Array 1 2451-648 **** Predicted by CRISPRDetect 2.4 *** >NZ_RSCO01000033.1 Bifidobacterium animalis subsp. lactis strain 2011B Contig_33, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 2450 29 100.0 32 ............................. GAATTGGCTACCAGACCTGTCTGCGAGAGCGC 2389 29 100.0 32 ............................. GTGGACAGGTCGATCTGCCGGTTCAGTTCCTC 2328 29 100.0 33 ............................. CGGGCGAAATACGGGCATGGGTCCACATGATCA 2266 29 100.0 33 ............................. CGGGCGAAATACGGGCATGGGTCCACATGATCA 2204 29 100.0 32 ............................. TCAGGCCGAATCCTGCTCTATTGGGACGACGA 2143 29 100.0 32 ............................. GCTCTGATGTTTCGGAACGTTGGCACGAAACT 2082 29 96.6 33 ............................T GTGGACAGGCGCACCGACGGGCATGTGGACGAG 2020 29 100.0 32 ............................. ACAATCAATGACGCGGCGAGCGTCTCTCATGT 1959 29 100.0 32 ............................. TCATTGCGCTGTTCGGCCACGGGTCAGTCAGC 1898 29 100.0 32 ............................. GCGTTACGCATGACCCTCTTGGCCACACGTTC 1837 29 100.0 32 ............................. GCGTATCAGGCGTATATCAGGCCCCATAGGCA 1776 29 100.0 32 ............................. CGGTCGTAATCGACGCACTGGATTGCCTCACG 1715 29 100.0 32 ............................. ACGTCTGTAGCGTCCATACGCTCGCGCACGTC 1654 29 100.0 33 ............................. AAGTGCAACAAACGACGCCGGCATGTCGCGCGT 1592 29 100.0 32 ............................. AATACAGCAGAACAGCACAGGCAACGCACAGG 1531 29 100.0 32 ............................. ACGTCACTACCGCCAAGGCCGTCGGCACATAC 1470 29 100.0 32 ............................. TGTCCGGCGATCGCCGCCGGCACACGGTAATA 1409 29 100.0 32 ............................. GCCAGCACGTTCTTCCCGTTCTCGTCACTGAT 1348 29 96.6 32 G............................ TGTTGGGCGTCGTCAACGTTCGACATGCTCGG 1287 29 96.6 32 G............................ GCTGGGTGACGAGCGACGTGCTGCCGTCCATC 1226 29 96.6 32 G............................ TCAGCTCCGAAATCAACCTCATGCTACGCAAA 1165 29 96.6 32 G............................ AGGAGCGTGACCGTGTACTTGCCGTCATCACC 1104 29 89.7 32 G.......T.................T.. TACACCGAGATAACGCAGGCCGCCGGCAATTT 1043 29 89.7 32 G..........G....T............ CCGGCCGCCCCGGAGGTGGCGCGGAAGATACG 982 29 89.7 32 G.....T.........T............ ACGGCCGACAAGATCAGCGGACGACCCGTGAC 921 29 89.7 32 G.............TA............. GCCTACGGCATCCCACCCGAACTACTCGGCAT 860 29 93.1 32 G...............T............ GATGCGCAGTTGCAGGCGCTCGTGGCGTCAGC 799 29 86.2 32 G......T..T...............T.. GACAACAACGCCTGCAAGAGGCCGGACTGAAT 738 29 93.1 32 .......A......T.............. CAGGCCGGGTGCCTCCATCCACTGCAAAACGG G [730] 676 29 86.2 0 G.......T...G.............T.. | ========== ====== ====== ====== ============================= ================================= ================== 30 29 96.7 32 ATGTTCCCCGCAAGCGCGGGGATGATCCC # Left flank : GATAGGATCAAACCAACATCGAAAAGAAGGGAACTCTCATGCGTGGACGCATACTAAAAACCATCACAGCCATCACGTTGGCCGGTATCATGCTGGCCTCCGGCAGCGGGTGCGGTTCGAATCAACCCACTACCACTGCGTCACCGACGCCAACCGTGGATGTCATCAAGAAGATCGAGACTGATTGCGGCGTCCAGTCCGAACGCGGCAAAGAGCTCGTCTATCGATGGTGGAGCAATGAAGGTGAGAAGAACACCGCCCAATGCCTGCTCAACCACATGCCGCAAGACGTGTACGACCAATACGCACAAGGAGTTGGGGACGCGAGCGAGAAGTACATGGACGGCGGTAGCGCTACATATAGCGACTACACGAGCGAGGAAGGCTACCGCTACGAATGGACTGTGCACTACATAGGCGGCGGCACTGCGTTCAAGACATTCTCTATTCTCACCGTCACGAGAATCTAGTCGCATGTCATGCCGCGAAAACGCGAATGA # Right flank : TGACTAGTGTATTTTGTCAAATCGGCGTTTTGGCTTGGGTGCCGGACTGCGTTGCCGCTGTCTCGATTATGTTGATTATGCCATGAGTATGTTGATTATGCCATGAGGTCTCTAGTTCTTACTGGTGTCGGCGCATGTTTGTGCCATTCGGTCTTGACGCATTCATTCCAGTATCCGGCCAGATAGTCGTTGAGGTCGTTGATGAACTCGTCGATGCTGTCGTCTTGGTGGTTCCGGTTGTGGTAGGAGAGGGATGAATTTTGTAGGACGAGTATCAGGGTATTGCTCCGATTTTGGGGATTGAAACATCCAAGGTGATGCCGAGGTAGTGGCTAGATGTAATTCCAATTATCCATCTGTTGTTAGGTCTAACGATGGGGAGAATAGGAGCGACCATTGTTTGTATTACTACAATGATTTGGGTCCACAAGGAATACAGAGATGGCTTTATCTCAGGAAGCATTGTGAGCAGGGTATGAATGCTCTGTACTATCTAGCCT # Questionable array : NO Score: 6.02 # Score Detail : 1:0, 2:3, 3:0, 4:0.84, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.92, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATGTTCCCCGCAAGCGCGGGGATGATCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCAAGCGCGGGGATGATCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-9.00,-9.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [18-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [46.7-51.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.28 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 4873-2953 **** Predicted by CRISPRDetect 2.4 *** >NZ_RSCO01000033.1 Bifidobacterium animalis subsp. lactis strain 2011B Contig_33, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 4872 29 100.0 32 ............................. ATCATGGATGCACTCATCATCATTCTTGCAAT 4811 29 100.0 32 ............................. GGGCGCCTGCGATGGCGACACACAGGCGACCC 4750 29 96.6 32 ............................T ACACGCCAGGCTGCTCAGGACACCTCGACATG 4689 29 100.0 32 ............................. TCGTCCAGTCGAATGCTCGACGGCAAACGTTC 4628 29 100.0 32 ............................. GGTTCCTTGTTCGGCGGGTTGGATGATTTCCC 4567 29 100.0 32 ............................. AGGATAATCTGGGATTCGAACATGAGTGGGTT 4506 29 100.0 32 ............................. TCGTCACCGACGCGCTCAACGGCCTCGCCTAC 4445 29 100.0 32 ............................. GGTTTGTCGGGTCATGCTGCCTCCTCATCCAT 4384 29 100.0 32 ............................. GCGGCGACCTGCGATTGGAAAATCGTCGGCAA 4323 29 100.0 32 ............................. ACGTCCTGAGCGTCGGTATTTGACTCCACGGC 4262 29 100.0 32 ............................. TCGCCGCCACACTGGCGGCAGGTGCGGTAGCG 4201 29 100.0 32 ............................. ACGGGCAACAACGCAATCCAACCAGCCACCGA 4140 29 100.0 32 ............................. GACGCGTCCATTGGATCCCATGGATTCGTCAA 4079 29 100.0 32 ............................. CGGTATCAGGTGACGGTGATGAGCATGCTCGC 4018 29 100.0 32 ............................. AAGCGCACGCCGACGCTCCGGCATGATGCGCG 3957 29 100.0 32 ............................. TCATCGAGGCCGGACTGCTGCCAGCGCCGAGC 3896 29 100.0 32 ............................. AGCGGCAGGATCCTCCTCTATTGGGACGACGA 3835 29 100.0 32 ............................. ACGGCGGTGCTCACCTGATCGCTCGTGAACGG 3774 29 100.0 32 ............................. GCGGTGTGGTTCAGGATCGGGTTCTTGTATGG 3713 29 100.0 32 ............................. GGAAGCTCACCATCATCAACAGCGGCATGCAC 3652 29 100.0 32 ............................. AGCGTGAGCGAGAGGATTCCGCACAGCGTCCA 3591 29 96.6 32 ............................A CCCTGTCCCGCTGTTTTTCCTTTGTTTGCGTG 3530 29 100.0 32 ............................. GGCATGTGCGATTGGCGTACCGACGGGCGCAT 3469 29 100.0 32 ............................. AGATTGCAAGGCAGCACATGGGCGATAATCCG 3408 29 100.0 32 ............................. AGCGTGAGCGAGAGGATTCCGCACAGTGTCCA 3347 29 100.0 32 ............................. GCGGTACGCAACCGGGCAGGCCGCCAGGTGTT 3286 29 100.0 32 ............................. TCCGGCTGTTGTTGACTGACGCCCAGTTCGAC 3225 29 100.0 32 ............................. TCGGCGGGCAGATTTCATACAACCGCGTCAGG 3164 29 100.0 32 ............................. TGGCCGTTCACACCAGCCCTGCCGCGCACGGT 3103 29 100.0 32 ............................. TGTCAGCCGAAAGGTTCTGCAATATGACCGTT 3042 29 100.0 32 ............................. GGGACGCCGAGCAGTTGCGAGATCTCCTCGTC 2981 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 32 29 99.8 32 ATGTTCCCCGCAAGCGCGGGGATGATCCC # Left flank : AAGCACCCGTGCGGGTGCTTCATATCGTGGACTGCACCGGAATCGAACCGATGTGGCAGACCTTCCAGTCCTGGTATGCAAAAGGCCTCCAAGAATGGAGGCCTTTTGCGTTGATTCACTGATTCGCGAGTGGATACTCTTCCTTTGATCTCCCGTAGAAGATGCACCAGCAGAGCCATCGGTACAGCTCTTCATCAGAGACATCGATAGAGATGTCCTCGATATTGAGAAACGGTTCATGAAACTTGCTGTGGTATACTATCGACGCGTTTCCGATGGCATTTTGCAACGTATTCCCGTCAAGGCCATCGGCGAGAAACCGTTCAAAACTATCAGTGCGAGCAGCGTTTTTCATGCCAGCATCTCCTTCACCATGGTATTGAATATTGTAACCGATTGCGGGAAATACTGCTCTATCAGCTCATAAGCCTTTGGGTTCGCGAGCTGGGCGTCCATGATTTCCGCCCATGGCTCGGCGCAGGCGTGCATGAAATCGGAAA # Right flank : ACGATAGGATCAAACCAACATCGAAAAGAAGGGAACTCTCATGCGTGGACGCATACTAAAAACCATCACAGCCATCACGTTGGCCGGTATCATGCTGGCCTCCGGCAGCGGGTGCGGTTCGAATCAACCCACTACCACTGCGTCACCGACGCCAACCGTGGATGTCATCAAGAAGATCGAGACTGATTGCGGCGTCCAGTCCGAACGCGGCAAAGAGCTCGTCTATCGATGGTGGAGCAATGAAGGTGAGAAGAACACCGCCCAATGCCTGCTCAACCACATGCCGCAAGACGTGTACGACCAATACGCACAAGGAGTTGGGGACGCGAGCGAGAAGTACATGGACGGCGGTAGCGCTACATATAGCGACTACACGAGCGAGGAAGGCTACCGCTACGAATGGACTGTGCACTACATAGGCGGCGGCACTGCGTTCAAGACATTCTCTATTCTCACCGTCACGAGAATCTAGTCGCATGTCATGCCGCGAAAACGCGAAT # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATGTTCCCCGCAAGCGCGGGGATGATCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [5,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCAAGCGCGGGGATGATCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [1-1] Score: 0/0.41 # AT richness analysis in flanks prediction: F [56.7-38.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,4.87 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 3 8713-5754 **** Predicted by CRISPRDetect 2.4 *** >NZ_RSCO01000033.1 Bifidobacterium animalis subsp. lactis strain 2011B Contig_33, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 8712 29 100.0 32 ............................. TCGCCACAGTCTTTGGCGTTTACCCGCACGAA 8651 29 100.0 32 ............................. GTCAAACCACAGGGCAAAACCGGCAGCCTGGT 8590 29 100.0 32 ............................. ACGAACAACTCACTCATGGCGGGTATGGCGTG 8529 29 100.0 32 ............................. TCAGCACTCTCATCAGGCGAGCCGAGAAGGCC 8468 29 100.0 32 ............................. TGGCCGGCGAATTCGGCCATGCCAACGAAATT 8407 29 100.0 32 ............................. GGCGCCCGGTCGCGGTTCCACGGGTAGAGCGT 8346 29 100.0 32 ............................. TGGTGATAGCCCGTTTGTGCGACCAGATCAGC 8285 29 100.0 32 ............................. AGCACACAGCCAGTCGAGGATTTCCTCGCCAA 8224 29 100.0 32 ............................. ATCTGGCTGTCGCCGTATCCGGCGGGCAAGAA 8163 29 100.0 32 ............................. AGTCGAAAAACGCGCTGATCCCCGACGAGATC 8102 29 100.0 33 ............................. ACGATGGTCGCCGTGTTCTCCTCCGTCCAGCTC 8040 29 100.0 32 ............................. AGTGGCGGCGGGCGAACCCGAGCTACCCGCTG 7979 29 100.0 32 ............................. TCTGGGTAGCGTGCTTGGAACTGGTCGCGGAT 7918 29 100.0 33 ............................. AACAGGGTGCCGAGACCAGCCTGCCACCGGTCG 7856 29 100.0 32 ............................. TCGACGTGTATCGGCATCGAGATCTGCGAGGC 7795 29 100.0 32 ............................. TGTTTCCAATTCCTGGCGACCTTGCGCGCATC 7734 29 100.0 32 ............................. GGGACCACGGCGACGCGATCGAGCCGGTTATC 7673 29 100.0 32 ............................. AGGCTCAAGAGCAACCGCAGCGACGACTACGC 7612 29 100.0 32 ............................. GCGCCGGATACTGGTACGACGTGATGACCGGG 7551 29 100.0 32 ............................. CGAACATCTGCTGGTACGAATAGGGCACAGCA 7490 29 100.0 32 ............................. TCAGACAGTCTCACTGGACCTTTTGAGCCATT 7429 29 100.0 32 ............................. TGGGTGATGGTCTGCTCGGTGTCGAGCATGGC 7368 29 96.6 32 ............................A ATTCGAGGCCGCCTACCCGGTCTCCGACAATC 7307 29 100.0 32 ............................. ACCGTCTCTACCGGCGTGACACAGACATGGAA 7246 29 100.0 32 ............................. ACCATCACGCAATGGGGCAAACGGGGACTCGT 7185 29 100.0 32 ............................. GGTGACCGCTACTGCAGTGAGCACAAGCGCGC 7124 29 100.0 32 ............................. AGACACTCGCAGCGTTGGGAATCACCCGACCA 7063 29 100.0 32 ............................. TATGAAAGCGAACCATAATGGCCATTACACCA 7002 29 100.0 32 ............................. ATCAACAGCATCGCCAACCCGCTCAAGGACAA 6941 29 100.0 32 ............................. CGTCGCCAATGGAGGACATACATCGACCTCAC 6880 29 100.0 32 ............................. TGCACAACGAAACCAACACCGAACTGGTACTG 6819 29 100.0 32 ............................. TCAGACAGTCTCACTGGACCTTTTGAGCCATT 6758 29 100.0 32 ............................. GCAAGCCATCGTGGCTCAGGCTCATGGCTCCG 6697 29 100.0 32 ............................. ACGCCAAGGCTGAGGTGCTCATCGGAGATGCG 6636 29 100.0 32 ............................. GCGTGGTCGATGGCGCGTTTGACTGTCTGCCG 6575 29 100.0 32 ............................. TATGGCTTTGGAGAACCTGCCCGTGCTCCGGT 6514 29 96.6 32 ............................A TCCGCGAACGCTACGAGAACGCCATGAGGCAC 6453 29 100.0 32 ............................. GTCTTCGCCATACTGTTCATAGTGTTCGAATT 6392 29 100.0 32 ............................. CGAGCGTCCAACAGCACTCAAACCGATCGCAC 6331 29 100.0 32 ............................. TCGTGCGCCGTATTGAGGAACTGAACGACGCC 6270 29 100.0 32 ............................. GTCCCACAGGCCGACTACCGGCCACAACCAAA 6209 29 100.0 32 ............................. TCGCGTGCCTGCGGGAGCTTCGAGGACAGGAT 6148 29 96.6 32 ............................A TCAAGAACTGCTTCATCGTCGTCGCGGCCGTG 6087 29 100.0 32 ............................. CCTGTTCGACAGGCCCATCGGCAAACTCAGCG 6026 29 100.0 32 ............................. GCGGTCACCCGCATCGCCGGGCAGGCACGCGT 5965 29 100.0 32 ............................. CCGACCTTGCGGTCACTCAGACGTTCGACACG 5904 29 100.0 32 ............................. GCACAAACCACCGCAGATGGCAAGAACAAGAT 5843 29 100.0 32 ............................. AACCCGACACGCCTGAAAACACAAAGAAGTTG 5782 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================= ================== 49 29 99.8 32 ATGTTCCCCGCAAGCGCGGGGATGATCCC # Left flank : CGCTAGGGGACGAGTGGAATGAGGAACCATGGTAGTCATCGTTCTGACGGCATGCCCTGCAGGATTGCGCGGTGACGTGAGCAGATGGTTATTGGAGATATCTCCCGGCGTCTTTGTGGGACGTATCAGTGCTCGCGTACGTGAGAAGTTGTGGGAGCGCATCGTCGACACCCTCAAAGACGGCAGGGCCATTATGGTATTCTCAGCTAGGAACGAGCAGCACCTTGATTTTCGCGTATTCAGATCCGATTGGCAGCCAGTGGATTGCGACGGATTGCAATTGATCAAGCATCCAAACGAGGAGAAACGCGAGACTTACGCGGGGACGAAGCGGCATGGGTGGAGCAACGCTGCCAAATACAGGCGTGCACGCAAATACCGTGGATAACAGCCGTGCGTTTCGGCAAGTGTTTCTTCTTTTAGACATTGTAGAAAAGAGAAGTGAATAAAAACAGACTTCCTTCTTTTCTGATATGTTGAGATTATTGGGATTTCTTAGT # Right flank : TGGTCGAGCTTGTGCGCGTAGGCGCTCATGCTTTCCTCGTCGTCGCCGACGAGCAGGTCGGCCGGCACACCGGTCTTCTCACTCACCTGCTGGGCGATGCGCGTACGTTCCTGAGCTGCCTCCGTGCTCTTCTTCCATGCGCGCAGCTCATCCGCCTCCTTGACGGTTTTGTCGTGCTCCGCCTTGAGCTGTTCCAGCTCGTCCGCGGCGCTCTTGTTCGCCTTGGCGCGTTCCTCCCATTGGCGCGAATGCTTGGTGACCTGATCGAGCTTCGCCTGGAGTTCCTCGTTTTTGGCGAGGGCCTCGTCGAGCTGCTGCTGCACGTCATCGTTCGTCGCGGTCATGATGTTCCTTTCATCTGGCCCGTTTCGGGCAATAAAAAAGCACCCGTGCGGGTGCTTCATATCGTGGACTGCACCGGAATCGAACCGATGTGGCAGACCTTCCAGTCCTGGTATGCAAAAGGCCTCCAAGAATGGAGGCCTTTTGCGTTGATTCAC # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATGTTCCCCGCAAGCGCGGGGATGATCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [5,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCAAGCGCGGGGATGATCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [35.0-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //