Array 1 95439-95168 **** Predicted by CRISPRDetect 2.4 *** >NZ_CATM01000019.1 Salmonella enterica subsp. enterica serovar Agona str. 05.O.06, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================== ============================= ================== 95438 31 100.0 29 ............................... CCTGCTACCGACAGCGTCTGTAGTCCTGC 95378 31 96.8 29 ...............A............... CCTGATACCGTCAGCACCACCAGTCCTGC 95318 31 96.8 29 ......T........................ TCTTCGACAGTAAGCACCTCCAGTCCTGA 95258 31 100.0 29 ............................... TCTTCGACAGTAAGCACCTCCAGTCCTGA 95198 31 80.6 0 .....G..T.........A.....A.AA... | ========== ====== ====== ====== =============================== ============================= ================== 5 31 94.8 29 CGGCAACGGCGGCAGGCTGGTCAGTTGGTTA # Left flank : GCAACTCCAGTCCTGCCGGCAACAGCGGCAGGCTGGTCAGTTGATTATCTGATACCGACAGCACCAACGGCGGCAGGCGGGTCAGTTGATTACCTGCTACCGACAGCATCTGTAGTCCTGCCGGCAACGGCGGCAGGCTGGTCAGTTGGTTACCTGCTACCAACAGCCTCCGTAGTCCTGCCGGCAACGGCGGCAGGCGGGTCAGTTGATTACCTGCTACCGACAGCATCTGTAGTCCTGCCGGCAACGGCGGCAGGCTGGTCAGTTGGTTATCTTCGACAGTAAGCACCTCCAGTCCTGACGGCAATGGCGGCAGGCTGGTCAGTTGGTTATCTTCGACAGTAAGCACCTCCAGTCCTGACGGCAACGGCGGCAGGCTGGTCAGTTGGTTACGTGCTACCANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN # Right flank : TTATGAGGAATAACCAATGTTGTTATATGCGCTGGTAAACAGTCTGGTAAGGCGGTAAGGCCTGACTCTCCCACATTAAGCTCTCGACTGCCGTTATTCAGGCAGGTACATATTCTCTGTACCGTCGCAGCACGACCGCGTAACTCTTCTGCTGGCGCAGCCCTCTTCCATTCTGACCAGACAGCATCATACGCTGCTGGTGTCTGTGGAGCCGCCGGATCAGGAAGGGGGGATACCTGGAGTGTCCCGGATGCCCCTTCCGCATGTTCTGTACATTCCTCTCCCTGTTCTATGTCCATGGTGAAGCGATATGTTTCATTGTGCCCCTGGCAATTCACGGTATAGTTCCCGGCGTCATCAAGGGTGACCGACAATATCTCCTGGTTGTCTGCATCCAGGATACAGAAGTGGCTTTCCCCGTGGCGGCCGGAGTGAATGCTTTCCTCGTATCCGGCATACACGAGCATCCTGAGCTGTTCAAATCTGCTGACCACATCCTC # Questionable array : NO Score: 2.52 # Score Detail : 1:0, 2:0, 3:0, 4:0.74, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:0.92, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CGGCAACGGCGGCAGGCTGGTCAGTTGGTTA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,5] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [0.00,-5.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [58.3-0.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.64,0.78 Confidence: LOW] # Array family : NA // Array 1 109531-108180 **** Predicted by CRISPRDetect 2.4 *** >NZ_CATM01000001.1 Salmonella enterica subsp. enterica serovar Agona str. 05.O.06, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ======================================================================== ================== 109530 29 100.0 32 ............................. GAGGCGCTGGCCGCGCTGGCCGCAGAAAAATT 109469 29 100.0 32 ............................. GTAGCCTTCAGACACTTTAGCCAGGTTCCCTA 109408 29 100.0 32 ............................. AGCGAAAAAAAAGACGACGAACTCGTCACAAC 109347 29 100.0 32 ............................. CGCACCTGCCGGGACATGACCCTGCCGGAGCA 109286 29 100.0 32 ............................. AATCCCGATGATCATGAATATTTCTGGCGCCA 109225 29 100.0 32 ............................. GTCATTTTCTTGTTAATGGCGCTTGCATTAAC 109164 29 100.0 32 ............................. CTGTGTGGTCTGTGCATAACGGTGTAACAGAG 109103 29 100.0 32 ............................. CTGGGAAGATTGGGCGCTTTCAATATCTTCCA 109042 29 100.0 32 ............................. AAAAATAGTCCTGAACGATAGCCCGCGCGGTC 108981 29 100.0 32 ............................. CAGGAGTGGCTGGAGACTGTCGTCAAGCCTGA 108920 29 100.0 32 ............................. TTTTATAACGACACTAAAACCCGCCAGTTATA 108859 29 100.0 72 ............................. ATTTTAACGGCAAGGTCGACAGGAGATACCGGATAAACCGAATCCCGATGATCATGAATATTTCTGGCGCCA 108758 29 100.0 32 ............................. AATCCCGATGATCATGAATATTTCTGGCGCCA 108697 29 100.0 32 ............................. AATCCCGATGATCATGAATATTTCTGGCGCCA 108636 29 100.0 32 ............................. GATCATCACCCAGGCATTTTCTGGAATATGAA 108575 29 100.0 32 ............................. AATCCCGATGATCATGAATATTTCTGGCGCCA 108514 29 100.0 32 ............................. GCTAAAACGGCGCTTGAGAACAGTATCAATAT 108453 29 100.0 32 ............................. TGACGAGGTGCGAGCGATGGTATCAAGGCCTA 108392 29 96.6 32 .....T....................... GGTTAACCAGGGGTTTTTCCCCACTATTTCGC 108331 29 100.0 32 ............................. GCAGAAACAGAAACCGGATATGAGCCATCCAT 108270 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGGCAAGGGCTGAAAA 108209 29 93.1 0 A...........T................ | A [108182] ========== ====== ====== ====== ============================= ======================================================================== ================== 22 29 99.5 34 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTACTCGCTGCCGGTGAAATTGAACCCCCTCAGCCTGCGTCGGATATGCTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTCGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCTTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTTAGATTAGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTAGGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : TTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGATGCATTTTTCACACGTTGCTGGTATCCGTCTTTTTTACCCAGGTTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCAGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCGT # Questionable array : NO Score: 6.11 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:-0.11, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 126507-125817 **** Predicted by CRISPRDetect 2.4 *** >NZ_CATM01000001.1 Salmonella enterica subsp. enterica serovar Agona str. 05.O.06, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ==================================================================================== ================== 126506 29 100.0 32 ............................. GCGACTGTCTGGTCAGCACGCCGTTAGTCGCC 126445 29 100.0 32 ............................. AAATTGTCTGATAGATTGGCAAAAGCGATGGA 126384 29 100.0 32 ............................. CCAACTGGCCTAAAGCAAATCCCGGCTTAGGC 126323 29 100.0 32 ............................. GCATCCCGGACAACAGGATCATCCCATTTATT 126262 29 93.1 84 ...........................NN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTAGCGGGGATAAACCGCCAACTGGCCTAAAGCAAATCCCGGCTTAGGC 126149 29 100.0 32 ............................. CCAACTGGCCTAAAGCAAATCCCGGCTTAGGC 126088 29 100.0 32 ............................. GTTAAGGGGGAGTGAGATGCAGATAAAAACGA 126027 29 100.0 32 ............................. TTTCCAAAAATCACGTCACCCGTTGTGATCTG 125966 29 100.0 32 ............................. AAGGTTAGCGTTGTCATTGATCTGGTCGGCAA 125905 29 96.6 32 ............T................ AGCGGCTAAACCTGCCGGTTATCGCTGAGCAG 125844 28 82.8 0 ...............A.AA.....G-... | ========== ====== ====== ====== ============================= ==================================================================================== ================== 11 29 97.5 37 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTGGAATGTGGTGCTGATAAAAAGTAGTTTATAAACAATGATATACGTTTAGT # Right flank : TTGCATAATCATAATCTGTGTACCAGTAATGGCTGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTTCCGGGGAGGCTTTTATACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTATCGAATGATGTACACGCGTGACCCCCTGCCGATTGGC # Questionable array : NO Score: 5.74 # Score Detail : 1:0, 2:3, 3:0, 4:0.88, 5:0, 6:0.25, 7:-0.39, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //