Array 1 376020-374831 **** Predicted by CRISPRDetect 2.4 *** >NZ_KV786060.1 Aerococcus sp. HMSC23C02 Scaffold728, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 376019 29 100.0 32 ............................. CAGCGTGTTTTCTGGGTACTTGATAGGGGTTC 375958 29 100.0 32 ............................. CACGGCCTAGGGACGCGCTATCCCCTTGTGCA 375897 29 100.0 32 ............................. GACAACACGGGGAGCTACCTCCGCCAGGGGGA 375836 29 100.0 32 ............................. CTTTTCGTTTCCGATGTTTATCTTTAAGGCAC 375775 29 100.0 32 ............................. ACTTACTACTATTGTTACTAACTGGAAGCATA 375714 29 96.6 32 ............................C ACAAAGTCTTCATCAGCAAATAGATCATACCC 375653 29 96.6 32 ............................C TAGACCGGGCGACTTCAAACATGCTTTACATG 375592 29 96.6 32 ............................C TTCAGGGAAGCTTGTCATCTCATTTAATGACT 375531 29 100.0 32 ............................. ACTGGGGCAGTCATTAAACAGGGCGACACCAC 375470 29 93.1 32 ...T........................C TACGGCCTCAATATCAACTGGGGCGGGTCCTG 375409 29 96.6 32 ............................A AGTTCCTGATGACTTGAATGAATATGTGTTAG 375348 29 96.6 32 ..............C.............. CTAATTGAAATGTGATAAAGCTCCCGACCAGT 375287 29 96.6 32 ............C................ CCCGAACATCTGCGAAGCGGTCGCCTCGTAGA 375226 29 93.1 32 ............C...............C GCCCTCCAGTCGTGGTGGATAAGTACGCCAAT 375165 29 93.1 32 ............C...............C GGAGAATTAGGCCTGATGCACCTAAAGAAGTT 375104 29 93.1 32 ............C...............C AACTACTTTGGCATGAAGGCTAGCCCCAGTTG 375043 29 96.6 32 ............C................ GACGGCCACTATAGCTATGATATTGCGATTTT 374982 29 93.1 32 ............C...............C TCGTCCTCCTTAATTGCTCGATTGGCAACTAC 374921 29 96.6 32 ............C................ ATATAAGCATAAAGTTCATAAAACGTGAACTT 374860 29 100.0 0 ............................. | G [374838] ========== ====== ====== ====== ============================= ================================ ================== 20 29 96.9 32 CTTCTTCCCGCATATGCGGGGGTGATCCT # Left flank : GATCCTAAAAAAGATCAAATGATCGAAATAGGCGCTTTAAAGATAGATGGGTCAGAAGAGAACATCTTTCATTCTCTGATCGCTAATAAGAAAATCCCTGAGCAAATTCAAAAACTAACAGGGATTAGCCAGAAAGACATAGATGAAGACGGTAAAGATGAATCGCAAGTACTTGCAAAGCTTCTCGAATTTATCGAAGGTCAGGTTATTGTCGGTTACAATATCAATTTTGATATTAGTTTTATTAATGAGCAATTGAAAAAGATGGGACAGGAGAATTTATCTAATCCAATTCTTGATTTAAAGACTATTGTCAAAAAGGAGAAGATGTTTCTAAAAAATTTTCAATTGCAAACAGTTTTAGCGAGTTACGGGATCAATAAAAAAGTCCCCCACCGAGCCTTGGAGGATGTTAGATTAATGGCTGAGCTCATTTCTAAAGTGAATAAATTTCCAGTTTACTTAAAAAAGAAAGCCCGGTAATACAGGGATCCTTTAGT # Right flank : ATTAGCGTTTACCCTCTAAATATTGCAAATTGTAATATATAATTAAGAAAAGAAGTGAATAAAGGGAGGTATAAATATGTTTCCTGAGATTTTGAAGAGCTACAGAAAATCAAGAGGCTTGACTCAGAAAGAATTGGCGAATAGGCTACACGTTTCTCAACCTACTATCGGGAGTTGGGAAGTTGGCAGGACGGAGCCTAACCAAGAAATGCAGAAGAAAATAGCCGATTTTTTCGGCATTTCTGTAAATACCCTATTGGGAGTAGATGATAACGATTCGGTTGACTTGAAAGTGTTACTTAAAAATTCAAGCATGACATACGGCGGAAAAGAAATAAGCGATCACGACTTAAAAGTCTTGGAAGGCATAGTGGAATCGCTGCTTGGCGGTGATGAAGGTGGGGATAGATAGCTTAATTTCAGATTTAATCGCTAAATATAATACAAACGATCCTTTTGAGATAGCAGAAAATGAAGGAATACTCTTCTCCTTCTTCCCG # Questionable array : NO Score: 5.62 # Score Detail : 1:0, 2:3, 3:0, 4:0.85, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.51, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTCTTCCCGCATATGCGGGGGTGATCCT # Alternate repeat : CTTCTTCCCGCACATGCGGGGGTGATCC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,3] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCCTTCCCGCACATGCGGGGGTGATCCT with 96% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-9.80,-9.90] Score: 0/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [76.7-66.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.64,4.91 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 279499-280321 **** Predicted by CRISPRDetect 2.4 *** >NZ_KV786044.1 Aerococcus sp. HMSC23C02 Scaffold1201, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ =================================== ================== 279499 28 100.0 33 ............................ CGCACGGAGAACGTCAAATAAAGAGGGGCTTAT 279560 28 100.0 33 ............................ TCACAGTGGAATGCCGTGTAAGGAACGCCACAG 279621 28 100.0 33 ............................ TCCGGTCATCAAGGACATCGAACCCGTAGACAA 279682 28 100.0 33 ............................ TGTGGCAAGTGGATATTACAGGGGTGACAAAGG 279743 28 100.0 33 ............................ TGGCTACGGCAATTTCAAAGATGGCCCGTAACG 279804 28 100.0 33 ............................ CCGTTTGGCCCCACTGGTCGACATGATGTTCGC 279865 28 100.0 33 ............................ CTGTTTGTATCATCTTCGGTCACCCATTTAATC 279926 28 100.0 33 ............................ CCGATTACGAAAATGAACGAAGGAGTTAAGGAG 279987 28 100.0 33 ............................ CATACCCTTGAACCTTATTTGGTTCTAAATCCT 280048 28 100.0 33 ............................ CCAACTTATTTTTTGAACGTTCTACCACATCTA 280109 28 96.4 35 ...........................T TGCTGAGTAGATAGTTAAAGGTAATCTGAACAGAA 280172 28 100.0 33 ............................ CTGTTATGCGCGGTATACAAAGAAGGATACTAC 280233 28 96.4 33 ...T........................ TATGCTAGCCGCCTACCCAGCCTTATTTTATTT 280294 28 75.0 0 .................A.A...TCCTT | ========== ====== ====== ====== ============================ =================================== ================== 14 28 97.7 33 CTTCTTCCCGCACACGCGGGGGTGATCC # Left flank : TTATCCAACAAATCATTCGCTTTGGCTTGATCGGAGTCCTTGCCACAGTGATTGACTTCGCTCTATTAACGGCCCTCACCGAATGGGGCTATGTTCACTACCTATTATCAGCGGGAATTGCTTTTGTTGTCGCTACGATTTTTAATTATCTTGCTAGCATGCGCTATGTTTTCGTGAGTCGTTTCTCTAAAGAAGAGCGGCTTCAGGAATTACTCCTGTTTGTTAGCCTGTCAGTGGTAGGTTTGATTCTCAACCAGTTCTTTATGTGGGCCTTCGTCGAGAAACTTGGCATCTATTATCTCCTAGCCAAAGTCCTAGCTACCTTCCTTGTGATGGCGTGGAACTTTATCTCAAGAAAATTATGGATTGAATAAGGCATGAGGTTATCACTGGTTAAAGTGACCGAGATGGCTTATAGTAGCTATAGGGGATTTTTTTAAAGTGAATGAAAATGGCCGAGGGATCAAAAAAGAAGCCTGATTTGATGGGATTTCTTTAGT # Right flank : TTACTCAGTTAGAAAATCAAGGACATAATTATTACTAACTCTTTTCCGCCTAGACGGATACTTTTACTTCAGCCCAGATGAAAGCAATATTCCTTTTTTGATAATATTTCCCGATATCCCGAGGGCTATCACTCAGGGGAAGGATATAGTCGACGCGCTTTATATGGCCAGTGATTGTCTGGGGATCCATTTGGCAGATGCTTTAGAGCGTGGGCAAGCTTTGCCTGAGCCAAGTTCGATGTCTTCCTTGTCTTTAGATGATTTCCTTCCAGATGATGATGATTTCCATTTTGAGCGCAACCAATCCTTTATTTCTATGGTTTTAGTCGATCTCGATGATTATACCAGCAATTAAATCAGCTTTTCTAATCAGAAGCGAAGAGCTTTTATTTTAAAGCGTCCAAACTTTTGATACAATAAGATTAAAATAAGTAAGTGAAGGATGATATTATGGCCGGAAAAGTACGTGCAGCTTTGACCCATGCTCAAAATACCCAACT # Questionable array : NO Score: 6.15 # Score Detail : 1:0, 2:3, 3:0, 4:0.89, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTCTTCCCGCACACGCGGGGGTGATCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCCTTCCCGCACACGCGGGGGTGATCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-9.90,-9.80] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-9] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [61.7-65.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //