Array 1 3495232-3494228 		**** Predicted by CRISPRDetect 2.4 *** 
>NZ_CP065358.1 Kosakonia oryzae strain IAC-BECa90 chromosome, complete genome		Array_Orientation: Reverse

  Position	Repeat	   %id	Spacer	Repeat_Sequence             	Spacer_Sequence                              	Insertion/Deletion
==========	======	======	======	============================	=============================================	==================
   3495231	    28	 100.0	    32	............................	ACCAACTCCGCCAAAAGAGAAATAATTATGGC             	
   3495171	    28	 100.0	    32	............................	CACCAGTTGCCGCCGCCGCCGCCAATTGTTGT             	
   3495111	    28	 100.0	    32	............................	AAATCTGACGGCGAACAACTGCGAGGCGCATA             	
   3495051	    28	 100.0	    33	............................	ACGTTATTTCAATAAATTGCTCCAAGGCTCTGA            	
   3494990	    28	 100.0	    32	............................	AGTAATTGCCCGGTAGTTGTATCAGGCTCAAT             	
   3494930	    28	 100.0	    32	............................	TCGCTTCAGCAACGCAACGGACAGACCATTCA             	
   3494870	    28	 100.0	    32	............................	TATTCAACAGGTAATTTTAAACAGCCGCTATG             	
   3494810	    28	 100.0	    33	............................	GCGATGCAGACGCGCGTGAAAGACATGCGTAAA            	
   3494749	    28	 100.0	    45	............................	CGGAGCCGCCTTTTGGATTAACCTTTTGGATTAAGAAAGGAGATT	
   3494676	    28	 100.0	    32	............................	CGAAGGAGCTGAGAGTGCTCGTGTTGGTTTCG             	
   3494616	    28	 100.0	    32	............................	AGTCGAGGTCGTCGCCGTACGTCTTCTGCAAC             	
   3494556	    28	 100.0	    32	............................	CATCCATCGCGCCGCATGAAGTGCAATAGCTC             	
   3494496	    28	 100.0	    33	............................	CATTTCTAGGGTAATTGCGGTACAAGATGAACC            	
   3494435	    28	 100.0	    32	............................	TGGCCCAGCGACGGACAACGTGATCGAGGTTG             	
   3494375	    28	 100.0	    32	............................	CCGCGAGATTATGCAGGAAGCCGCAAAGCAGG             	
   3494315	    28	 100.0	    32	............................	TGGAAGATTCTTGAGTGGCGGTTTTGATGTTG             	
   3494255	    28	  85.7	     0	........................AGGT	|                                            	
==========	======	======	======	============================	=============================================	==================
        17	    28	  99.2	    33	GTTCACTGCCGTACAGGCAGCTTAGAAA	                                             	       

# Left flank :   TGACGCTGAATCAGGAAAAAGATGTGCTGGAGTATGACTTCCAGAGTGCCCAGAAGCACAAACCGGAAACCGCCCATTAATCTCTGTCATTAACTCACAAAAACCGGGTCACTGAACCCGGTTTTTTTATGTCTGCGATTTGTCTATCAGATAAGCAAGCACAGCGTTTCGGTAATCCTTTCCGGTATTGTCAGGACAGGGAGCCTGTTCTGCTAACAAATGGATAAAGCCGTTCCCTGCTCTTATTCTCCCGGGTTTGCTGTGTACGGAAAAATAATGCGACCTGAAGCTCTAAAACAACGCGAGTTTATCTGCACAAAAATGTCATGAGTCTGATCGTTCTCCCGGGGATGAATGCAGCCTCCTCAGAACCCTTTTTTATATTGGATTTATAATCTGTTAATTTTATTCATCTTTTTATGATGATATAAAAAAAGGTAAAATCCTCATAAAGTCATTATCTTTAATAAAAAACAACGAGATGGTATTGTTTTTATTCA
# Right flank :  CGTCACTATCGGACAGGAAACGGTTTGCTAACGTTTGCAACTGTAGAGAAGCGGAAAATAACAGGCCGATAAAAACGACCGATAAAAGCTAATTAAAGGCTGGTTTAGCAACGCTAGTATTTCTGTTGCGCAGAAAAACAAAAGGCCGGGTTTTTACCCGGCCTTTAATATCAGGTGCACTTAGTTGTGCTTGCGGAAGATCTTAGCGGCTACGGAAGACAATGCGGCCTTTGCTCAGGTCGTACGGGGTCAGTTCCACAGTCACTTTATCGCCCGTCAGAATACGGATGTAGTTTTTACGCATTTTACCGGAGATATGCGCAGTGACGACGTGACCGTTTTCCAGTTCTACGCGGAACATCGTATTAGGTAACGTTTCAAGAACGGTACCCTGCATTTCAATATTGTCTTCTTTGGCCATCTAATCCTCGGGGGTATCACTACCATAATTTTTGAACCGGCAAGATAATGCCGAAGTTCGTGTGTTAAGTAAAGATTTG

# Questionable array : NO	 Score: 6.22
# 	Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1,
# 	Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats),
# Primary repeat :     GTTCACTGCCGTACAGGCAGCTTAGAAA
# Alternate repeat :   NA

# Directional analysis summary from each method:
# 	Motif ATTGAAA(N) match prediction:         NA Score: 0/4.5
# 	A,T distribution in repeat prediction:     R [6,8] Score: 0.37/0.37
# 	Reference repeat match prediction:         R [matched GTTCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5
# 	Secondary Structural analysis prediction:  R [-7.70,-8.00] Score: 0.37/0.37
# 	Array degeneracy analysis prediction:      R [4-0] Score: 0.41/0.41
# 	AT richness analysis in flanks prediction: R [55.0-76.7]%AT Score: 0.27/0.27
# 	Longer leader analysis prediction:         NA 
# 	----------------------------------------------------------------------------
# 	Final direction:         R [0,5.92   Confidence: HIGH] 

# Array family : I-F [Matched known repeat from this family],   
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