Array 1 422399-421770 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP035698.1 Vibrio cincinnatiensis strain 2409-02 chromosome 2, complete sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 422398 28 100.0 32 ............................ ATACTTAACAATCCCCACGTGAAGCTTGGGTA 422338 28 100.0 32 ............................ TACTGGCAAGCAAAATTTTAACCGGTGGAGCT 422278 28 100.0 32 ............................ TGAGGATTTTTCTTTTGAGCCAAGCTTACCGG 422218 28 100.0 32 ............................ GCTAGAAGGAATAAAGTACGTTCCTTACTATG 422158 28 100.0 32 ............................ AGCTAATTGCTCGGCCGTTTTACTCTCACCAA 422098 28 100.0 32 ............................ TGTTGCGACATCTTCACCGCGCCCCGTTAAGC 422038 28 100.0 32 ............................ GGACAGTGGCATGAACAAAACCTTTATCGCAA 421978 28 100.0 33 ............................ CGGTTCGGATACCCGCTTTTGTTCTAAATGACA 421917 28 100.0 32 ............................ CATTGCTCAATCTGGTTCAGGTAAAACGTAAA 421857 28 96.4 32 ....................T....... ACCAAAGTGATGCATTGCTGCATATGGTTCAT 421797 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================= ================== 11 28 99.7 32 GTTCACTGCCGCATAGGCAGCTTAGAAA # Left flank : AATAAATTTGTAGCTGCTCTTTTTGCTATTGTTTCAGCAATTGTTCTCGTGTTTCTAATAGCTGCAAATGAAGTTGACTTTTTAATTGTCTTAAAAATGGTGTTACTAGCTTTGTTTTTTCTAGTTTGTGCTCTTGGCGTGCTAACACAAAATTTTCCTATAATTGCAGCGAGACGCATAAAAAATGAACAGGAACAAGTGGTAAGCAATAATTCGGGAGATGTATAAATTTAACAAAGCATTTAAGAGGGACAATCAACGCGTGGCATTTTTGGTTTGGTTGGGTATTTGAGGTGACGGCTGGCTAGTTTAAGTTCAGTTGTTTGCGTTGCTTGCCCCTTAATGCGGCGTTAACTGGCAATGAAATTACCCATCTTTTTCCGTTGAATTCTAACTTATTGATTTATATTAATAATAAATCGAGTAAAAAATAAAAGGTTATTTTGAGAAATTTGATGTAATTACTATTATTAACAATAAGTTACTGCTAAAGTTTCATA # Right flank : TATTGGTAACTTTGGCATTTTGGATCGGCCAGTTAACAAAGCATTTAAGAGGGACAATCAACGCGTGGCACTTTTGGTTTGGGTGAGCATTTGAGGTTACGGCTGGTTAGTTTAAGTTCGGTTGTTAGCGTTGCTTGCCCCTTAATGCTGGGTATTTTAAATATTTCACAATGAACAGACATAAACAAGATTGTCTTTTAATGTGTTTTAATTCAATTGGTTGTGATTGGTTTGTTTGTTCTTGGTTGTTCATCTCTGCACGTTGATATACAATATTTTTGCTACATATTGGCTACACGGCAGGGTGCAACTCATGGCTATCAAGCAAAAAATCACCGCGACCTCTATCAAGAATCTCACCGTTGAACAGGAGCGGCTGAACGATACGGAAATCAGCGGCTTTCATGCCCGTATCTCACCTAAAGGTGCTATCAAATACTATTTCTACTATCGACTGAAGGGTAAGCAACGAAATTACCTGATTGGTTCTGCTGAGGCAT # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCATAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGCATAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [61.7-80.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 502246-501857 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP035698.1 Vibrio cincinnatiensis strain 2409-02 chromosome 2, complete sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 502245 28 100.0 33 ............................ AGTCTGTCTCATTTGAAGTGAATCCAACGATAT 502184 28 100.0 32 ............................ ATCTAAAAGAGATTCAGCAAGCTCTGCATCAC 502124 28 100.0 32 ............................ GAAAGAGCTGGCCAGTGCCATGCAGCAACAAT 502064 28 100.0 32 ............................ TGCAACCTCTGAGAAGAGTATGAACTTGCTGT 502004 28 100.0 32 ............................ ACAGCGGCAAGTCTTTTTAGAAGCGGTGATAA 501944 28 100.0 32 ............................ GACAAATTGAAACTGACGAATGCCATTGACAC 501884 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================= ================== 7 28 100.0 32 GTTCACTGCCGCATAGGCAGCTTAGAAA # Left flank : TATTTGATAAAGCATCCTGAATGTAAAACGGCTGATTCAGAAAGTGCGAAATGCTTTAGTTGTGGTTCAGATAAAGTGATTTTTCAACCATTAACAGCTCATGCAGATCATCGTTATAAACATATTTGCTTATCTTGCAAAAAAATACTTTTTAGAAGTAAGGCAATAATGTCTTAAATCAGTTGATGATCCTAAGAACATTTTCAGTAAAATCAGCTGGTTGTAATAAAACATAACAAACGGTTCAAGAGGGACAACCAACGCGTGGCATTTTAATTATGCGTTGGTTTTTGTGATTACGGTGTTATGCGGGAAGTTGGTAGTAGCGTTGGTTGCCCCTTAACCGGGCGTTAACTGGCAATGAAATTACCCATCTTTTTCCGTTGAATTCTAACTTATTGATTTATATTGATAATAAATCGAGTAAAAAATAAAAGGTTATTTTGAGAAATTTGATGTAATTACTATTATTAACAATAAGTTACTGCTAAAGTTTCATA # Right flank : TATTGGTAACTTTGGCATTTTGGATCGGCCAGTTAACAAGGCATTTAAGAGGGACAATCAACGCGTGGCATTTTTGGTTTGGGTGAGCATTTGAGGTTACGACTGGCTAGTTTGAGTTCAGCTGTTTGCGTTGCCTGCCCCTTAATGCGGCGTTATGTAACCGTAAAGAAAAAGACCGCAATGCATTGAAAATTAAAGTATTTTTATGATTTCTTTACTTTGAGTTTAGCTTCTGCTTTGCATGTTTTATTCTTTTAACTGATTGTTTTAATGGGTTATTTTTAAAGTTGTAAATCCAGTTTTATTCATATTGGTTTAGGTTTAGTCTTCTTGTTCCTCGAGTCTTTACTCTGGGCTTTAATGGTAAAACGAGTTTGCGTTCAGCTTGTCTATAGTCATGATCCGCAGAATCAAGTGGCTTTTGTTATTGCCAGAGTTTTTTCTACTGGGTCAATGCTGACTTTTCGTGTAAGTTAAATCGTGTTTGGCGGTGCTATTTT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCATAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGCATAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [60.0-80.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.51 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 3 556558-555929 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP035698.1 Vibrio cincinnatiensis strain 2409-02 chromosome 2, complete sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 556557 28 100.0 32 ............................ AGATGCCGGTTGGTGTCACCCCTATACAACAA 556497 28 100.0 33 ............................ GTTTGATGCATTATTTTGGTGTTTAGGCTCCCA 556436 28 100.0 32 ............................ AAAAGATTTATGGACTACAAAAAGCAGCTCCC 556376 28 100.0 32 ............................ AACTAGAGACTTCGGCATACCTCACATCACTA 556316 28 100.0 32 ............................ CGAGGATAATCCAGTTGACAAGCGCATTGTCG 556256 28 100.0 32 ............................ TTCCTAGCGCCGCCAGCTTGAGCAACCAGCGC 556196 28 100.0 32 ............................ TCCTAACGGGGGCGTTTTACTTTAAGGTGAAC 556136 28 100.0 32 ............................ AAGCTTAACTATTCCGCAAGACCTTACTGATC 556076 28 100.0 32 ............................ ACATAGAACAAGCGGTAAGCCTTGCAAACAAC 556016 28 100.0 32 ............................ CATAGTTTTCACTATTGATGTCAGTTTCATAG 555956 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================= ================== 11 28 100.0 32 GTTCACTGCCGCATAGGCAGCTTAGAAA # Left flank : ACAGACAGAATTTTTTTAAGTGTCTGCTTGTGTGCGTTTATCTTTTCTGTTTTACATTCTATGTCACACCCACTTTGGGGCATGTTTACATTCATGCCATTTGTTGTTTTTGGGGTGGCATTTCAAGTATGGCGGCAGAGTTCACCAAAAGTAGGGTTCACAATAGCCTTTTTAATTCATGCGCTTCACAATAGTTATGTCCTCTTAGTTGGCATGTTAGGACAGTAAGCTAACAAACGCCTCAAGAGGGACTGTCAACGCGTGGCGTTTCCAGTCCCATTGAGCCGCGGTGGTTGCAGTTGTTGTTTTTGAGTTTAGCGGTAATGCGTTGCCAGCCCCTTAGGCGGGCGTTAACTGGCAATGAAATTACCCATCTTTTTCCGTTGAATTCTAACTTATTGATTTATATTGATAATAAATCGAGTAAAAAATAAAAGGTTATTTTGAGAAATTTGATGTAATTACTATTATTAACAATAAGTTACTGCTAAAGTTTCATA # Right flank : TATTGGTAACTTTGGCATTTTGGATCGGCCAGTTAACAAGGCATTTAAGAGGGACAATCAACGCGTGGCACTTTTGATTCGGGTGAGCATTTGAGGTTAAGGCTGGCTAGTTTGAGCGCAGTTGTTCGCGTTGCTTGCCCCTTAATGCGGCGTTAGGCGATGTTCGTGAAATTAAACAAATCATTCGTTGATTCTTAATCGTGATTCTTTGAATTGTTTCATTTAATCAATAAGTTGTTGGAGTTATCAAGTTAGTAGCCAAAGAAAATATTATCAATTTTCTGTTCTCATAAAAGTTAACGATCGAGTCTGTTCATATTTGATAAGCTTTGTGCTTCTCGTTCTTCGAGTCTTTATTCAGTACTTAATGGTAAAATGGGTTTGCGTTCAGTTTGTCTATAGTCATGATCCGCAGAATCAAGTTGCTTTTGTGGTTGCCAGAGTTTTTTCTACTGGGTCAATGCTGACTTTTCGTGTAAGTTAAATCGTGTTTGGCGATG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCATAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGCATAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [60.0-80.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.51 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 1851724-1852412 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP035697.1 Vibrio cincinnatiensis strain 2409-02 chromosome 1, complete sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 1851724 28 100.0 32 ............................ CTCACGGAGTCTATTCCGTTCTACCACCTTAC 1851784 28 100.0 33 ............................ CTCACGGAGTCTATTCCGTTCTACCACCTTACT 1851845 28 100.0 32 ............................ CACGTGAAGCTTGGGTAATTTAAGTTTAACTT 1851905 28 100.0 32 ............................ GAAAGCTGTGGGCAGGTAGAACGTGGAAGATC 1851965 28 100.0 32 ............................ TTATAAACGGCAAAACCGGCTAGTAGTAGTAA 1852025 28 100.0 32 ............................ GTAATTAAAGCCAAGCACATATTGAATAAATC 1852085 28 100.0 32 ............................ ACAGTGCAAGATCTCGATGTCGAGCTAGCAAC 1852145 28 100.0 32 ............................ AGCACCGGAAAGTTTGGTGGATTAACAATAAG 1852205 28 100.0 32 ............................ GCTAAGGGTGACAAGGAGAATCAAGGCATTAT 1852265 28 100.0 32 ............................ ATGAAACGGCGAGAGCTATCAATCTCTATTAA 1852325 28 100.0 32 ............................ GATGGCTCTGCATATCAACAATGTTGACATGC 1852385 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================= ================== 12 28 100.0 32 GTTCACTGCCGCATAGGCAGCTTAGAAA # Left flank : GATGTAACTTACGTAAGCTTTGTACGCAAGCAGGTGAAATCGCCCGAGCGAATAGAGCGGGATATGCAGCAAAAAGCCGCGCTATGGGCCACAAAATCCGGTAAACCGCTGGTGGAATGCCTAGCCGATTTGCAACAAAGCAAGCCGACAGCCTTGTGCTCTTTGCCGTTTATTTACTTGCATAGCCAGCAAACGAAGCAGCGCTCCCCTGAAAAAAGCAGTAAGTTCCCGCTGTTTATTCAGATGCAGCAACAAAGCACATCACAAGATGGGAGCTTCGATTGCTATGGTTTGAGTAGCAAAGCGAGTGGGCAATCAGCATTGGCTACCGTACCGCACTTTTAAATTGAACGAAAAAGGGTAGTTTTTACCCTTTATTTTTGCTCTTTAAAAATAATTAATAAATACAATGAGTTACAACTGGTGGTTTTTTATAAGGTAAAAATGCAATTTTTATCCTAACTGACTGTTGTAACTTATTTTTATTGATTTATTCTATA # Right flank : AATTAACACCAGAAGAGCTGCAAAACGCAGTAAGTTCACTGCCGTATATTGTGCACCTAAACTTCTAAGCTAGTATCAGTCAGGATAAGACATTAAGAGAATGCCACCCCTTTATATCGCTAGGTTTAGAGACAAAAAAAGACGTCCTAGGACGTCTTTCTTCTGGAATTTGGCTCCCCCTGCGGGACTCGAACCTGCGACATACGGATTAACAGTCCGCCGTTCTACCAACTGAACTAAGGGGGAATGGGTTTGTGCTGCGGATGGTAGCTACTCTGTTCTCATGTGTCAACTTTTGGCATTAAAAAAAAGAGAATTTTTTTGCGTAGAAGGCTTTACTTTTCTGTATCCCTTACCCCATTTGACCTCGATTCAGTTATCCACCAAATTTGTGGATAAGTGTGTTGATGAATGTTGAGTAATTATTTTCTTGATGTTTTTATCTTAGACTCCTTAGAGTGAAATCAGTTAATTTTCTCTATAACTTTATGTTTTTGTTT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCATAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGCATAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [80.0-58.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.51,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //