Array 1 46506-47662 **** Predicted by CRISPRDetect 2.4 *** >NZ_ALLG01000027.1 Streptococcus suis 86-5192 Contig00027, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ===================================== ================== 46506 32 100.0 35 ................................ ACTAAGATAACCACCACCTCTATAAGCACTTGCAG 46573 32 100.0 35 ................................ ATCGTTACCAACGCGCCCCATGATACTATCAAGAA 46640 32 100.0 34 ................................ CGTCTTCTTGTCGTCCGTTTCCGTCAGGGTTTGG 46706 32 100.0 34 ................................ TTTGTTGCCCATGTTTTATCCTCTACCAACTGTG 46772 32 100.0 35 ................................ TATTCGTCACCGAAAAGGTCGGCAAACGGATTGAC 46839 32 100.0 32 ................................ AATGTACCCAGCAACTATGCTGAATAATCCTT 46903 32 100.0 34 ................................ TTGTCTTATCCACAACTAATAGACTGTAGCCATC 46969 32 100.0 35 ................................ CTAAAATAATACAGCCCATCAGCTGAACGGGTAAA 47036 32 100.0 37 ................................ TTCAAAGTTATCTACCACGATTTGACGGGCTTGTACG 47105 32 100.0 34 ................................ AAATTGGTTTAGTACGGTCTTAAATATCTCTAAA 47171 32 100.0 34 ................................ CTATTAAACCTCCAGTTATTAAGCTCAATACTTC 47237 32 100.0 33 ................................ TATAACCATAGAATTTGAAAACTTTAAAATAAC 47302 32 100.0 32 ................................ AATATCTCGGTCAATAGCTATCTTTCTAACTT 47366 32 100.0 34 ................................ CCAATCAGCAATAGCGTAGTGCCATATGGGGCAT 47432 32 100.0 34 ................................ TTGCATCTAACCAGGCCTGATCAACCCCAAAAGC 47498 32 100.0 34 ................................ TTATCAAACAGCCTGCATAGTCAATGAAGCTATG 47564 32 100.0 35 ................................ CCTTGAATTTATTATAACAAAGGAGGTGCCAAAAT 47631 32 100.0 0 ................................ | ========== ====== ====== ====== ================================ ===================================== ================== 18 32 100.0 34 GTCGCACCCTACACGGGTGCGTGGATTGAAAT # Left flank : GCAAAGGCTGTTCGAGGCGAGTTGGACAGTTATCCTCCGTTTATGATTTAGGAGCTATATTATGATGGTATTAGTGACCTATGATGTCAATACAGAGACAGCAGCTGGACGAAAGCGGTTGAGAAAAGTAGCTAAGTTGTGCGTTGACTTTGGTCAACGTGTACAACATTCTGTTTTCGAATGTTCAGTCACTCCAGCAGAATTTGTTGAAGTAAAAAATAGATTGCTGGAAATAATTGATAAGGAACAGGACAGTATCCGCTTTTATTTTCTAGGAAAAAACTGGCAAAATCGTGTGGAAACGATTGGACGAGATACTAGTTATGATCCTGATCAAGGAGTCCTTCTATTATAGATTATCTCTGCGAATCGGACTTACTCATTAAATGTGAGGAGATTCGCGTGAAAAGCATATGAAAAAAAGTGAAAATAGAGTGAATTTATGGTATATTCTATATCTGTAGAAACTTTATTTTTACAAAACAGTGTCAAATAGCGCT # Right flank : AAGGAAGTTGAAATCTTTGAAATTTCTGTTGTGGTCGCACCC # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACCCTACACGGGTGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [7,7] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGCACCCTTCGCGGGTGCGTGGATTGAAAT with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-4.90,-6.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [73.3-41.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.27,0.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 35-3560 **** Predicted by CRISPRDetect 2.4 *** >NZ_ALLG01000028.1 Streptococcus suis 86-5192 Contig00028, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ==================================== ================== 35 32 100.0 33 ................................ AATCGAACCGACACCGTGGGCTAATTGAGAAGC 100 32 100.0 33 ................................ TCTAAACTCAATAATTTAACAACTTTGTAGTTT 165 32 100.0 34 ................................ AGATTATGTGGTTGACTTTAACCAAGCGCTATTA 231 32 100.0 33 ................................ ATAGAAAGAAAGCTAATCGAAAATGGACATATT 296 32 100.0 34 ................................ TAGTTCAATTTCCCAGTTTTCCTGTAATGTGTCT 362 32 100.0 36 ................................ GAAAGTAACAAGAGAGATAAAGATGGGAAGAAACGT 430 32 100.0 33 ................................ TAAACAACACACTAAAGAAAGGCGGGCTATATT 495 32 100.0 34 ................................ TTGTATCAATCTAATCAGAACATATGTGCCATCA 561 32 100.0 34 ................................ AAATTGGTTTAGTACGGTCTTAAATATCTCTAAA 627 32 100.0 34 ................................ CTATTAAACCTCCAGTTATTAAGCTCAATACTTC 693 32 100.0 33 ................................ TATAACCATAGAATTTGAAAACTTTAAAATAAC 758 32 100.0 35 ................................ CCTGATGGAAGAAGAAGAAGTAAAACCCGTGTACG 825 32 100.0 34 ................................ AACTTTCGTTGAAAAATCATTTGCAGTTGACATT 891 32 100.0 34 ................................ ATCAACGGCAAGCCCGTCTAATTGGTTTGTCAAG 957 32 100.0 36 ................................ TACCGTGTGAATGCTATTCTATTGCCTGACCTTGAC 1025 32 100.0 34 ................................ TAAAACTTTTTTCAAAAACTTTTACAAATCACTT 1091 32 100.0 35 ................................ ATCAATGAAGCGCTTGGAACAGCTACAACCTCAAC 1158 32 100.0 33 ................................ AAAGAGTTGGAAAAGCTTGCCAATCAACGGCAA 1223 32 100.0 33 ................................ TCAAGAAACCTAAAGGTGTACAAATTAGTCAAG 1288 32 100.0 35 ................................ TAGTAAAAACGCAACTGAAGATATCAAAGGTGCTG 1355 32 100.0 33 ................................ AAGGAAGTTGAAATCTTTGAAATTTCTGTTGTG 1420 32 100.0 33 ................................ TACCTCCTACGGCATCATTCGTTGGTCTCTTAC 1485 32 100.0 33 ................................ GTCGTAGGTAGACTTAGCTACATAGTTGTTAGC 1550 32 100.0 34 ................................ AAATCAAGTAAAAAGCAATGGAATGATGAGCAAT 1616 32 100.0 34 ................................ AGTGCCGTAAAATACCAACTCCGGGTCATTGTTT 1682 32 100.0 34 ................................ CCAGCAATGCTGAAAGCCTGGCACGGAAATCCTC 1748 32 100.0 34 ................................ ATCCAAATCTATAACTATCACGCAACAAGACGTA 1814 32 100.0 34 ................................ CGTATAGTATGAAAGCCAATCTTGCTCGTAAGGG 1880 32 100.0 34 ................................ TTGCCACACTCGATAACCATATCACGCTGTTGCC 1946 32 100.0 35 ................................ TTCATGCGCTTGAGTCTCGCTTGGGCGAGGCGAAT 2013 32 100.0 35 ................................ CGAGTCAGCCCTTGGTTACTCTGTCTCTGGGTCTT 2080 32 100.0 33 ................................ AGAGAGTATGGGTTGACATTGTACTGTGGTAAG 2145 32 100.0 35 ................................ GCTTAAATATTCGCTTTACATTTTATATTTTACTC 2212 32 100.0 33 ................................ TTCTTATCTTGATACTATTAGAAATAACTCACG 2277 32 100.0 34 ................................ TAAATTATTCTGTTACCATTTCAAAGTGGTCTGT 2343 32 93.8 35 .........C.T.................... TCTGATGGAAGAAGAAGAAGTTAAACCCGTTTATG 2410 32 100.0 35 ................................ TAGTTTAATCTGTCCCAGCTTATCGTCAACGACTT 2477 32 100.0 34 ................................ GTGTATGGTCTGCGAGAAGTATAGACTCAACGTT 2543 32 100.0 34 ................................ TTAATTTCTTTGAATATACCGCCATATCCTAGTT 2609 32 100.0 34 ................................ TACAGAAATAGAACTAGAACGTGGAATTGTGGTC 2675 32 100.0 33 ................................ ACTATATTTCTTTTATTGATTTCGATTTTTCGG 2740 32 93.8 33 ..............................TA GTAGATACGGCGAATATCAACCAATGGAGTACA 2805 32 100.0 36 ................................ TTATTGGCACGTTACCAATACGACAACCACAAACCC 2873 32 100.0 34 ................................ TACCTGACTGTTCGCTATCCTATCACGGACTCAG 2939 32 100.0 34 ................................ TTTTCGGGTACGTTTGCAGCAATCATTAATCCTG 3005 32 100.0 34 ................................ TTATGTTGGATATCATCAAGATAAGCGTCAACGG 3071 32 100.0 34 ................................ CAATCTAGCTTGAATTATGTCTTCTTAGATAAAA 3137 32 100.0 33 ................................ AAGTACGAAAATATCGATAAGCCTACCGACGAG 3202 32 100.0 33 ................................ TTGGACAAGGTGGATAGCCTCAACCACATCCTC 3267 32 100.0 35 ................................ TTCGACAAGCAGGATATTTGGTTACGAGAACACTT 3334 32 100.0 35 ................................ AACCAATGGGGCGGGACTACAACAACAATCAATGT 3401 31 93.8 33 ................-...T........... TTTTCGTCTGTTAGTTCGCGACCGCCAAACATC 3465 32 100.0 33 ................................ TTAGCCAACGATTTCGGCTTAGTCCCATCATGT 3530 31 87.5 0 ........T..................-.T.G | ========== ====== ====== ====== ================================ ==================================== ================== 54 32 99.4 34 GTCGCACCCTACACGGGTGCGTGGATTGAAAT # Left flank : TTTTACACCTTTTATAAAATTAGGATGATCAAAAG # Right flank : GAGTGATACTATAATAATCATTTCCTCAATAAAATCTTTTTTCAGAGAATTCAGAGAGAAATATATGATGCTTCTTCTAATTTTTTTGGTAATATTATCTAATTTTTCTTCCCCTCTTTTTTAAATTTTCTTATAATAACTTACCCACTTCATGCTATAATAGTTATATGAGTTTATAAAAGGAGCATGAAATGTCAAACTTAAAAGAGCAGGTTGGTATTAAGGCGGCGGAATTTGTAACGGATGGTATGGTTGTTGGTCTAGGGACTGGTTCTACTGCCTACTATTTTGTTAAAGAAATTGGCCGTCGGGTTGCGGAGGAGGGGTTACAAATTATTGGTGTAACGACCTCGCATGCTACGGCAGAACATGCTGCGTCCCTTGGGATTCCACTAAAAAATATTGATGAAGTTGAGTATGTAGACTTAACGGTAGATGGGGCTGATGAAGTAGATGGAGCCTTTAATGGAATCAAAGGTGGCGGTGCGGCCTTATTAATG # Questionable array : NO Score: 9.23 # Score Detail : 1:0, 2:3, 3:3, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACCCTACACGGGTGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [7,7] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGCACCCTTCGCGGGTGCGTGGATTGAAAT with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-4.90,-6.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-19] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [45.0-75.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.41,0.64 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //