Array 1 201565-203485 **** Predicted by CRISPRDetect 2.4 *** >NZ_QDOP01000001.1 Salmonella enterica subsp. enterica serovar Gaminara strain 158 NODE_1_length_497672_cov_25.3443, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 201565 29 100.0 33 ............................. TACCTATAATGTACATTTTAGGTACTTATTCGC 201627 29 96.6 32 ............................A AGAGCAGGAAGAGTTCAAAACGAACTCCGAAC 201688 29 100.0 33 ............................. GCTGCTTTCGACATGGGAAATCGGTGCGATGCC 201750 29 100.0 32 ............................. TGACACTGAGCGAAAAACAGCAGTTGTTTACC 201811 29 100.0 32 ............................. CCTACATGGAGATCGCGCAATGACCACGGCAA 201872 29 100.0 32 ............................. CATTTGAGCTTACCGCTACTTTATGCATTCAA 201933 29 100.0 32 ............................. TCAGGCCGCCAGACAGATAATCAGACACAATC 201994 29 100.0 32 ............................. CCTTTCGCCGCTGGTATAACGCTCCTCTGCCT 202055 29 100.0 32 ............................. GGATTTATTGCCCTTGTGGTTATGGGGGGGCT 202116 29 100.0 32 ............................. TGCCTGATACGGATGAAAACCGCCGCGCTGAT 202177 29 100.0 32 ............................. CCCGGTTTTACCGCCAACACTCACTATATTGT 202238 29 100.0 32 ............................. CGTTGCTGGCTATTCGAACTAACCTGATTGTT 202299 29 100.0 32 ............................. GCCTCAGCATTGTCATAACCCCACGCCTGGCA 202360 29 100.0 32 ............................. CAATCATCTGATTTTTTATCATTGAGAGATAT 202421 29 100.0 32 ............................. TCCGGGGAAAGAACTCGCCTCGTCCAGCGTCA 202482 29 100.0 32 ............................. GCAATATGAATAACAACGTACCACTCATCGCA 202543 29 100.0 32 ............................. GAGCACTTTTACTGTAGGACTTGTATGAATCT 202604 29 100.0 32 ............................. CGGCCGTAGCGCCGCTCAGTCCGGGGGATGGT 202665 29 96.6 32 ...........A................. CAATTGCGTTCTTGCTTATGCCCAGCGACTTA 202726 29 93.1 32 ..G.........T................ ATTTCAAACACTCCGGGTCTGCCAGCGCCTCA 202787 29 96.6 32 ..G.......................... CGGCGGCGGACGCCGCTCAGATAGCCAAAACC 202848 29 96.6 32 ..G.......................... TATACAGGATTCTCACACTTTGGTTTGGTCGA 202909 29 96.6 32 ..G.......................... CGTTTTTTTTATTTGTACTATTGTCAGTACCC 202970 29 96.6 32 ..G.......................... CGGAAACAAACAAAGTTTTGCGCGATTCCACC 203031 29 96.6 32 ..G.......................... CACCAGGTAACAATATCGTCCCCGACCTTTAT 203092 29 96.6 32 ..G.......................... GCGAAATTCCCCAGATACCGCGCATCGGCACT 203153 29 93.1 32 ..G.........T................ CAAAATTAATGTCCAGGACCTTATTAAGTTAC 203214 29 93.1 32 ..G.........T................ CTCGGGGATTTTGTGCCACCCAAAACGCTCGC 203275 29 93.1 32 ..G.........T................ TTGCCACAACCACAATGGATCAGGAGCAATTA 203336 29 93.1 32 ..G.........T................ GACGAGTTCTGGAAATGGTTAGCTGATAAAGA 203397 29 93.1 32 ..G..........T............... CCGGATGAAAACGCCTACCCGGAAGACTACGA 203458 28 86.2 0 ..G.........T..........-.G... | ========== ====== ====== ====== ============================= ================================= ================== 32 29 97.4 32 GTATTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGCTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACTTGTATTGCGCGTAACTGGCGTTTGTCGATGCAAACACATAAATATTTAAATATTGCCTGATGCATTACTAATTTTACGGACGGCCTGCCGATGCCGTCTGTGAGTCATCCATTACCTCGCCTTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGACAAAAAGTAGTTTATAAACAATGACATACGTTTAGT # Right flank : GTTGCATAATTATAGTCTGTGTACCAGTAATGGCTGGTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTATACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCATTGAAGGCCCGGCCAGGATTAAGCCTGTTGGTCGAGGATGAGTCTACGTCGATCTTGTTCGATACCGGCCCTGATGACAGTTTTATGCAAAACGCGTCGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGTGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGAAAAATAAAAAAATTGTCATGTGAAGTGGACTATTCACGCTACCGAATGATGTACACGCGTGACCCCCTGCCGATTGG # Questionable array : NO Score: 5.96 # Score Detail : 1:0, 2:3, 3:0, 4:0.87, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.83, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTATTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTATTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [68.3-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 220246-221496 **** Predicted by CRISPRDetect 2.4 *** >NZ_QDOP01000001.1 Salmonella enterica subsp. enterica serovar Gaminara strain 158 NODE_1_length_497672_cov_25.3443, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 220246 29 100.0 33 ............................. CCGCGCTCGATGCGGCTTATCATTAAAAATTAC 220308 29 100.0 32 ............................. GCGTGGAGTTCGGAGCCGGCATCGCTTGCTGC 220369 29 100.0 32 ............................. GTCATCACTGACACTGGCTGCGGCAATATCTG 220430 29 100.0 32 ............................. TTCGCTGCCTTGCTGAGGCTGAATCAGCCATT 220491 29 100.0 32 ............................. CGTATTTTTGAACTGGCCAGCGCCACCGATGC 220552 29 100.0 32 ............................. GGTTACGCGGGCGTCTGTTAAAGAGTCCTCGT 220613 29 100.0 32 ............................. CGCCAGCGCTGAGGTGAATTTTAACGGTGTCA 220674 29 100.0 32 ............................. AAACAACTCTGTCTATTTTATGAATAGTTAAA 220735 29 100.0 32 ............................. ATTTAACGCGTTTTTTGGGTTTTCCCCTTATG 220796 29 100.0 32 ............................. ACAAAATCGGCGGCCCAATCGCCGGCGCTGAC 220857 29 100.0 32 ............................. GCCTGCCGTCTTTTTATTGAGGTCTGTAAACC 220918 29 100.0 32 ............................. GAGCATACGGAAATTAAAGGGGTTAACGATCA 220979 29 100.0 32 ............................. CGCGCAACATTCATTACTGCCCACTATTCAGA 221040 29 100.0 32 ............................. AACGCGCCGCCTTAGAAAAACAGCGAGGGGAT 221101 29 100.0 32 ............................. CGTCCTGTACGTGGTAGCGATAATCGTAATAA 221162 29 100.0 32 ............................. ACGCTGAAAAACGATATTTCGCTGACCTATGC 221223 29 100.0 32 ............................. GCTGATACGCAGACGATCACAAACTATATGGG 221284 29 93.1 32 ...........................TT TAATCATTTTGTTTAAATCCCGGATCACCTCC 221345 29 100.0 32 ............................. GAGTTATTGTCACTCGTCAGTGATAATTTTCT 221406 29 100.0 32 ............................. CAAAAGGCCGACAGTGTGTACACCTCTAAAAA 221467 29 96.6 0 ............T................ | A [221494] ========== ====== ====== ====== ============================= ================================= ================== 21 29 99.5 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : CTTATTGAAGATGTTCTCGCGGCAGGGGAAATTCAACCGCCGTTACCTCCTGAAGATTCACAACCCATAGCGATCCCTCTTCCTATTGCGTTGGGAGATTCCGGTCATCGGAGTACCTAACGATGAGTATGCTGGTTGTCGTTACCGAAAATGTTCCTCCTCGTCTGCGGGGGAGGCTGGCCGTCTGGTTACTGGAAATTCGAGCTGGTGTGTATGTTGGTGATGTTTCCGCAAAGATCCGCGAGATGATATGGCAACAGGTTTCCGTTCTGGCAGATGAGGGAAATGTTGTTATGGCGTGGGCGACAAATACAGAATCAGGTTTTGAGTTTCAGACTTTTGGTGAAAATCGACGTATTCCGGTAGATCTTGATGGACTGCGATTGGTGTCGTTTCTACCTGTTGAAAATCAATAATTTAGAGATCTTTAAAAATTAGGAAAAGTTGGTGGTTTTTTTGTGCGCTAAAAAAGTATTTAAATTCAATTGGGTAGATTTAGA # Right flank : GTTTCACCAGCTTATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATTCGCCCAGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //