Array 1 2000-49 **** Predicted by CRISPRDetect 2.4 *** >NZ_LIKU01000031.1 Listeria monocytogenes strain LM83 cont31, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =============================== ================== 1999 36 100.0 30 .................................... GCAATAGACCAGTTAGGTGTCACAGGTGCG 1933 36 100.0 30 .................................... GATAGTAGTATAATAACTGTGCTAATATGG 1867 36 100.0 30 .................................... TTCGTACCATAGTATACACATGCAGGGGCG 1801 36 100.0 30 .................................... CATATAGATGTTTCCTTTCTACTCGTATAT 1735 36 100.0 30 .................................... AAATATTATTCAATGCTGTAACTGTAAAAG 1669 36 100.0 30 .................................... TACTTTTATTGTCTGCTAAGAATACTACTA 1603 36 100.0 30 .................................... ATTGTACAAATTCCAAGTAACTCATCATTA 1537 36 100.0 30 .................................... TTTTTCACGTTTGTACTGTCTCTCCTCGTA 1471 36 100.0 30 .................................... TAACTTTAGATACTGCTAAAGAATTAGCAA 1405 36 100.0 30 .................................... TGTCTGAATGTAGTTAATATCTTCAACTTG 1339 36 100.0 30 .................................... CTTCAGTTTCACCTGTGAATACGCCGTTTA 1273 36 100.0 30 .................................... GCGCTTCAGTTTCAGCATTGGTCTTCTTAG 1207 36 100.0 31 .................................... TCTCTTGCATTTGGTTCTGAATAATCTCGTA 1140 36 100.0 30 .................................... AGAGCAATGTAGTCATTCAGCCAATGCCCT 1074 36 100.0 30 .................................... ATATGGGGGCTTATTGTATGGCTAATATAC 1008 36 100.0 30 .................................... ACGGGGCATTTAATGTTGGCAAGCGCAATT 942 36 100.0 30 .................................... TCCTCAGATAAGGTTTAGTACGCAAGACTC 876 36 100.0 30 .................................... TCCACTTCGACGCTGGACGGGCTCTCCTCA 810 36 100.0 30 .................................... CAATGCTTGGGGCTATGATGGCATGGATAA 744 36 100.0 30 .................................... CTCTTTTCGATATTCCGGAAGAGGTACTCC 678 36 100.0 30 .................................... CTTTTGTGTCTTCGGTAGCTTTGTCCATTA 612 36 100.0 30 .................................... CCAGAGTCGCTTTTTCTTCCGGCCAGTCTG 546 36 100.0 30 .................................... GTGTGTTATCTATTTGTAGCGTGGGTGTAT 480 36 100.0 30 .................................... ATATACAATGTCTAAGCTTAATCTTTCGGT 414 36 100.0 30 .................................... GAAATAATATTGATAATATCGCTCTTGCTA 348 36 100.0 30 .................................... AGTATTTATTATCTCTATTACTTTTGTATA 282 36 100.0 30 .................................... CGTATTCAAAAGTATATCCGCTAGCCTCAA 216 36 100.0 30 .................................... TAGGTTTAGGGAGTAAATTAGCTCCTTTGG 150 36 100.0 30 .................................... GGTAAAACAAGCATCGGCGAAGCAGTAACA 84 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== =============================== ================== 30 36 100.0 30 GTTTTAGAGCTATGTTATTTTGAATGCTACCAAAAC # Left flank : GACAAATTAACCGCGACGATTAGCGAGTTGATAGGTTACGAATTATTGGAGCATGAACTGGATTTAGAAGAAGATGAAATAACGGTCATTGAATTATTCAAAGCTTTAGGAATAAAAATAGAAACAAAAAGCGATACCGTATTTGAGAAGTTAATTGAAATAGTACAAGTCTATAAATATCTATCTAAAAAGAAATTGTTAGTACTTATTAACGTGTGTTCCTATCTTACAGAGGAAGAACTGCTAGAGTTGAGACAGTATATCTCTTTATATCAAGTCAAAGTACTATTTATTGAACCTAGAAAAATAAAAGGATCTCCGCAAGTTACTTTAGATTCTGATTATTTTTTACATGTGGAAAATAGTGTATAAGGTAACTGCTGTTCTTTGAAAACAAAATAAATTTTATGTAAACCATAAAATAGCATTCAAAATTGAAATCTTGCTATGGATGAATGGCGCGATTACGGAATCTTGGAGGAAAGAAAAAATTCTGCGAG # Right flank : CTCCTAAATCTGAAAACAAAAACTACGAGTTGTTTTAGAGCTATGTTAT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAGCTATGTTATTTTGAATGCTACCAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:69.44%AT] # Reference repeat match prediction: R [matched GTTTTAGAGCTATGTTATTTTGAATGCTACCAAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-0.80,-1.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [56.7-56.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.87 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], // Array 1 50-551 **** Predicted by CRISPRDetect 2.4 *** >NZ_LIKU01000032.1 Listeria monocytogenes strain LM83 cont32, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =============================== ================== 50 36 100.0 30 .................................... CGACGGAAAAATTAGACGACGCTAATGTGC 116 36 100.0 30 .................................... GGGCAACGATATTTGTAGATAACAGGGAGT 182 36 100.0 30 .................................... TACGATGTTAAGCGGTGGAGTAGATCAGTA 248 36 100.0 31 .................................... TATAGTCTGTTTTTTCGTAAGTGAGCAGCGC 315 36 100.0 30 .................................... TTGGGCAAAATGACCGTAATAAATCCATTC 381 36 100.0 30 .................................... TTAGCACTTATATAGAAGCCCCGCCCCTAC 447 36 100.0 30 .................................... AGTGATGGGGAAGAGATTGAACTTATGTTT 513 36 86.1 0 .............A.....C.....T.A.......G | A,A,C [538,544,547] ========== ====== ====== ====== ==================================== =============================== ================== 8 36 98.3 30 GTTTTAGAGCTATGTTATTTTGAATGCTACCAAAAC # Left flank : TTTTGAATGCTACCAAAACAAAGCAATAAATCAGATCATAAAGGAGCCTG # Right flank : GATAAAATGCATCGCAATTACCAAACCATGGTTAAATTTAAAAAGGAGTTAGGCTATCTATATGACACAGTATCACTATCTTGCTTCGAAGTCGCTCTTAGAAAATGATGGGGAAAAGTTCCCTCGTCTTTATATTAGACTTCTTAAATTTGAATTTTGATATGAATGTTGACCAAGACACTAATGAATTGTTTTTCTATTCAATTGATTTGAACTCAGCTTGTAAATGTAAGTAAAGAGAACCTGCCGCTGAAAGGTAATGGGCAAAAAAATTGTTACGAGACTAAAAATTTAAAAATCTTGTATGATTATATTCTAAATACAAGTAAAGATAATGAAACGATTGAACTATATACTGCTTGAAACAGCGAGGAAGATTTCCTGTTTTTGAATAAAACAGAACTGCTGATCTAGAATTTAACTATCGAAAATCTAATTTTAAATGACAGAGAACTATTAATAATTAGAAATGAAAACCGATATAACTTTTAGCACCATTC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAGCTATGTTATTTTGAATGCTACCAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:69.44%AT] # Reference repeat match prediction: F [matched GTTTTAGAGCTATGTTATTTTGAATGCTACCAAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-1.30,-0.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [55.0-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,0.27 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], // Array 1 27434-26105 **** Predicted by CRISPRDetect 2.4 *** >NZ_LIKU01000016.1 Listeria monocytogenes strain LM83 cont16, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ===================================== ================== 27433 29 100.0 37 ............................. CAATGCTTAAACCGAGAGCATCAAATTGTTCCCATGC 27367 29 100.0 36 ............................. ATTACAGTACAAGCAAGGGTTATTGAGTTAAATATT 27302 29 100.0 35 ............................. ATTAATGATAAGAGCGGAAAGAAAACTTTCAAGGG 27238 29 100.0 37 ............................. TCCCCCTTAAGATACAAACTCGATTTGACAGGTGCAG 27172 29 100.0 36 ............................. TCGTTTATGACCTTATGAAAGAGTTAACACCTCGAC ATC [27163] 27104 29 100.0 36 ............................. CTTCCTACTTTTTGACATAAAAAATAAGCCGAGTTG 27039 29 100.0 36 ............................. AAGTTCAAAACCTCCCACACCCGCTATGAATAAATT 26974 29 100.0 37 ............................. TTCGTAATTTTACGATTATACTTTTTAGTCAAATTAC 26908 29 100.0 35 ............................. GTAACAAGTAGTGTTATACCTGCAACAATACCAGT 26844 29 100.0 36 ............................. TGGAAATGGGAAGAAAGAAATGCACTGATTGTAGAG 26779 29 100.0 36 ............................. GTCCACATCGACAATAAAAAACACATTGTATCACTT 26714 29 100.0 36 ............................. CTGGTTACTCAACTGGCGACAGTAATACACCTCAAT 26649 29 100.0 34 ............................. TTTGGATAGGTTGTTTCTGATAAATAGGTTCACG 26586 29 100.0 34 ............................. AGAAAAAAAACATCTTTCCAATTTGTTGTTTTGC 26523 29 100.0 37 ............................. ACAAGTGCTAGAACAGAAGTTATAATTTGAACATTAC 26457 29 100.0 34 ............................. AGAAGCGTTAGCGGCATTGTTCGAAAGTAATTTA 26394 29 100.0 36 ............................. TATAAAATATTGCCCAATGTGCGGAAGGAGTTTGGA 26329 29 100.0 37 ............................. AAGAAATCCGGGAAGTTTTGTTCTACAGAGCGAACGG 26263 29 100.0 36 ............................. GTGTAATTCTTAATTCCGTATTGATTCGCTAGTTTT 26198 29 100.0 35 ............................. TTTTGAAATATGAGGACTTAGAAAATGAAAAAAAT 26134 29 93.1 0 .......................C....C | A [26109] ========== ====== ====== ====== ============================= ===================================== ================== 21 29 99.7 36 GTTTTAACTACTTATTATGAAATGTAAAT # Left flank : CATTTAAAATTTGGTGGTGAAGATATGTATGTAATTTTAATTTATGATATTTCAATCGAAAATGGTGGAGCAAAAGTCTGGAGAAATGTATTTAAGATTTGTAAAAAGTACTTAACTCATGTTCAAAAATCAGTTTTTGAAGGTGAAATAACTCCAGCGCTTTTAGTTAAGTTAAGGATGGAGTTAGATAAGTATATTCGAGATGATCAAGATTCAGTAATTGTTTTTTCTAGTAGACAACAAAGATGGCTAGAAAAAGAATTTTGGGGATTAACGGATGAAAAGACTTCTAATTTCTTTTGATGTTCTCGGTCTGTCGACCTTTAGTAGTGCGAAAAATAGTGGGGTTCGACAGATTTAGGGAAATCATTGGGGGAGAAAGAGTTTGAAGTTTTTAAGCGAAAATCTGAAGGGATAAGTTATGATTTTTACGTAATTTTTAAGAGGTCGACAAAAATAGTGACCTGAGTTATGATGGGAGTAGGCGTAAAATAGAGCGG # Right flank : GTCTTCTTAAAATTTAAACCCCAAAAATAAAAAAGGCCAGGACTCAAATCCAAGCCTTTTCCTACACTCCTCTAAACCAACAAAACCACAACCAACGCCAAAACCGCCGGCAAGCCCTGTTTCACCAAAATCCCCTTAGAAGAAGTCGCTCCGCCAAACAGCGCCGCCACAACCACACAACTCAAAAAGAAAATCTGCACAGTCTCCGCCATTCCTGCTCCCGCGAAAAACAATCCCCACACAAGTCCTGCCGCAAGAAAGCCATTATAAAGCCCTTGATTCGCAAATAGTGTCTGTACTTTCTTATTCGCAAGTAGTTCTTTCTCCACACCAAACGTCTTGGCTGCAAGGTTGGTATTGGCGAAAAACATTTCTAAAATCATTATATAAATATGCTCGATCATTACGATGAAGGTTAAAATAAATGCTAAAATGGCCATAAAAAATCCCTCTTTTCTACTCCGAAGTATAGCATAGCTTGTAAATTTTTCGTAAAAATA # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAACTACTTATTATGAAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:82.76%AT] # Reference repeat match prediction: R [matched GTTTTAACTACTTATTATGAAATGTAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [3-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [66.7-56.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.68,4.5 Confidence: HIGH] # Array family : II-A [Matched known repeat from this family], //