Array 1 173277-174952 **** Predicted by CRISPRDetect 2.4 *** >NZ_NNZL01000003.1 Escherichia coli strain MOD1-EC5890 MOD1-EC5890_3_length_298291_cov_106.768, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 173277 29 100.0 32 ............................. GCATTGACGCTTTAAACGACGACGGACGCCAC 173338 29 100.0 32 ............................. AAAACAGCCTTTAGATTAGTACCTGACGACCG 173399 29 100.0 32 ............................. TAAACGCACCTGGCGCGCCACTTTATCAACAA 173460 29 100.0 32 ............................. CGGCTTGTTTAATTGCGTGGAACGTCTCAATT 173521 29 100.0 32 ............................. ACGGCGTGGATTGAGGGACGGGTATTTGGTCC 173582 29 96.6 32 ............................T AGATCGCGCCACGAGGAAACGAATATGAACGG 173643 29 100.0 32 ............................. TGCCGCCAGGCCAGCGACACATCAGACAACTG 173704 29 100.0 32 ............................. GTCTGTGATGGCCTGCTCGTGAGTCCGCGGCG 173765 29 100.0 32 ............................. TTTTGATTTCATTAACGGCGCTCCCCATATTT 173826 29 100.0 32 ............................. TGCGCCGTAGCGTGTCCACCTATTGTAGTAAA 173887 29 100.0 32 ............................. ATACAAACGCGGTGTTTATCAATATGAATTTT 173948 29 100.0 32 ............................. GCACCACGCGTACCCCGATGTTTGTTTTGCCA 174009 29 100.0 32 ............................. ATCCGGCTATATCTTTGAGCATTACAGAAATA 174070 29 100.0 32 ............................. CTATTGCTTTCGTACAGATTTTCAGTGGTGCT 174131 29 100.0 32 ............................. AAAATTCTGTGTTTCGACCATTACTTCGGTAA 174192 29 100.0 32 ............................. ATTCTTGATCACGCTTTTACCGAAGTAATGGT 174253 29 100.0 32 ............................. GGGGTAGAATTATTCTTCGTGAGCGATTTATC 174314 29 100.0 32 ............................. CGGCGTTCCGTGCGGCAATTGGAATCACACCA 174375 29 100.0 32 ............................. CGTTCTGAATCCGATATTCTTCAGCACCTTCA 174436 29 100.0 32 ............................. AGCGTCAATCAGCGCGTCTATCGCGTCACTTT 174497 29 100.0 32 ............................. ATTTGGGGGTATGAGAGCGCCGAGCCGTTCGG 174558 29 100.0 32 ............................. GCTCCCTGTCAGTTGTAATCGATAACGTTGAT 174619 29 100.0 32 ............................. ATGTAGGGGCAATCGAACGATTCTCTGCCGAC 174680 29 100.0 32 ............................. CCTAGCCCGATTATCGGCATGAGCGATGCGGA 174741 29 100.0 32 ............................. TCGAAGAAGAAAGGGAAATAATGCGAGGAACG 174802 29 100.0 32 ............................. TATTACGCGCCAGCAATGCTGACAGCGGCAAA 174863 29 100.0 32 ............................. CGCGAGAGCCAGCAAAACGCCAGGGCACAAAA 174924 29 93.1 0 .A..........................A | ========== ====== ====== ====== ============================= ================================ ================== 28 29 99.6 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TGGATGAACTATTGGCAACGCTGACCGATGATAAACCGCGAGTCATTGCACTGCAGCCGATTAGCCAAAAGGATGATGCCACACGTTTGTGCATTGAAACCTGCATTGCGCGTAATTGGCGTTTGTCGATGCAAACACATAAATATCTAAATATTGCCTGATTAAACATTTATAAGCGTTATAAATGGGTGGAACCTGTAAAGACTTCTACTCATTTATATTGTTTGTCGCCTCTGAAAACTCCTCCATTTTACCCATCCAGGGCTAATCATTAGCATTCTCTACAAATTCTGTGGCATTAATTTTTCGCTGGAGTGAAAATTATTGCGGTAAAGTTTGGTAGATTTTAGTTTGTATAGAGTTATTTTAAATATTTACCTTTTTAATCAATGGATTAAGTACTCTTTAACATAATGGATGTGTTGTTTGTGTGATACTATAAAGTTGGTAGATTGTGACTGGCTTAAAAAATCATTAATTAATAATAGGTTATGTTTAGA # Right flank : ACCATATAACCCGTTATCTCTTTCTCAAGTTTTTATATTAGCAGTACTTGTAATAAGCAACATATCCACGTAACCCCTCATGTTCAAAATAGTTCTCCATGCCAGAGAAGTTCACAATTATCGATACAAAAAATTAAATTTAATCAAAGTGTTATTTGTATGATTCTTAAATCGTTAAGAAATTTTAATCTATTATTTTTTTAATGTTGAATTAATATCTATTAATTTTTTCTTTAGGTTAATAGTTTGTTTTTTAAGCTTGTTATTCATTGATTAAGTAATAAATCTGAAAATTTGTCTTTGTTTTGAGGCTAATGAGTGGTTTTACATTACCGTTTCTATACGCTGTTGATGAATAGTTCTTATGAATAAAGATATCCAGTTCATACTTTAAGTGAAAATTGATAAAGTGCGATTCGTATTGTCTTTTATTCTAAAGACATCGAGTGTAGTTAATATTCCTTGTAAAAACAGGGATAAACCGAACTAGTTAAAGTTTT # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [75.0-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 190469-191169 **** Predicted by CRISPRDetect 2.4 *** >NZ_NNZL01000003.1 Escherichia coli strain MOD1-EC5890 MOD1-EC5890_3_length_298291_cov_106.768, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 190469 29 100.0 32 ............................. CGACAAAATTCTCAAAACTCGATCAGGAAAAT 190530 29 100.0 32 ............................. CCACCGTTTTCGCCCACCAGGGCGCACAACCC 190591 29 100.0 32 ............................. GAAAAAGAGAAGGTAGAGAAAGCGGAATCTGG 190652 29 100.0 32 ............................. CAGGTCTATCGGGCGATCAATAAAATCGGTCA 190713 29 100.0 32 ............................. GCGCACCGTTGCGTCGAAAAGGCGCTGGAGAT 190774 29 100.0 32 ............................. TACGCTTACACAACGGGCGAATATTTTAACGG 190835 29 100.0 32 ............................. GAACCCAATAGTGAAATACAGCATCATTTTTT 190896 29 100.0 32 ............................. ACCTGGAGGCGAAAAAGGCGCTTCGACGTAAA 190957 29 100.0 33 ............................. GAGGCCTATATCTCTAACCGCATCGGGCTGCGC 191019 29 100.0 32 ............................. GGGCAAATATAAATTCCAGCGTGCTTCATGAA 191080 29 100.0 32 ............................. CTGCGTAGCGACCTTTGCTCTCAATTTCGTTG 191141 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================= ================== 12 29 100.0 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTCCTTGCTGCAGGTGAAATTGAACCACCACAACCCGCGCCGGATATGTTACCGCCTGCCATCCCTGAACCTGAAACGCTGGGTGATAGTGGTCACCGGGGGCGCGGCGGATGAGCATGGTCGTGGTTGTTACAGAAAATGTCCCTCCGCGCTTACGTGGACGGCTCGCAATCTGGCTACTGGAAGTGCGTGCCGGTGTGTATGTTGGTGATACATCAAAACGTATTCGGGAGATGATCTGGCAACAAATTACCCAACTGGCTGGTTGCGGAAATGTGGTGATGGCCTGGGCGACCAATACCGAATCGGGTTTTGAATTTCAGACCTGGGGAGAAAACAGACGTATTCCGGTGGATTTGGATGGGTTACGTTTGGTTTCTTTTCTTCCTGTTGATAATCAATAGGTTATGTGTTCTTTAAAAATAAGGAAATGTTTGAATTTAGTTGGTAGATTGTTGATGTGGAATAAATTTGTTTAAAAACAGATATGTATGCTTAGT # Right flank : GGGCGCACTGGATGCGATGATGGATATCACTTGGAGTTCCCCCGCCCCTGCGGTAGAACTCCCAGCTCCCATTTTCCAACCCATCAAGACGCCTTCGCCAACTCTTTCACCAGAGGTAGCATTATCCGCATAACGTCACGGCAGCGACGTTCTATTCTTCCAGGAAGTGCCTTATCAATATGCTGTTGATTATCAAACCTGACGTCATGCCAGCTATTTCCCGCAGGGAATGCGGCTGTTTTTGCGCGTTGCTGATAACCATCCTTATTCCCAAGATTCCAGTTAGTCGCTTCCACCGAAAGTACAGCAATGCCCGCTTTGTCGAATATTTCTGCGTCATTACAACACCCGGTGCCTTTCGGATAGTTTTTATTCAAACCAGGATTGGTCGTCGCGGCTATTCCCTGACTGCGCGCAATTGCCAGTGCCCTGTCGCGCGTTAATTTCCTTACTGCTTCAGGGGTTTTTACACCGCTGTTGAAATACAATTTATCGCCAAC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [73.3-40.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.51,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //