Array 1 540212-539443 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACXAG020000002.1 Hazenella sp. IB182353 contig_2, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ======================================== ================== 540211 30 100.0 39 .............................. AAACGTGGCAACGCTTATCTCAAATTCCAGCTGGTGGAA 540142 30 100.0 40 .............................. ACCTTCTCCAATCTTGAAAAAATCGTGTCTCGATGTCCAG 540072 30 100.0 36 .............................. CCAAACAGTCACTGAGACAATGAAAGCACTCCAAGA 540006 30 100.0 36 .............................. TGGCATGGAAGTTAGCACTTGATAATGGACGTTCAA 539940 30 100.0 38 .............................. CTTTTTTTGTCTTTGATAACATCTTTGATTGTTTTGGT 539872 30 100.0 38 .............................. TGAGGGTAACGACAACATGGGAATACATCTACGTATGA 539804 30 100.0 37 .............................. ATTATACTATAAAAGCCACCGATGCCAACGGTGGCTC 539737 30 100.0 39 .............................. GGTTCAAAGGCGTATAGATCTATAGTTCCATCTTTATTA 539668 30 100.0 36 .............................. ACCAGGTGGTGATGCCGATTGGTACGAAGTCAACAG 539602 30 100.0 36 .............................. ATCGCTCACTATACCCGATGTCATGCAAGTACGCCA 539536 30 100.0 35 .............................. TCGAAACACAAGGGATCGCCCCAAACACTAGCACC 539471 29 86.7 0 .................A.A.....-..G. | ========== ====== ====== ====== ============================== ======================================== ================== 12 30 98.9 37 GTTTCCATCGTACCTATGAGGATTTGAAAC # Left flank : AGACAGGTTGATGTTCAAATCTGTCTATCCTTTGCTAGAGCATGAGTGAAAAGTATTCCAAGACGTCACTTCATCTATCGGTATCCTATTTTTGGGAAACCAGCTTGTGTCGCTTTTCCGAGTGCAATTAACAGAACAGGTTCATAGCTAGCTGGTACATGAAATGCTTCCACAAATTGAGAAGCATCATATCCCCCATCTATCATTCCAATTCGGATTAAATCGGTGGGGAATAAATTGCCATATGTCTTATAAACCTGATTGACATAACGGTTTTTTTCCTCTATCGTATGATTACCTTATGGTGCAAAAAATAAGGTAAAGATATCCATAGATGTCGTCGACCTCCAATAGCGTATTAAACCCCGGAGATCGACGACAACACCTCACCACCACAACTCCGCAATATCCCTAGCCTAAGCAATATTCACCCGAAAAAGAGTAGATTATTTGTTGAATTTGGTTAATAATAGATATAAGGCATACTCCTACTTTTTGGG # Right flank : TTAAATTATAAAGAAACCCCGTATGACATCTAGTTCTAGAACTAGATGTCATACGGGGTTATCTTATTTTCACTTCCACTTTCGTTTAAAGCGACCATAGCCAACCGCTGTTTTTGCACCTGCCCCGATTTCGATGAGGGCATCTTTTAACCATGCGCTCACATGGCGTACATCGGCATGAGCGTTATCGTTTTGATATCCCGGACGTGGCGCAAATGCGAAGCAAAAGGTTTGTCCTGCCGCAACCGTTAAGAAGGGAATTGGAATGGGATCATACCATTCGACAGCTTTATTTTGGTTTGGGTTATCATAGTATGGAGAGAAGTGCGGGGTCATGATATCTGCTTCTAATTCCACAGCACCCTCAGGAAGTGCATCAAAAAAGATCATGCTTCCCGTTTGTTGCGCTTCTCCTTCTGGTTCCTGTTTGGGTGCTGAACCGAAGATTCGAAGGAATATCTCCTCTGCTTCAATTTTCTCTTTTAACGCTAATTCCTCCA # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCCATCGTACCTATGAGGATTTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:60.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.20,-0.60] Score: 0/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [65.0-71.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.41 Confidence: MEDIUM] # Array family : NA // Array 2 571158-571384 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACXAG020000002.1 Hazenella sp. IB182353 contig_2, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================== =================================== ================== 571158 31 100.0 34 ............................... TCTCTTTCTTCTGCTCATCAGATAAAGTAAAACC 571223 31 100.0 34 ............................... CTTTACTACCTTCTGTATCGACAACCGCAGTCAA 571288 31 96.8 35 ..............................T GGTGCATAATGATTACTTGGTTCTACAATACGGAA 571354 31 93.5 0 ......................T....C... | ========== ====== ====== ====== =============================== =================================== ================== 4 31 97.6 35 GTTGAACATTAACATAGGATGTATTTAAACC # Left flank : TTCCAACCTTTTGACGAAAGGAAGAAGATGTGATGGCGAATAAGTTGAATTGTAACTATGCATTTGTATTTTATGACATAAATGAAAAAAGAGTCCAAAAAATATTTAAAATATGCAAGAAGTACCTTGTCCATTACCAAAATTCGGTCTTTCGTGGAACGATCACCTCTTCCAAAATCTTAAAGTTAAAAAAAGAAATTGAGACAGTGATCAATCCAGAGGAAGACTTTGTGTCTATCATCACCATGATGAATGAACACACATTCTCTGAAATTGCGTTAGGAACATCCCAAAAAACAGATGGAGAAGCTTTATTACTCTAAATTTATCCCAACCTCATCCAAACCAAAAACGTTTCAATCTGTTGATATAAAAGGGTTTAAGGCGGTTTTTATTTCATTCTCCAATTTTGAGAAGAGGTTGGGATAAAATCGTCAAACCCCTTGCCAATTCGGCCTTAATCCAGTATTGTAGAAATTAAGAACCCAGTGTTTACCGGG # Right flank : CTCATACGAGTACCAGGTTTAAATAACGAATAGCATCTATAAAATCCCTTCATTTCTCTATATGAGAGTGGGGGATTTTTCTCTTTTTCATGCTACTTCCAATCTAGTCTGTTTTTGTTTTTTGGCGATGATGCTACCTAGCAGATGCTGGTAGAAATGCTTTCTGTGGTATACATCGGGTATGTCTTGGTAATAAAAATTAATAGATGACTATACTATGTAATATATGAAATGCATAAAGTGAAGAGAAGGAACATTTAAGATTGTATAGCGGACAGCAGATTGGAGGCACTTACATGGTTCTTAAGCGTCAAGATGCATGGACACCAGAGGATGATATGATACTAGCTGAAGTGACGCTTCGTCAGATTAGGGAGGGCGGTACCCAACTCGCAGCTTTTGAGGAAGTTGCTCAAAAACTGGGCAGAACACCTGCTGCGTGTGGTTTTCGCTGGAATAGTACGGTCCGAAAAAACTTTGAAGATGCGATTAAAATTGCT # Questionable array : NO Score: 5.74 # Score Detail : 1:0, 2:3, 3:0, 4:0.88, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGAACATTAACATAGGATGTATTTAAACC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:70.97%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-1.60,0.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [55.0-68.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0.27 Confidence: MEDIUM] # Array family : NA // Array 1 588111-588272 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACXAG020000001.1 Hazenella sp. IB182353 contig_1, whole genome shotgun sequence Array_Orientation: Unconfirmed Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ==================================== ================== 588111 30 100.0 36 .............................. AAATTACGCCAGTTGACTATTTTTAGAGGATTCTTA 588177 30 100.0 36 .............................. CTTCTTCCTGTAATAAGCTAGGGTCTAATTCAGTCA 588243 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ==================================== ================== 3 30 100.0 36 GTTTAAATACATCCTATGTTACTGTTCAAC # Left flank : TTTAGAGTTGCTGACTTTATTAGACGATACACCTATCATCACAGATGATTTTCCATATTTAAGCGAATGGAACAAAAGGAAAAGTTAACTCAAAGAATAATCCTCTTGCTTTCAAGCGTGTTGATTCAATACGCTTGAATCTTACTTGAACGAATGAAGTAGCTTACTCTAAGTGTGCAATATCAGATTATTTAGAATTGAGTCGCTTCTATTTGGGTAAATGTTTGACATGCAGATCTACACCCATTCCTTTCCCTGTTGCTTGCATTACAGGTTCAGCTTCACAAGTGAAAACAGCATCGTACTTACCATTCTTGCGAATGATGGTTGATATTTTGACCTTTCCTTCCATATGTCTATGATATTTAATACCAATATTCTCGTTCTGAGATCGTTTCACATATTTCCCATTAAGTGTGCCCTCGATAAAGTCACACTTTAGTTGCGTGTAGAAATTTTCATAAAAATGAACGCTTCTACGGTATGATAATTCCACTTCT # Right flank : CCCCGATCAACACTAGGTTCTTGATTTCTATCATATCCCATAATGTTAGGAATCACAAGGGTTTGAGGGGGTTTATCCCAACCTACTGAGCTCTATTTTGATACAGTTGATAGAAGGAAGAAAAGATCAGTCATAGCAAGGGTTACAGCCGATTTGGTCGAAAATGAGGTTGGGATAAAATCGTTAAGGGGGAAGACGAAATCAAGTGACAGTTGCACCCAATACCTAGTTCAGGAGTAGATCGACATAGGTTAATCTCTACTCCTACTATGCATCCTTTTCACTTTAACAAACTCAGAATCGTAGAAACCGTTTGACCTAATGTCGATGTTCCCTGAAGTATTCCACTTATTTTTTCTAACTCTTGATTTAGTTTGTTAAATGCATTTTTGAAACGATTTCCTTTTGTGATGTGCTCTTGGGACTCTTTGGCTGTCTGCATGAGTTTTATTTTTGTCTCATCTGATAGGTCTGATGAGTGGATTAATTGTGAAATAAAT # Questionable array : NO Score: 5.67 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTAAATACATCCTATGTTACTGTTCAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:70.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [66.7-60.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: NA [0,0 Confidence: NA] # Array family : NA // Array 1 38163-37404 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACXAG020000011.1 Hazenella sp. IB182353 contig_11, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ========================================= ================== 38162 30 96.7 37 ................G............. GTAATCGTCTTAACCACTTTGTATTCGAAAGTCTCAA 38095 30 100.0 34 .............................. TCATTTTTCGTATCTCGATTTCCGCACGCTGCTC 38031 30 100.0 35 .............................. TTTCTTGTAACTCTTTAAGTGTAAACATTTAAAAC 37966 30 96.7 41 ...............T.............. CCGTAGAAGTCGGTTCCGTTTTCGGTGTCAATGACCGCCTT 37895 30 100.0 36 .............................. ACAGATTGGAGATAACGATTGGGCGGAAAACATCGC 37829 30 100.0 36 .............................. ATTACCTGGCGTTGTCCAGCTCGGTTTATGATGATT 37763 30 93.3 36 ...............AG............. AAGTAGCCGCCGCACTTATCTGTCACGAAAAAGCGC 37697 30 96.7 36 ...............T.............. CTCATTTTGTAAAACGTTTTGATGTAGCTAGAGGTG 37631 30 96.7 36 ................G............. AAGTAGTCAAAATGTTTCTGGTTTATGCGATACCCT 37565 30 100.0 36 .............................. AGAGCAACCGCGTACTGCTCGTAAGCATAGGCATTA 37499 30 100.0 36 .............................. TTGTTGTCTAACATCCCGTTTCTAAGTGTTTGTAAA 37433 30 96.7 0 ............................G. | ========== ====== ====== ====== ============================== ========================================= ================== 12 30 98.1 36 GTTGAACATTAACATGAGATGTATTTAAAC # Left flank : AAATGAAAAGAAGTTCGTTGAACATTAACATGAGATGTATTTAAACTCCCATGACTTGATTTGCAAGGGTTCCATCTTTGGTTGAACATTAACATAGGATGTATTTAAACCCAAAAAGCGCACGACAAAAAAACGAAATAATAAACGTTGAACATTAACATAGGATGTATTTAAGCTGGGAAAGTAACAACCCGATCCTCACTGATGCAGTGGGGATTTTCTATACCAAAAAACCCCACCGTTTGGCAGGGTTACAATATCCTGCTAAAGCTTTCGGTTCATGCTTCGTGAGAACACCATTTACTTCTTACTACATATCAGTTTTATCCCAACCACATTTTCCATCCAATCGATCAAATACCTTGATATGAATGGGTTTAACGCTACTTTCCTTATCATACCCTGAATTACAGTAATAGATTGGGATAAAACCCACAAATCCCTTGATGTTACTATCGTTATGAGATATCCTAGTAATCAAGAATCTAGTGTTTATCGGG # Right flank : TGGGAAAGTAACAACCCGATCCTCACTGATGCAGTGGGGATTTTCTATACCAAAAAACCCCACTGTTTGGCAGGGTTACAACATCTTGCTATAGCTTTCGGTTCATGCTTCGTGAGAACACCACTTACTTCTTATTACATATCAGTTTTATCCCAACCACACTTTCCATCCAATCGATCGAGTCCCTTGATATGACTGGGTTTAACGCTACTTTCCTTATCACACCCTGAATTACAGTAATAGATTGGGATAAAACACATAAATCCCTTGATGTTACTATCGTTATGAGATATCCTAGTAATCAAGAATCCAGTGTTTATCGGGGTTGAACATTAACATGGGATGTATTTAAACATGGTGTCACTTTCTAGGAAATCGATAAACTTGGATGTTGAACATTAACATGGGATGTATTTAAACTTCGAGTAGTAGATGATATAGTTGCAAAATTGAAGAGTTGAACATTAACATGAGATGTATTTAAGCAGCGAAAGCAACAA # Questionable array : NO Score: 6.04 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.88, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGAACATTAACATGAGATGTATTTAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:73.33%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [0.00,-1.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [2-2] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [55.0-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.37 Confidence: MEDIUM] # Array family : NA // Array 2 39438-38487 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACXAG020000011.1 Hazenella sp. IB182353 contig_11, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ===================================== ================== 39437 30 96.7 35 ................G............. ATGTGTACCACTGAACGATTAAAGGCATAAGGAGA 39372 30 100.0 36 .............................. AGGTTCGGAGCAAGTAAAATTGCGCTTTGCCCCTCG 39306 30 100.0 36 .............................. TGGTTCCGATAGAAAGCCGTATTGAAAAGTACCGTA 39240 30 100.0 36 .............................. TTGAATTCTTCTCGGACTACTTTTTTTAACTGATTT 39174 30 96.7 36 ................G............. CGATGTAATCCTTCATGAAGCGACCGGCACCGCCGA 39108 30 100.0 36 .............................. TATTTACCTGCTGGGCCTTTTACCCAAGAATCTTTC 39042 30 100.0 36 .............................. ATGTACTTTTGATCTCCTGTAGGACCAAGATAGATT 38976 30 100.0 36 .............................. ATGTACTTTTGATCTCCTGTAGGACCAAGATAGATT 38910 30 93.3 35 ...............AG............. TCTATTAGCCGGCAAATATTCATTTCTCGTTCTTG 38845 30 93.3 37 ...............AG............. AGTTGGCTACCCAGTGCATATGTGCGTGATGACTTTC 38778 30 93.3 36 ...............AG............. CCGATTGTGGCAAGGACATTGTCAAGCATGAGAATG 38712 30 93.3 36 ...............AG............. TTTTTAGATATGGCAGTCTCAAATGAAAAGAAGTTC 38646 30 100.0 34 .............................. TCCCATGACTTGATTTGCAAGGGTTCCATCTTTG 38582 30 93.3 36 ...............AG............. CCAAAAAGCGCACGACAAAAAAACGAAATAATAAAC 38516 30 90.0 0 ...............AG...........G. | ========== ====== ====== ====== ============================== ===================================== ================== 15 30 96.7 36 GTTGAACATTAACATGAGATGTATTTAAAC # Left flank : AACTGGATCAATCATTATTTTGCTGATTTAATTTTATGTGTAAATTACAATATCATTAAACTTTTCTAATTTAGTAGTTCTGTCAATTAGATACTTGTTCACTCTAGGTGGTTTTAACCTATCTCTACTAGTATATTCAAATTTATCACTTTTGAGATATTCTCTTGTTAATTCTAAATCAAAGTATTCCATATTAACCTCCTAAAATTCTTCCATACAACTACATCAAAGAACCCCACCGTTTGGCAGGGTTACAACATCTTGCTAGAGCTTTCGGTTCATGCTTCGTGAGAACACCATTTACTTCTTATTACATATCAGTTTTATCCCAACCACATTTTCCATCCAATCGATCAAACACCTTGATATGACTGGGTTTAACGCTACTTTCCTTATCACACCCTGAATTACAGTAATAGATTGGGATAAAACACACAAATCCCTTGATGTTACTATCATTATGAGATATCCTAGTAATCAAGAATCCAGTGTTTATCGGG # Right flank : TGGGAAAGTAACAACCCGATCCTCACTGATGCAGTGGGGATTTTCTATACCAAAAAACCCCACCGTTTGGCAGGGTTACAATATCCTGCTAAAGCTTTCGGTTCATGCTTCGTGAGAACACCATTTACTTCTTACTACATATCAGTTTTATCCCAACCACATTTTCCATCCAATCGATCAAATACCTTGATATGAATGGGTTTAACGCTACTTTCCTTATCATACCCTGAATTACAGTAATAGATTGGGATAAAACCCACAAATCCCTTGATGTTACTATCGTTATGAGATATCCTAGTAATCAAGAATCTAGTGTTTATCGGGGTTGAACATTAACATGGGATGTATTTAAACGTAATCGTCTTAACCACTTTGTATTCGAAAGTCTCAAGTTGAACATTAACATGAGATGTATTTAAACTCATTTTTCGTATCTCGATTTCCGCACGCTGCTCGTTGAACATTAACATGAGATGTATTTAAACTTTCTTGTAACTCTT # Questionable array : NO Score: 5.86 # Score Detail : 1:0, 2:3, 3:0, 4:0.84, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.76, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGAACATTAACATGAGATGTATTTAAAC # Alternate repeat : GTTGAACATTAACATAGGATGTATTTAAAC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:73.33%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [0.00,-1.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [55.0-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.78 Confidence: HIGH] # Array family : NA // Array 1 152835-156113 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACXAG020000005.1 Hazenella sp. IB182353 contig_5, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ============================================ ================== 152835 37 100.0 37 ..................................... AGTTTTTTTGACTCAACAATCCAGAAAACCCCTTACA 152909 37 100.0 39 ..................................... GCCAGAACTACGTGACATAACCAGAGTGGTCACCTTGCG 152985 37 100.0 37 ..................................... GTACTGTTTTTTCTAGGGATGGCTTCAACGAGGCAAC 153059 37 100.0 37 ..................................... ATATTGGACTAGAGGACTTTTGAGACATTTGGATGAT 153133 37 100.0 38 ..................................... TTAAGTGACTATGGAAATGCCGAACGATTAATCTTACT 153208 37 100.0 35 ..................................... TCTGCATGGGCTTTCTGATTGCGACAGCTCATTTG 153280 37 100.0 36 ..................................... ATCGCCAGTGCTGAACCCTCAGTTAAGTTTGTTAAA 153353 37 100.0 39 ..................................... TATTCAGCCTTTTAATTGACTCTTGGACGTCTGTATCTA 153429 37 100.0 35 ..................................... AGCAACTCATCACTTTAACTGGTTGGGATGCAAAA 153501 37 100.0 35 ..................................... CTGAAAGTGTTTTACAATCAATGTAGTAATTCGTC 153573 37 100.0 35 ..................................... GGCACTTTTTTTTATGCTATTCCCTTGACTTAACT 153645 37 100.0 37 ..................................... AGACGTGTGGAGAAGCGAATCCTTTGAGGCGACAAAA 153719 37 100.0 36 ..................................... CTGCTAGCTTTTTTCCGGGATTCATAATGAGTTTTT 153792 37 100.0 36 ..................................... TAAAGCGTCCTACTACACTAATGCTTGATGAGCTTG 153865 37 100.0 34 ..................................... CAATTTACGCGATTCATGGGACATTTATATTGAG 153936 37 100.0 35 ..................................... GACGATTATCAAATAAAATATTCAAGCCACCAGAA 154008 37 100.0 35 ..................................... AAATGCAAAAAATCTTGCTCTCAACCTTAGATGGT 154080 37 100.0 38 ..................................... TACCTAGCACACTAACTAAAAACACCCTATTTTTTCGT 154155 37 100.0 36 ..................................... GAGTTGCCATCCTTTATAATGCGCTCTCTATGATTA 154228 37 100.0 44 ..................................... CTATTAGTAATCTCTGTAGAAGTCTCTGTAGTATTCTGTGATAA 154309 37 97.3 38 ..............T...................... GATATGATGTATGGGGAACTATTTAATCAACCGAAGTG 154384 37 100.0 34 ..................................... AATTTCCATTTCTTCATTCCCAATTGATGCGTAA 154455 37 100.0 35 ..................................... TGAATGACGGCTTTGATGGTACGGGGAAGCAGGTA 154527 37 100.0 39 ..................................... TGTCTTTCTACAGTTTTTCAATTCCAAAGATAAAAAAAG 154603 37 100.0 36 ..................................... TCATCCATCGTTATCTCTCCTTTATTCCATAATAGC 154676 37 100.0 41 ..................................... GTTGCCTTTTCTTTTGCTTTAGCTCCAAATTCAATTACTCG 154754 37 100.0 41 ..................................... GCTCGAACTGACGTCAAACCCTATAGGTTTGGACGTCCTAA 154832 37 100.0 36 ..................................... GGTAGTTACGTCAATATTCTTAGGGATTACCATTGT 154905 37 100.0 36 ..................................... GAAAGAAGAGTAGAAAGAAGCAAGCTAAAGATGAAA 154978 37 100.0 39 ..................................... CGCTCAATGTTTTACAATCAATGTAATAGTTCGTCTTAT 155054 37 100.0 35 ..................................... TCGAGATTATCGACACGGAGAAGGACGAAATGTGC 155126 37 100.0 37 ..................................... CGATCTGAAATGCAAGACATGAACGCAAAAATCGGTT 155200 37 97.3 37 ................A.................... TTTCGATAAACCGTTTGTAACTTCCAAAAACTTTTTC 155274 37 100.0 38 ..................................... GGTATGGAGATGGTTAGTGATAAAGTCATCAGTTTCAA 155349 37 100.0 35 ..................................... CATATACCAACAAAGGATAAAGACATTCTATTTAC 155421 37 100.0 35 ..................................... AGAAAGTAGTAACCTTTTTCAATTTCTTCTTCTTT 155493 37 100.0 33 ..................................... TGAGTTAATAGGGATCGGATTTTCTGTGTCGAA 155563 37 100.0 37 ..................................... TCCAAAATCAATTTCCATGCGCTTATATATATGAGCG 155637 37 100.0 39 ..................................... CTAAAGTTTCTGGGCAGGAACTAACTAAAAATCTTCAAG 155713 37 100.0 36 ..................................... ATTACCATGTAATTGGAACAATTCGCTATGCCTTAC 155786 37 100.0 34 ..................................... TAAATCCATGAACGCCGTAAGCATCAGGGACGAA 155857 37 100.0 36 ..................................... AAAGTCATGGATAAATCAATGTTGGCACGAGTTTTG 155930 37 100.0 37 ..................................... CCAGTTCTGCTTCATGGGTAACAAGATTGTCCAAGCG 156004 37 100.0 36 ..................................... TGCCTTGCGATTTCGTTTAGCAATCCCTTGTAGTAT 156077 37 86.5 0 .....................G....G....C...CT | ========== ====== ====== ====== ===================================== ============================================ ================== 45 37 99.6 37 GTGATAACGCATAGCACCTCATTAAGAGGATTGAAAC # Left flank : GCTTATTGCTAAGTGGTGTAAAAGCTTATCAATTAACAGATGAGAATGTACTTCCAGATATTGATCTTGAATCGATTGCCCGCAGAATTCGAATTGAACATGCTGAATTCTTCACAAGAAGAGTAGATTTTAAAAAATTTAAAGTTATTGGCTTTTGTGGTAAATTAATACTAAGCTTAAGTAGCTTAGATCAAGTGGAAAGTGAAACCGTGTGGGAATTATTGGTGTACGGTTCACTTATGGGATTTGGATACAAAACGGCTTGGGGGTTAGGACAAACTAAACTCGAACCCTTTAACAATTTATTTCAAGTCCGATGATCATATGCTTTGAAAAAAGACCAGTAGAGCGTCGGAAACGCGAAGACTATTGATAGAGTAAGATTAGTTGAAATAAAATGATGTGGTTAGAAATAGCAATAGTATAAAAAGAACTCTTTTTTAGAGAACATCGGAAATGTAATTACGAGTTCAATGAGAGACTGGGATTGAGAATTCGCC # Right flank : TCCCCAGATGAAATTAGAAAGTTACTTTTTGTTTAGATGTAGATCTTGTTCTAAGATTCAGATATAGTAGGTTTAACTATCACTCCCCAGAATGTCCCTTCTGTCGAGTAAACAGTTAGGTTAAGGGGGAACAGAATGGATTACATGGGGCATTATCTCAAACAGTTCACTCCACGGAAGAAAAAAGAGCGTTTTTCACACCTAGATGACTCACTTACTGAGTGGGGAGAGGAATATTTGACCTTGGCTGTGGAAGGAATCCGAGGTGAGGATTCCCTCAAAAAAATTGCGCTACACCTCAAACGGTTCATTGCGTTTTATGAAAATCGGTATGGCCATGATCAGATTAGCAAATTGATTAAACGTGATTTGGTGGATTGGCAGAAAAAGCTACTTGATGAAGGATTGGCGAGATCGACGGTAAATAACCATCTTGCTTCTGTGTCTGGTTTTACGAGCTGGGTCCATCGCCAGCAGCCAGATCTGTTTTATGGCAATGA # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:0, 3:3, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGATAACGCATAGCACCTCATTAAGAGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:59.46%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-4.70,-4.90] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [60.0-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0 Confidence: HIGH] # Array family : NA // Array 1 25543-25840 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACXAG020000004.1 Hazenella sp. IB182353 contig_4, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ===================================== ================== 25543 30 100.0 37 .............................. TGGACATAATCCCTTGTGATCTTGAATCCTTTTGTAA 25610 30 100.0 37 .............................. ACTTCACGGTAACGCTCAATCTTTTTCGTTAAGTTCG 25677 30 96.7 37 ...................T.......... CCAATTTGATTAATCTGCTCTTGCATGAATTGGCGTA 25744 30 96.7 37 ....T......................... GCTTGTTGGGCTTCCTCATACTGTTGGAGGATCATTG 25811 30 93.3 0 ..C.T......................... | ========== ====== ====== ====== ============================== ===================================== ================== 5 30 97.3 37 GTTTAGATCGTACCTATAAGGATTTGAAAC # Left flank : CGAAATGCTTTCCCCTATCACGGTGCATCGGACCGATAAAGCCAGCGATGGACGAAAGGTGACCAAATATTTTTCACCTCGTGATCCTGCCTTTGAACCGCTCATCAATGAAAACCTATCCAATAAATACGCTGCTTACTATGGTAAACAGATGCCAAGTACGATTCATATCAAACCCCTCCAACTTGGAAAGCGCGATAAAGTGATTACGCGCTTTAAAGGCTTTATCATTGAAGGATGGAATGGTACCTACCAGCTGCAAGGTGATCCCGAAATACTAACCTTTGCCAGTGCAGTTGGACTAGGTGCACGAAATTCACAAGGATTTGGACTACCAGAAGTAAGAAATTGAGCTGTCGTCGATCTCCAATAGCGTAGTAAACCCCGGAGATCGAACCTCCCTGTCTACCTGCCTTCTGGAAAAATACCTCGGAATAAGATAGACGATTCATTTACTTTGCTCTATACTGAAAAAGAGGCGCTTTTCAGCACCTTTTGGG # Right flank : CACTTGTTGCTGTATATTGCAAAAATAAAAGTGCACAGTTCAGCAACCGAAAAGTGCACATCTATTTTCATAAAATTTCGTAGTAAAACGCCTTGCCAAACGCAAAGGAGAGAATCTATGCCCATTGAATATGAAGCTAAAGTTATTGAAATAAACCCACAAGAGATGGAGAAAAAAATTCTTGCGTGTGGAGGCGAAAAGTTAAAAGCGGCAAAGATGAGGCGGTATGTTTACGATTTGGAATCAAATAACCAAACTCGGAAATGGTTGCGACTTCGGGATACAGGAACAGAAGTGACACTCACGGTTAAAGAGATTAGACACGATGGAATTGATGGAACAGAGGAAAACGAAATCATGGTTCCCAGCTTTGAGGACACACATCAAATCCTGTTGAAAATGAATCATACGCCTAAAGGCTATCAGGAGAATTATCGTACCAGCTTTGTACTGGAAAATGCCCGCTTAGAAATTGATCACTGGCCCCAAATCCCACCATA # Questionable array : NO Score: 5.84 # Score Detail : 1:0, 2:3, 3:0, 4:0.86, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:0.92, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTAGATCGTACCTATAAGGATTTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:66.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.60,-0.20] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [60.0-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0 Confidence: MEDIUM] # Array family : NA // Array 2 29832-30257 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACXAG020000004.1 Hazenella sp. IB182353 contig_4, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ===================================== ================== 29832 30 100.0 35 .............................. TTTTAGAGAGTGTGGGAATCTTAAATCTTGGGTGG 29897 30 100.0 35 .............................. CTTTTAAGACGATCACTGATGGAGTTTTTGTCAGT 29962 30 100.0 36 .............................. AATGAAAAAGGATTCGATCCTAATCGAACATATAAA 30028 30 100.0 36 .............................. CAGATCACGTCACCGTTTGGTTTTTTTGTTTGGTCA 30094 30 100.0 36 .............................. ATCCTCAAGATGGTCTCTCTAACATTTTTTTTTGAA 30160 30 100.0 37 .............................. GTGTCTAACCATGTAATAATTCCTTGAGCCATAAATG 30227 30 93.3 0 ................CG............ | C [30255] ========== ====== ====== ====== ============================== ===================================== ================== 7 30 99.0 36 GTTTTGATCGTACCTATAAGGATTTGAAAC # Left flank : GTACGATTTATATGTGAAACAAGGTAAAACAATCTTAGCGTGTGCAGATATCTTAGCATGTTCACATACGTTAATCCGTTACTATCTCTTGAAATACAAAATCCCCTTACGTACCGCGGGTGCCCAAAGAATTGAAACGCATATTAAGAGTCGACTGGGGATGACGGATCAGCAAGTCCAAAAATATCTAACTGAGTTATCGCAAAAACATAGACTTGATGATCTGGTTGAAAAATTAGAATATAGCAAAGGTAGTATTCGGCTCATGTATAAACGATTAGGCATAAAACGTAGTTGGAGGTGAATGTTGATGGGGAAATATGAAAATGAAAAAATCGCGAATTTAGGTAATAGGATTCGTCGACCTGCAGTAGCGTAGTAAACCCCGGGGATCGACGACACATTAGTTGCCTGACTTCTAGGAAAATACCCAAAATAAAATAGACGATTCGCTCACTTTTCTCTATACTAAAAAAGAGATAAACTTCAGCATTTTTTTG # Right flank : CATATAAAATTAAAGCCCCCTGATTTACCTGTATATTAGGTAAATCAGGGGGCTTTACAGATTTCGTGAGTGGTAAAGTCCAATTTCTTTAGGGTTGGGATGAAAGTGGGTGTTGCTTATCCCTTTATGGAGTCGAATAGCGCATTCCAAATGAAACCTTCACGTATTTGAGAAGGTCGGTTTGCTTTTGTCATTGAATGAGCCCTGCTTCTTTGAGAAATTCTTCTGCTACTTTATCAGGACTTTCCCGGTCAATATCGACACGCGCATTTAATTTTGCCATGGTATTCTCATCGATTTTATCTGCTAATTCATTCAGCGTTTTTTCTAATTCTGGAAATTGATCCAGTGTCTCTTGTCGTACAATCGGTGCAGCATAATACGGTGGGAATAGGTTTTGATCGTCTTTTACAACTTTCAAATCAAAGCGTGGTAGAAAGCCATCTGTTGTAAATGCATTAATCACATCTACCTTTTTTTCATTTAAGGCCGCATATTTA # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTGATCGTACCTATAAGGATTTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:66.67%AT] # Reference repeat match prediction: F [matched GTTTTTATCGTACCTATGAGGAATTGAAAC with 90% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-0.60,-0.20] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], //