Array 1 68821-69118 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACJJB010000010.1 Megasphaera elsdenii strain An838 An838_NODE_10_length_100689_cov_74.0831, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ =================================== ================== 68821 32 100.0 35 ................................ CAACAAATCCTTGGTGCTTTTCACGATATCCGTAC 68888 32 100.0 33 ................................ TTATTCCCATATAAAAATTAGGGGGGTATTAAC 68953 32 96.9 35 .............G.................. AATAGCATCTACATTGACCTGCATTAATGACGGAC 69020 32 100.0 35 ................................ CAGACAAATAACGCCATGAGTAACGCCGGCAGTGG 69087 32 96.9 0 .......T........................ | ========== ====== ====== ====== ================================ =================================== ================== 5 32 98.8 35 GTCGCACCCTTCATGGGTGCGTGGATTGAAAT # Left flank : ACTTAAATGACAACTAAGTCGCGTCGATACTGGATTTTATGGTATAATATAATTGTCGTTTTTGTGGATTCCACAGGGACGTGGATTGAAATTGTAACGTTGAATAGTAAGTGAGGTGGAAACCTGCCGTATGCTAACCCTGCGGCAGGCTTTTTCTATAGCTATTAAATTACTATTCAACATTACAGAATTATATATTGATTTTCTATGGTGAAAGAGGTATACTAACCATATAAAATAGATTACCGAATTAAGACAGGGCATCTTGGCTATCCGTATATGTAACCCGGTCATACCGAACTCTGTCAAGACTGATTTATAGAGAGAAAGTGGTGCGAAGCGGCATCACCCATAAAATATATCGGGGTTCCGCGCAGGCCTTACTTTCTATAAAATTAAGCAATATCCAGATAATTAACTCAAAAAATTAGATTGGCTTTCTCTCAGTTCGCAATATAGATGATAGAAAAGCAGGCGATGACTGAGTTAATTTGAAGACT # Right flank : TCACATGGAGGCTCCGCCTTGTACGGATACTTACAAGTCTCACCTTTCATGGGAAAAAAGAATGTTAACTTACTTTAGATTGTTCGGGCAAAATTACTGCGGAAGAGAATCTTCAATGGTGAGAATCCGTATTGGGATGGGGAAATGTTTTTATGGATCAGCAGTCGAATTTTACAATATAATGAGGGGGTGTCTGTTATGGAATACGATGAAGATGATTTTTTGATGATTTCAGGGATATAACATTTTTCATTTTGTCCTCGACAATGGGCCTTGATTCACATCGACCAGGTTTGGGATGAAAACATGAAGACGATGGAAGGCAATATTATCCATAAAAATTGCCATAATCCAGATTTTATAGAGAAGCGTGGTGAAATTCTTATTTCTCGCGGGATTCGGATTGCTTCAAGGACTTTAGGTGTAACTGGACAATGTGATGTGGTGGAATTTCACCGGGATGATGATGGTGGAGGTCGTTTATATGGACATAATGGCTT # Questionable array : NO Score: 9.00 # Score Detail : 1:0, 2:3, 3:3, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACCCTTCATGGGTGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: R [6,9] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGCACCCTTCGCGGGTGCGTGGATTGAAAT with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-5.50,-4.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [61.7-53.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.78,0.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 19412-19917 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACJJB010000031.1 Megasphaera elsdenii strain An838 An838_NODE_31_length_20031_cov_79.3291, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ======================================== ================== 19412 32 100.0 35 ................................ GCCAATGTCACCTGGGATGTATTGCGCAGGAATCT 19479 32 100.0 36 ................................ CTTGCCATGGCGCGAGAAGTCGAGCGTGATTTCACG 19547 32 100.0 36 ................................ GCCGACTGGCTCCACAACTTCCCGAACTCGATGGTA 19615 32 100.0 35 ................................ AAGAGTGTTAGTGGAGAAATCCACACTAAGGAAAA 19682 32 100.0 34 ................................ TTTCTCTGGCGGTAGAAAGAACGATACCAAGTAA 19748 32 100.0 34 ................................ AAGACCGCCCTTTGGATTGCCGAAAGCCAAATGA 19814 32 100.0 40 ................................ AGGCCGTCCAATTTGTTGCTGTCGCTGCCCAGCGGCTCAA 19886 32 100.0 0 ................................ | ========== ====== ====== ====== ================================ ======================================== ================== 8 32 100.0 36 GTCGCACCCTTCGCGGGTGCGTGGATTGAAAT # Left flank : TAGACGGCTATGTATCAGCCAACCTGGCACGGAAAGTGACCGGTTTCAGTGAAGACGATTTACAGTATTTATGGAAAGCCATCATTAATATGTTCGAATACGACCATTCCGCTGCCAGAGGGAATATGGCTGTGCGCGAACTCATCGTATTCAAACACGATAGTGAATTGGGAAATGCTCCAGCATATAAACTTTTTGATACTGTTCACGTCCAGAAAAAAGAAGGCGTCGTCGCGCCCAGAAACTATACGGACTATGACGTAACCGTAGATGAAAGCAAAATCCCGGAACACGTTACGTATACCCGGATGATTTAAACGTAGGAAAGAGGGGGTGCGAAGCCATATCACACATAAAATATATCAGAGCTTCGCACCCGGCTTGATTTCTATAAAAATAAGCAATACCCGGAGAATTGACTCAAAAATTGAACTGCTATTCAATCAGTTCGCAATATGATTGATGAGAGAGCAGATAGTAACTGAGCCAATTTGAAGGCA # Right flank : ATGGTTGACCTTATCCATGTACTGCTCCAGGCGGAGTTGGTGCTAGCATATAAATAGGACAAGTCAAACTGAGGTTTTCCATAAAGTGATACAATAAAAGTATATATAGGGGGC # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACCCTTCGCGGGTGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGCACCCTTCGCGGGTGCGTGGATTGAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.10,-8.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [60.0-53.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9,1.15 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 743-172 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACJJB010000055.1 Megasphaera elsdenii strain An838 An838_NODE_55_length_1574_cov_165.216, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ====================================== ================== 742 32 100.0 35 ................................ TTGCAAGCCTTTGCCATTCAGCATGGCGTTGACCC 675 32 100.0 36 ................................ AAGCATGGGACGCTTTTTGTCCCACCTAGTCTCTGT 607 32 100.0 34 ................................ TCCTTCCCGTCAGGTGCGAGTCGTCCTTATGCCT 541 32 100.0 35 ................................ CGAAACGTGTATCACTATTGGAGCATTGGCAAAGC 474 32 100.0 34 ................................ CTGTGTTCCACCAAGCCGTATGGATAGCTACTGT 408 32 100.0 36 ................................ CGTTATAATGAAACTGAACATCAAAGGAAACGTTCC 340 32 96.9 34 ............A................... CGACAGGATGAGCAGTTGCCCTTTCGCCGTCGTC 274 32 90.6 38 ............A.................GA TGCCAGCTCATCCGCGATGCCGACAAAATCGATATTTT 204 32 96.9 0 ............A................... | G [174] ========== ====== ====== ====== ================================ ====================================== ================== 9 32 98.3 35 GTCGCACCCTTCGCGGGTGCGTGGATTGAAAT # Left flank : GCCAGTATCATGGATTTATTTTCTCGAAAAATCATTGCCTGGAATTTATCCCGGAAGTTGGATGCATCTGGCATTATTAGGATGCTTCAAACGGCAAAGCAAACCAGGAATCCAGGCCGTCTGTTAGTAATTCACACTGACCGCGGTTGTCAATATCTTTCGCAATCCTATATCAAGGAAACCGCACAGATGTGCCGCAGCTATTCGAAGAAAGGCTATCCATGGGATAATGCCTGCATAGAATCATTCCATGCCTTGATTAAGCGAGAATGGCTGAATCGATTTAAGATTGAAAATTATCAACAAGCCTATATGCTGGTGTTTGAATACATTAACACGTTTTATAATACCGTTCGAATTCACAGTCACTGTAACTATATGTCACCCAATGACTATGAGAAATTATATGCAAACTACAAGAAAAAGACAGCTTTGATTGCTGGATAACTGATTGATAAAAACCTCAATTTAACTTGTACTCAAACTTGACATAGGACCAA # Right flank : TAAGGTAAAATATATTTCGCAAATTTAATTTCATAAAAAATAGACATAGTCTATTGCCGCTAGTACAATTAAGTTACCACACAAAATTCGTAAGGAGGCAATAGACCATGTCTGGTAATATTATACAACTTAATGAGGATCTTATAAAGAATAATTTAAAGGATCTTGTACG # Questionable array : NO Score: 9.17 # Score Detail : 1:0, 2:3, 3:3, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACCCTTCGCGGGTGCGTGGATTGAAAT # Alternate repeat : GTCGCACCCTTCACGGGTGCGTGGATTGAAAT # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: F [8,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCACCCTTCGCGGGTGCGTGGATTGAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-5.60,-6.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [75.0-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,9.78 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 1058-892 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACJJB010000061.1 Megasphaera elsdenii strain An838 An838_NODE_61_length_1135_cov_84.0038, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ =================================== ================== 1057 32 93.8 35 ....C......................A.... AACTTGTACCTGTACACGGATTGCGAGGCGACATC 990 32 100.0 35 ................................ AATAGTGTACAATACGGTTGAAAAAAGAGTTTTTT 923 32 90.6 0 ....C.........................CG | ========== ====== ====== ====== ================================ =================================== ================== 3 32 94.8 36 GTCGTACCCTTCACGGGTGCGTGGATTGAAAT # Left flank : GCCCCCTATATATACTTTTATTGTATCACTTTATGGAAAACCTCAGTTTGACTTGTCCTATTTATATGCTAGCACCA # Right flank : CTTATCCTGTTTGTCATCGGAACGGCCTTTTTATCGTAGTTTCGCCAGAAGACTCCTTCCTCTTAGGTAGGGGATGAATGGCGATGGATTTCGCAGGTTCGATGCCTGCGAAATCCACCCTATGTCTTTTCCATCTTAGCCTTTTCACTTCGTCTACGGTATAATGGTAGATAACAGAGGAGGTGAATCCTAGATGTACTTGACGCAATCAAATGTCATCCGCGGCTTGTCGAAACAAGACTATACGATGCTCCGGGAAATGTGCCAATGCAGCAATAACCTGTACAATGTAGCGGTCTATACGATTCGGCAGCATTACTTCGATACCCAGCAATTCTTGCGGTACGAAAAAAATTACCCCATCTGCAAGAAAAATGAAAACTATGGCTTGTTGCAGGCCGGTGTCGCCCAGCAGATATTGAAGATGGCCGACCGCAGTTTTCGTTCTTTTTTCGGGCTTTTGCAGAAAGTCAGGTCAGGTGACTATGGTTCAAAGGATG # Questionable array : NO Score: 8.41 # Score Detail : 1:0, 2:3, 3:3, 4:0.74, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGTACCCTTCACGGGTGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [7,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCACCCTTCGCGGGTGCGTGGATTGAAAT with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-5.50,-6.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [53.3-65.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.78,5.14 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 53490-53893 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACJJB010000017.1 Megasphaera elsdenii strain An838 An838_NODE_17_length_54175_cov_82.6713, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =================================== ======================================== ================== 53490 35 100.0 39 ................................... TGAAGTCTTCAAAGATTTCCCAATAATCTTTATTGATCA 53564 35 100.0 39 ................................... TTCACTTCCTTTTGGGTATTCAAACATCTGATTCTTATA 53638 35 100.0 40 ................................... TACTTCTTCAATATCTTCAATCGGCATCTTTAACCCTGCA 53713 35 100.0 38 ................................... AATTTTCTGATCTTCTGGATCGGGAATAGGCGATGTAA 53786 35 100.0 38 ................................... ACAATCATATTTTTGTTTACTCAACAAAAATCTAGTAT 53859 35 100.0 0 ................................... | ========== ====== ====== ====== =================================== ======================================== ================== 6 35 100.0 39 GTGTTAATGGCCTTACCCCAACAGGGGACGGAAAC # Left flank : ATGTATGATGCTAAGTGATTTTTTATATCATGCACAACATGGCTGGTACGTATTCCAGTCGGTCTATGAGAATGGCTGGAATAGCGGATCCTGGCCGGTACAAGGATTATTGATTTTTGTAAGTCTTAGCTTCTTAGGGACGACTGTTGGGGTCCTCTTTCCCCAACAGGTTCAATCTGAGAAGCAGCATCTTTGGCGACAGGTTGTTGTTAACGTAATCGTAAATTGTTCTATTATTTTTGGTATGGCTAGCGTTTACGGGCTATAAGTGAGAAGAAAAATGATAGGGAAAAGTCAGCTCAAGTCTGTTGGGCTGGCTTTTTTACGGCCATCATGATATAATAAAAACAGCTTAGAAGGAGGCAAATCTGCCCCGCTAAGATGGTTGTGCGGGATACAAGCGATTATGAGAACATTCTCACGGCCATTAACCGAAAAAAGACGACTCCCCCGCAAACCGACTTATCAGGCCAGTAAACAAGCGGCTTCCCAAGGACGCT # Right flank : AAGGAGGTGACAATAATGGGGGATATTGTTGTTTTAGGTTAATGAAAACGGTGGGCTAGGGGAGATTCTCCTGGCCTATTTGTCTTTACAGGACGTCCCCTGCGAAATCGCATATAGGCGATGGAACAAAAAAGAACTGCCGCATGATTTTAAAATTCATGCGGCAGTTCTTTTTTTATGCCAAAATTGGCAATATATATAGGATCAGCAGTTTACAACTTTTTGAACAAATAAATATCGCGTAACCACACTTTGAAGTATAATGAATCTGCTACAACACAC # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTAATGGCCTTACCCCAACAGGGGACGGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [10,6] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-6.90,-7.10] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [41.7-58.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.37,0.27 Confidence: LOW] # Array family : NA //