Array 1 213891-212397 **** Predicted by CRISPRDetect 2.4 *** >NZ_NOXJ01000004.1 Salmonella enterica subsp. enterica serovar Dublin strain D15-009047 scaffold_3, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 213890 29 100.0 32 ............................. CCCTGGTTAATGATGGTTGTCAGCTTAGCCAG 213829 29 100.0 32 ............................. GTGGCAGCTGAGAACCCGGAGGTTATCCGGTG 213768 29 100.0 32 ............................. GTGCCGTGTTTGAAATTCCCAACGATACGTTG 213707 29 100.0 32 ............................. GCGCGGCTCGCATGTCAAAAATTGTCGATACT 213646 29 100.0 32 ............................. TGGCAAACGAAAGGCCATGTTGGCATAAGTAG 213585 29 100.0 32 ............................. ACGTATTACGTTTATGTCCGCACCAAAAATGC 213524 29 100.0 32 ............................. CAACAGCCGGGAAAATGAAGGCTGAAGGGCAA 213463 29 100.0 32 ............................. AATCTAATTATGACGGCAAGGCGACTACTAAA 213402 29 100.0 32 ............................. AATAATCACATCACCATCACGCGCGACAACAT 213341 29 100.0 32 ............................. CGGTCTCCAGATAATAGCCGATTTATTTAAAA 213280 29 100.0 32 ............................. GCCCGCATTAAGCCGCTGACGCACTGGATCAA 213219 29 100.0 32 ............................. CGCTCGCAATCGAGGTTTGCGCCGAGTTGCGT 213158 29 100.0 32 ............................. GGCAATCATTAACAGCGCCGTTAATTCAGCGA 213097 29 100.0 32 ............................. GGAGACGAGAAAATCTTTAATAGTCTCAGCGT 213036 29 100.0 32 ............................. GATTGGCCCTTAGATAACGGGAGATCAAGCGC 212975 29 100.0 32 ............................. CATAACCTTCGCTACCACACTTGCCGGTACTT 212914 29 100.0 32 ............................. CCTTGAGGTTAGGGGAGTCAGGAAATTGCATT 212853 29 100.0 32 ............................. ACAAAATCGGCGGCCCAATCGCCGGCGCTGAC 212792 29 100.0 32 ............................. GCCTGCCGTCTTTTTATTGAGGTCTGTAAACC 212731 29 96.6 32 ............................T TAATCATTTTGTTTAAATCCCGGATCACCTCC 212670 29 100.0 32 ............................. GAGTTATTGTCACTCGTCAGTGATAATTTTCT 212609 29 100.0 32 ............................. CCCGTTGAAGATCTGGACGCATGGGGCAAAGC 212548 29 100.0 32 ............................. GTGAGCTCGGTTTTAATTTCGTCGCTAAGGTG 212487 29 100.0 32 ............................. CAAAAGGCCGACAGTGTGTACACCTCTAAAAA 212426 29 96.6 0 ............T................ | A [212399] ========== ====== ====== ====== ============================= ================================ ================== 25 29 99.7 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : CTTATTGAAGATGTTCTCGCGGCAGGGGAAATTCAACCGCCGTTACCTCCTGAAGATTCACAACCCATAGCGATCCCTCTTCCTGTTGCGTTGGGAGATTCCGGTCATCGGAGTACCTAACGATGAGTATGCTGGTTGTCGTTACCGAAAATGTTCCTCCTCGTCTGCGGGGGAGGCTGGCCGTCTGGTTACTGGAAATTCGAGCTGGTGTGTATGTTGGTGATGTTTCCGCAAAGATCCGCGAGATGATATGGCAACAGGTTTCCGTTCTGGCAGATGAGGGAAATGTTGTTATGGCGTGGGCGACAAATACAGAATCAGGTTTTGAGTTTCAGACTTTTGGTGAAAATCGACGTATTCCGGTAGATCTTGATGGACTGCGATTGGTGTCGTTTCTACCTGTTGAAAATCAATAATTTAGAGATCTTTAAAAATTAGGAAAAGTTGGTGGTTTTTTTGTGCGCTAAAAAAGTATTTAAATTCAATTGGGTAGATTTAGA # Right flank : TTTCACCAGCTTATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATTCGCCCAGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGAGGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGTGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCGT # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 231901-230653 **** Predicted by CRISPRDetect 2.4 *** >NZ_NOXJ01000004.1 Salmonella enterica subsp. enterica serovar Dublin strain D15-009047 scaffold_3, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 231900 29 100.0 32 ............................. TTGAAGACCGCGCTGATGCAATCCGCCAGGCG 231839 29 100.0 32 ............................. TCGGCATTGATCTTGTTCAGTTCAGCCGGTGA 231778 29 100.0 32 ............................. TGACCACAGGTTTTTCGTCTGCTGATGTCGGC 231717 29 100.0 32 ............................. GACAAGCTGGAACGTGATCGGCTTACTGATGA 231656 29 100.0 32 ............................. CGCCGTAAATTGTGGTACGTCGTGACTACAGA 231595 29 100.0 32 ............................. GCGACCTGCTCGACAGCATTCAGTTTGTTGTT 231534 29 100.0 32 ............................. GCAGCCGTGCGCAAGCGTGGCCTGACGATGAG 231473 29 100.0 32 ............................. TGCTGTTTGCAGACCACACAGGCGACAAATTC 231412 29 100.0 32 ............................. AGGGTGAACGAAGTCACTCTTAAATTTCTGAA 231351 29 100.0 32 ............................. TATGAATTTAATGTTTATCCTGGGCGCTATGA 231290 29 100.0 32 ............................. GTTAGGGAAGGTACTCCTGGCTAATTCTTTTG 231229 29 96.6 32 ............................A TTAGTATCAGTATAAATAACCACGTATTCACC 231168 29 100.0 32 ............................. TATGAGCCGATCTGGAACGTGAGCGCTGAAAC 231107 29 96.6 32 ....A........................ AGTTCGGCAGGTTTTAGTTCCGTCGCGTTTGC 231046 29 100.0 32 ............................. AAAATATAAAGTATGTTTTGTTTAATTCTAAA 230985 29 100.0 32 ............................. GCAAAACTCCCCAGATACCGCGCATCGGCACT 230924 29 100.0 32 ............................. ATAAATTATCGGGAAATCATAATCAGCGCCGC 230863 29 100.0 32 ............................. TCGAGTTCTGGCACGTCAGACTGACGTATCGC 230802 29 100.0 32 ............................. AAAACCCTCAAATATGCGTAACGGGAGGCTGG 230741 29 100.0 32 ............................. GGGATCGCGCTGGCGGTCGCATCCGTTGCCGT 230680 28 89.7 0 ............T...........G-... | ========== ====== ====== ====== ============================= ================================ ================== 21 29 99.2 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GCACGAAGTGCGCTGTACGCCTAACACCTGGGTAACGGTTTCACCAAAAGTGAATATGCGCGGGGGATATGACGTGCTTTCCCAGGCGCTGGAGCGCGCCAATGAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGCTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACTTGTATTGCGCGTAACTGGCGTTTGTCGATGCAAACACATAAATATTTAAATATTGCCTGATGCATTACTAATTTTACGGACGGCCTGCCGATGCCGTCTGTGAGTCATCCATTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGATAAAAAGTAGTTTATAAACAATGATATACGTTTAGT # Right flank : TTGCATAATCATAATCTGTGTACCAGTAATGGCTGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTATACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGATTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTCGGCGATGGGGAGCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCATGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGCAAAATAAAAAAATTGTCGCGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGACCCCCTGCCGATTGGC # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-71.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //