** >NZ_SRIO01000084.1 Candidatus Macondimonas diazotrophica strain KTK01 NODE_84_length_412_cov_6.55742, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ==================================== ================== 398 37 97.3 34 ...............T..................... GCCATACTCGCCACAATGGAAGTATTTGATCTTT 327 37 97.3 36 ...............T..................... TGGGGCGGACGTACCGCAACAACAGTCCGGCAGAGT 254 37 100.0 34 ..................................... ACCGCAGCACTTGCAGCGCGCAAACGCAGGCACT 183 37 100.0 35 ..................................... TGGTGCACATCGTCGGCACCGCCCGTGCGAAGGAT 111 37 100.0 34 ..................................... TCGGCAGCTCGTTTATCGAGATGCTCCGCGCGCG 40 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ==================================== ================== 6 37 99.1 35 GTATCTCCCGGCTAAAAAGCCGGGAGCGGATTGAAAC # Left flank : GGCGGTGTGCCAG # Right flank : CCGT # Questionable array : NO Score: 9.21 # Score Detail : 1:0, 2:3, 3:3, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTATCTCCCGGCTAAAAAGCCGGGAGCGGATTGAAAC # Alternate repeat : GTATCTCCCGGCTAATAAGCCGGGAGCGGATTGAAAC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: R [6,11] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-15.70,-15.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [1.7-5.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,4.87 Confidence: HIGH] # Array family : NA // Array 1 16-342 **** Predicted by CRISPRDetect 2.4 *** >NZ_SRIO01000085.1 Candidatus Macondimonas diazotrophica strain KTK01 NODE_85_length_364_cov_2.87055, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ===================================== ================== 16 37 97.3 34 ...............A..................... ATTGGCCGTTATTCGATAATCCATCATTCACAGC 87 37 100.0 35 ..................................... TGAATCTCAGCCGAGATCTTGCCAACTTCCATGCG 159 37 100.0 36 ..................................... CGGCGCGGTATCCGCTACTGTCCGGAGAGCCCGATC 232 37 100.0 37 ..................................... GAGCGCGTGGCCGAGATTTTCCGCACTGCTCCTGCTG 306 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ===================================== ================== 5 37 99.5 36 GTATCTCCCGGCTAATAAGCCGGGAGCGGATTGAAAC # Left flank : CCCCACGCGTGCGGCG # Right flank : ACGGCCGGCGCGATATCGCGAT # Questionable array : NO Score: 9.03 # Score Detail : 1:0, 2:3, 3:3, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTATCTCCCGGCTAATAAGCCGGGAGCGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: F [10,7] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-15.40,-15.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [3.3-11.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,0.78 Confidence: HIGH] # Array family : NA //