Array 1 3141-2642 **** Predicted by CRISPRDetect 2.4 *** >NZ_JYDA01000004.1 Thermosipho melanesiensis strain 434 contig_3_A, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ======================================= ================== 3140 30 100.0 37 .............................. TATTTGGTGTGTGTGTATCTATTGTTCTCAGCTGAAT 3073 30 100.0 37 .............................. AATATATATTGGATCCGCATCAAGTAGTGACTTGAAA 3006 30 100.0 38 .............................. GAATTTGCGCTTTGTCAAGATTGCTGGGAAGAATATTG 2938 30 100.0 39 .............................. AGAAACAAAACAATTAAACAAACCATCATTGTTATTTTG 2869 30 100.0 35 .............................. GCCTCTATTTGTGTTAGTTTCTGAATTGCTTTCGT 2804 30 100.0 36 .............................. TGATGGAACAGTAAGGTTTCAATTAGCCATTCCTGC 2738 30 100.0 37 .............................. TAACGGCGAAATATGGCGCTCGTTTTGAGTGCTTTTT 2671 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ======================================= ================== 8 30 100.0 37 GTTTTTACCTTACCTTGGAGGAATTGAAAT # Left flank : TTATAAACTAGAAAAACATTTTTTGGATGATGAGATTTATACATCTCTAGTTATGGAGTGGTGAATATGTTTGTAATTTTGTATTACGATGTTAATAAAAAAAGAGTTTCAAAAATGCTTAAAACGTGCAGGAAGTATCTAACTTGGGTTCAAAATTCTGTGTTTGAAGGTGAAATTAGTATTTCTAACTTGGAGAGATTAAAAATCGAGTTGGAAAATATAATTAAAGATGAAGATTCAGTAGTGATATATACTTTCAAACAAATGTTTTACAGTAAAAGAGAAGTGTTAGGAAAAGATAAAAAAGAAGAAACAAAATTTATTTAGAAAAATCTGTCGATGTGTAATAGAAGAAAAACTCCGGGAGATCGACAGAAAACAGAATAACATTTTTGTAACTTAGGAATACATTGTGTTAATTATGTTAAATTTAATATGATATAGTTTCAAAAGTATTGCTCTTGAGAAAGAAATATGATAGAATATTAATGGATTCTATG # Right flank : GAAGTTTTAAAAAGTAAGTGTAGCTTATTAAATTTTTTAGCTTTAGAAGAAAATTGAGATATTGGGATTTGATTATTTTACAAATTTATTGATAGGGTTTCGAAGTAGAGAAATAGATATTTTGATTTCAATTGTTTTAATGAGAAAAATATATTTTTTGGGTTGATTTAAAATAATCTAGACAAAACAATGGTTATATTTTAACAAAAGATTTTAGCTTTACTGTTATTATTTTGTTTTAACTTTTGTTTTGGTTGTATTTTTAATTTATTAAAAACAAGAATAAATGTTTAAATTTAAGTTATAAGTATGATAAAATAAAAACGATCAGGTACATGTTGGAAAGGAGGAAGTTGTATGAGACAACGTATTTTGTTTAAGTTGGTAACACCAATAATTATTTTGGCATCTTTGATTATTGTAATATTTATAACTACCTACGTAATAACAACTTCTCAAAAGTTTGATGCGTTGATTGTTAATCTTGCAGGAAGACAACG # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTTACCTTACCTTGGAGGAATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:66.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-0.80,-3.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [78.3-75.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.87 Confidence: HIGH] # Array family : NA // Array 1 1203-189 **** Predicted by CRISPRDetect 2.4 *** >NZ_JYDA01000015.1 Thermosipho melanesiensis strain 434 contig_11_A, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ============================================ ================== 1202 30 100.0 40 .............................. CGCATCAAAGAATGCGAAGAAGAATTAACAAAACAAGAGA 1132 30 100.0 37 .............................. ACTTGACAATGGCGAATCATATCTGAAATCACAATCG 1065 30 100.0 38 .............................. TATGAATAAACAAGAAATGATAGAACTGGTGATTTTTC 997 30 100.0 42 .............................. ACTTGCATGATATTGAATATATAGGAGTTCTCAATTCTAATG 925 30 100.0 43 .............................. AAAATACATATAGGGTAGAGGATATAGTTGCATATTTTTACAA 852 30 100.0 43 .............................. TATTTTATTCTTCCGTCAGGACATTCATTAACGTTGCCCAGTA 779 30 100.0 44 .............................. GGTAACTTTTGAGTTGCCGCGTACCACCCTTGTGGAAAACCTTG 705 30 100.0 43 .............................. GGGGAAAGCATGGAGGTTGAAACAAAAATTTTGGGGGGAGGTG 632 30 100.0 38 .............................. GAAGAAGAGGAGCGTTAGTTTTGCTCCTCTTCTTTTTT 564 30 100.0 39 .............................. GAAAATTGGTGCAGCTGGTTATGATGGCCTTGTTATGAT 495 30 100.0 41 .............................. GAAACAAACAGGGACCCCGATATATGGGAGGCTCCCTGGAA 424 30 100.0 36 .............................. TCTTTTCTCATCCTTGGGGGTGATCGCCCCCAGGGA 358 30 100.0 40 .............................. GGAGGTAAAGGAAAAATACGGAATTGGAGTTATAAATTTA 288 30 100.0 40 .............................. ATGAAGTTATTCGTCGTGCTGATTTAAGTAAATTATTTAA 218 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ============================================ ================== 15 30 100.0 40 GTTTCCATTCCTCATAGGTAGATTCTAAAC # Left flank : TTCCGTTATTTTGCCCTCAAATACAGATTTCTGCACCCATTTTAAGTATTTCCTTGCCGTTTTTAAAACTTTTTGTACTCTTTTTTTATTAACATCATATACCATTATTACGTACATTCCGTTCACCCCTTGTTTTTAAAAAGGTATCCCCAGCTAACGCCGGGAATACTAAATCCAAAAAAACATAAAGACAAAGTACATCAATGTATCACAATTTTCAGCCAAAAACCTGTAACATATAAAACCGAAAAATTAAACAAGCAAAGTTTCTTTTTCAAAAATCCTTATCACAAATTTGTATGCAACCTTTATCCTTTTCATTATATTTAACGAATCATATTTAAATAATCTGACATAATCCAAAAAAAGATTACAAAAAAACTGGTGAGATTTTTTCTCACCAGTTTTTCATAAAAAACAAAAAATAAAAATTTTATTCCTTAGCTTTTGTATCATATCAATACAATCTGAATTATTTAGAATTTATATTATTACCACAA # Right flank : CTAAACAAATTTTTGAAAGAAGGGGGTGTGGCGGTAACTGTAGGTTTCCATTCCTCATAGATCGGGAGAGGGGCGGGTAGGGGAAGAGGGGAGATCTCGGGGGGGGCCGGATCATTAAAAAAAAAAAAAAGAGAAGCAAACGTGAGTCGACTGTGTGTAGACATAACTCGCGAGAGCGATAGATAGGTC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCCATTCCTCATAGGTAGATTCTAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:63.33%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.60,-0.20] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [60.0-80.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.27 Confidence: MEDIUM] # Array family : NA // Array 2 13265-12393 **** Predicted by CRISPRDetect 2.4 *** >NZ_JYDA01000015.1 Thermosipho melanesiensis strain 434 contig_11_A, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== =========================================== ================== 13264 30 100.0 41 .............................. TTCCAGGGAGCCTCCCATATATCGGGGTCCCTGTTTGTTTC 13193 30 100.0 39 .............................. ATCATAACAAGGCCATCATAACCAGCTGCACCAATTTTC 13124 30 100.0 38 .............................. AAAAAAGAAGAGGAGCAAAACTAACGCTCCTCTTCTTC 13056 30 100.0 41 .............................. AAAAGAAGAGGACTAAAAGTCCTCTTCGAAAATAATCTCTA 12985 30 100.0 41 .............................. TGGTAATAGCCACTTCCTTTTGTGCCTGGTTAATTAATTTG 12914 30 100.0 40 .............................. TCTCTTGTTTTGTTAATTCTTCTTCGCATTCTTTGATGCG 12844 30 100.0 42 .............................. ATTCTTTCATCTCCTTTAATAATTCATCTAAAAAACATAAGT 12772 30 100.0 39 .............................. CTATTTTCCTTTAAAAATCCTTTTTCTGATAAATATTTA 12703 30 100.0 37 .............................. CTGTGTGTGGACACCCTTGCTACCATCCCTGACGTGG 12636 30 100.0 39 .............................. CCGCAACCCCCCACCCACGATTTTTGTTTCTATTATTTT 12567 30 100.0 43 .............................. ACGCTATTCTCTCAGCGTATTTTTCTATTTTCTATATAAAACC 12494 30 76.7 42 ....T....A.G.TA.....AG........ TATCCATGGGAGCCTTCTTATAATTTTTTCTCTCAATCTCTT 12422 30 76.7 0 ......T....C..C..A..A.......TT | ========== ====== ====== ====== ============================== =========================================== ================== 13 30 96.4 40 GTTTAGAATCTACCTATGAGGAATGGAAAC # Left flank : AAGGTGACG # Right flank : TGCTTTGTGGTACATTCATATACGAAGTTTTTTAGTTTAGGTCTTCCTAATTATTAATTATTACTCAGTATATATTAATAAACATGTATTAAAAGGATATTTAAACGGGAGATTTTGTGACAAAAAAGTTTATTAGTATTTTTGGAATAAATAATTACTAAAGAAAATAAATATAAAAAACGATATTTTTGCAAACAATAGGGAAAAGACGATAAAGTTTTAATATTCTTAACTGAGGATACAAAAAAATTAAATTGAGACAACTAATCTATAACAAACTTAGAAATTTAAATTAGAAAACTTAATGAACGGTGGAATGTTAAATAAACAGAAGAAAGAAAAAATGTTCGCGTATTCCTATTATGCTTCGTACAATAAGAAAGAATTTGTATTATGAGTAAAAGTACTGGAGCAAATAAACATGATAGTAAAATCTTTGAAAAAACATTGGAAAAAAACAATAGAAAACCAAGAGCTGTAGCAATAGATGCTGGGTATAA # Questionable array : NO Score: 6.08 # Score Detail : 1:0, 2:3, 3:0, 4:0.82, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTAGAATCTACCTATGAGGAATGGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:63.33%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.20,-0.60] Score: 0/0.37 # Array degeneracy analysis prediction: R [14-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [73.3-6.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,0.41 Confidence: LOW] # Array family : NA // Array 1 22456-18575 **** Predicted by CRISPRDetect 2.4 *** >NZ_JYDA01000011.1 Thermosipho melanesiensis strain 434 contig_6_A, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== =============================================== ================== 22455 30 100.0 38 .............................. TAGTCTTGCTTCGAAAGGGCACGTCGCCGCAATAAAAA 22387 30 100.0 40 .............................. ATAATTTCAGCAAAGGGCTTTCTGTGATCAACCAAAATAA 22317 30 100.0 42 .............................. TGTTCAGATTCTTGTGCTTCTTCTTTTAATGTTTTAAATAAG 22245 30 100.0 44 .............................. TTTACCCCTACCCAAGCACCGCTTGAGGTAGGGGAATAAAACTC 22171 30 100.0 43 .............................. GTTGTAGTATTCGTAAAAATACATTGCTAAATGCTATTATATG 22098 30 100.0 34 .............................. TGCGAAGCATAAAATTTATAAAAATTTAAAATAC 22034 30 100.0 40 .............................. TGTGTTTCAGTAAATACCAAATATCTTGCATGTTTTGTTT 21964 30 100.0 40 .............................. TGACAATATAAAACAAATCGTAACTGTCACCGAAATCCCC 21894 30 100.0 40 .............................. TAAACTTTACTTCTAACAAAATCCTCATAATTAAAAAATA 21824 30 100.0 40 .............................. AACATAATACCCCACCTCCTCATGTAAATCAATTATTTCT 21754 30 100.0 40 .............................. ATACAAGTCAACAACTGTTAATTTTTCTACAATATAATCC 21684 30 100.0 40 .............................. TACACGACAGGCCATGGCACCTTCCCGCCGCTTCCTGGTT 21614 30 100.0 40 .............................. GGGGGTTCGATTATAGCCCCTTTTTTGACAATATAAAACA 21544 30 100.0 44 .............................. ATAAACTTTACTTCTAACAAAATCCTCAAAACTAAAAAATATCA 21470 30 100.0 42 .............................. CTGCAAGCTTTTCAAGTGCGACATTCAAAATTGTGTCTAATG 21398 30 100.0 36 .............................. GGTCCCCTATTATTGCGAGGACTAGCAGTTTAATAT 21332 30 100.0 41 .............................. CAGGGTCACACCCCGAGTGACCCTGCAAATTTTCTTAATTC 21261 30 100.0 35 .............................. AAGTCAATACTGCTCTGCCATGACCGCTATCATCG 21196 30 100.0 40 .............................. AAGGATTTCAACAATTCTATATCAATCCTCTTGAAATACA 21126 30 100.0 41 .............................. CCATTTGGAAGGTCAGATTGACCTTCCCGTTTTGCAAGGTT 21055 30 100.0 37 .............................. ACGTCTCGCCAATTTTATCGCCAGTTTCTGGATCAAT 20988 30 100.0 43 .............................. TCAATATCATGCAAGTCCACCATTACTTCTTCTGATAATTCTC 20915 30 100.0 40 .............................. CACCCCCGCCAAAAATTTTTGTTTCAACCTCCATGCTTTC 20845 30 100.0 43 .............................. GTATTTGTCCATATCCAGAACCCACACAATTATAAAATATATA 20772 30 100.0 46 .............................. TAGTTACACCATTACCTGATAAATTGCCAATGTTAGGGGTTTTTAA 20696 30 100.0 39 .............................. CCTCTAAAATACTTAGAAACAAATGCGCCTAAAATGTTC 20627 30 100.0 39 .............................. AAGAAATTTCAATACAATCACCCAGTCTTTGCACTTGAA 20558 30 100.0 41 .............................. TATTGGTAATGCACCATCTGATTTCGCATATATTGTATATG 20487 30 100.0 36 .............................. CAAGATATCGTTCCCAAACTTGTGTGTTGATGGGTA 20421 30 100.0 37 .............................. CGGTATATGGCGTTACGATTCCGGTTTGTATTGCTTC 20354 30 100.0 40 .............................. TTCTCGCAACCCTTTCAACACCTTCTTTTCTTGTTTTGTC 20284 30 100.0 43 .............................. TTAAATTGTCGCTCAAACGATACTCTTGAACCTCAAAAATACC 20211 30 100.0 42 .............................. CAACCTCTTCGATGCTACGTTTTAATTCTTCTACATGATCCT 20139 30 100.0 39 .............................. TTATTTATCTTACAAAACCAGGAACCCCAACAATTCGTT 20070 30 100.0 43 .............................. GTTTGTTTCATCATCGTTCCATATTTCAATTGGTAATTGTTTT 19997 30 100.0 40 .............................. GAAACGATTCCATTGTTAAGTAAAAAAAGAAGAGGACTTT 19927 30 100.0 41 .............................. TTTGTTTTTGGTTGCCTGAATCATACCTGATAATTTTTTGT 19856 30 100.0 38 .............................. GCGACATTGGTAAGTTATACACCAAGCGCGCTAAAAAA 19788 30 100.0 42 .............................. AGATTTTAGTTGATGTACTCTCTTGACAATGCGTTCAAATAG 19716 30 100.0 41 .............................. GCAGTTTTTTCAGCATCCCAGCCATTAGTCCAAAATTCGTC 19645 30 100.0 37 .............................. ATTAAATCTTCATAAAGTCCTATTCCATAATACTTTT 19578 30 100.0 47 .............................. TTGAATTCTGTGATGGATAAAATTTATAAAAATTTAAAATACATTTT 19501 30 100.0 40 .............................. CTATCAATCTTCCTGAAATATATATTTACATATTCACCAA 19431 30 100.0 37 .............................. TAAACTTTACTCCCTTCAAAATCTTCAAAACTAAGAA 19364 30 100.0 39 .............................. CTTTTATTTGATCTAAATCTGCGTTTAGCGGTAAGTATA 19295 30 100.0 40 .............................. GTACAAGTTTGATTAGGTCTTCCTCATCCAATTTATTAAT 19225 30 100.0 37 .............................. CGACGAAAATGATTTCTCCCTCAGAGGGGGGGACTAC 19158 30 100.0 41 .............................. CTGTCCTGCACCCTATCATAAATATTCCAAATACATATTTC 19087 30 100.0 39 .............................. TTATTTATCTTACAAAACCAGGAACCCCAACAATTCGTT 19018 30 100.0 38 .............................. TTTGGCAGCCACTGTTGCCTCAGCCACCGTGGCGGCAA 18950 30 100.0 40 .............................. TAAAAATACCCGCAGGCCATTCTTCATCAAAAATAATTGA 18880 30 100.0 40 .............................. TAACTTTTTGCCACGTTTTGTTGGCAACGTTTATTGTTTC 18810 30 100.0 38 .............................. GTAATATTTGGCTTTTTCAAGTTGATCCACGATTGCGT 18742 30 100.0 38 .............................. TGAGGCCTTGTCTTGAACCATATGCTTGGATATGAGAT 18674 30 96.7 40 ........................G..... TACATTTCATATCCAGTATCGTCGCAATATTGCAATGTTA 18604 30 93.3 0 ........................G....A | ========== ====== ====== ====== ============================== =============================================== ================== 56 30 99.8 40 GTTTAGAATCTACCTATGAGGAATAGAAAT # Left flank : CATAAAAGTTTGAAAACTATCTTACTCAAAATCGATAAATCAAGTAGCTCAAAAAAAACATGGCATTGGACTTATCCAACGCCATGTTTTGTTATAATAAATAATTAATTAAATAAAATCAAATCAATTTTTCGAAATAGTATAAATTAATATTGATGTAATTCAAAAAATAATTCAAATAAGTAAATTGTAGATATAAAAAATAATCATTTTATATTTACAAAAAAGAAAAAGTGAATAAAAACACAAATAAAACCGTTACGAAATTCACGGTAATTTTTCTGTAACAACATATCGCAAAGTATCTTTAATAAATGATTTGCAAAATGTCTTTTGTAACGTTTGTGTTAAGCAAGAAAAATAGTCCAAAAATTGAGTAGGTTTTCCGAAGCTAAAATGTGAATGAAGCCTCATGAATAAATAATTTTACAAATTAGAAACTTCCCGGAAATGCATTCGTAAAAAATAGGGTGTTATAATATTTATGGGGAAAGTGACGG # Right flank : TTTTCAATAGGGATTGAAATATATATTCAAAGAGTTACCTAACCACCCTTTTAAATTAAGGGTGGTTTTTATTTGATTACTTGACTTTTTAAGTAAGAAGAAAAAAGATAAAACAAGATGTGAAAATGTTAATTTTAAAAGGGAAAAATCATAGAGAAATACCTATTTTTGTAACAACAAAACAACGAAGTACATATATATCAAATATTTTTATTATTTTAGAAAGGTATAGGCGAAGAAGCTGTTTATCTTCAAGTTTAAAAAATAAAACTTAAAAACGGAAAAGACAACATTAAATTATGTGTAGGTTATGATATCTTAATAATTAACATTTTTTTATGGTGCTTTTAATTTAAAAAAATGTAAAGATGATATAATTTAGAAAACAAATATGGGGGGTGTCTTTTTTGAAAACAGTGGTTGTTTTAGATTATGGTTCGCAGTATACCCAGCTTATTGTAAGAAGGGTACGTGAAAAGGGGTATTATGCAGAACTTTTA # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTAGAATCTACCTATGAGGAATAGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:70.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.20,-0.60] Score: 0/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [73.3-61.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,0.41 Confidence: LOW] # Array family : NA // Array 1 137881-138514 **** Predicted by CRISPRDetect 2.4 *** >NZ_JYDA01000001.1 Thermosipho melanesiensis strain 434 contig_1A, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ======================================= ================== 137881 30 100.0 36 .............................. TATATCTTATTGAGGCTAAGTGGACGTGCATTTTAT 137947 30 100.0 39 .............................. ATGTTGGATTTCTTCTTTTATCAAGTGTGATAGAAATAA 138016 30 100.0 37 .............................. TAACAAAAAATGTTGTATTGGATTGACGTCGTACTAA 138083 30 100.0 39 .............................. AGACATTAACGCAAATACTGCTCTTGCCGCTCTTGCTTC 138152 30 100.0 36 .............................. TTAAGTAAGTTTTTGGATGGCAAGAGAAGTTTAAAT 138218 30 100.0 37 .............................. TGTGGATGAAAGAATTAGAATTCCCACACCATACACG 138285 30 100.0 37 .............................. TGTACGATGACTCTGGTCGGATTCTACACTCGTTTGA 138352 30 100.0 36 .............................. AAATATTGGTGGTGTTCTTCCTCAAGAATTTTTGGA 138418 30 100.0 38 .............................. ACATTATTGTCATCCTCTGTAACTAGTTACAACACGCC 138486 29 83.3 0 ....-.TT........T...A......... | ========== ====== ====== ====== ============================== ======================================= ================== 10 30 98.3 37 GTTTCTACCTTACCTTGGAGGAATTGAAAC # Left flank : TTTAAATACTTTATAACCTCCTCAAGTTCTTTTATTTTTACATCTACTTCTTCCGGATTGTTTGAAGACACAGCGCTTTTCACACAAGTTTCTAAATGTGAGTTCAATACCTCAACATTAGCTTTTTTAAGGAGAGATATGGTGGCAAGAATTTGTTTTGAAATGTCTATACAATATCTTCCTTCTTCTATCATTTTCATAACTGCCTCAAGCTGCCCTCTGGCATTCTTTAGTGTTTTTAACGCATTTTTATGTTTCATGTCCAAACCTCCCAAAATTCTTTTACACAAATGAATTATATCATATAGTTAAATGTACTTTAACAAACCATTTTTACATATTTTCTGTCGATCTTAGATAGCACAAAAACCCCTAGGGATCGACAGAAATTTTTGTTAATTTTTATTACAACATACTCAATTTATTTACACTTTACAGATTTATATTATTAAAAGTTGCAAAAAAATATTTTTTGTAATATAATATTTATGAAAACTATG # Right flank : CATCTCTCCTTGAGGGAAATTCGTTGAGGCCCTTTGAACTTTTTACCCTACCTTGAAAGTTGAAACTTATATATCCATGTTAAAATTCCAATAGTAGATATACTTACATTAAGGAGGCATAAAAATGGACTTTTGGAAAATTGTCCTTTTCTCTGTTCTCATATTAATGCTTTCTCCTTTTCAAGTGGAGGTTTCTTCTCATGAAAAGCAAGCATGGTTGAAAAAGGTTAAGGAATACGATGGTGTTCCCTACAAATGGGGAGGAAATTCAAAAGAGGGTATAGATTGCTCAGGACTTGTAATAGAACTTTATCATGCAATTGGAATATTTCTTTTTAAATACGAGAATACTTTGTTACTAGATGTAAGTGCTGATGTGTTGTTCAAATACAATACACGTCCAATAGAATTTTCTGAGTTAGAACCTGGAGATTTGATTTTTTATGATACCGAAAACGATGGAATAATAGATCACGTAGCTATTTTTGCAAAAAAGGAAA # Questionable array : NO Score: 9.17 # Score Detail : 1:0, 2:3, 3:3, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCTACCTTACCTTGGAGGAATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:60.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-3.00,-0.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [88.3-58.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : NA //