Array 1 248164-249962 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAHCQQ010000003.1 Klebsiella pneumoniae strain RGW5-1 NODE_3_length_343784_cov_192.938046, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 248164 29 100.0 32 ............................. CTACCGGCAGCGCTTTTTAACCGACACGTCGC 248225 29 96.6 32 ............................T GGCTGACGCGCCATCTGTACAGTTGGACTGGT 248286 29 100.0 32 ............................. GAATCGGCCCTGACGGGCCGTTAAATATAATC 248347 29 100.0 32 ............................. CGTTAAGGGCGGCCTCGGCTGTGATTTTTCCA 248408 29 100.0 32 ............................. CAATGTTTGATTGTGATCCTGATGCGGTATCG 248469 29 100.0 32 ............................. CCCACCCCAGCCACCTTTGCCGTTCTGCATTT 248530 29 100.0 32 ............................. ACAGAAACGGATCACGCGCACCCTGATCAACT 248591 29 100.0 32 ............................. CTAAACCCTTTCCCCTGAACGGAGGCGCTCAC 248652 29 100.0 32 ............................. CAGGCAACTATTGAAAGTTACGGCATCTTACA 248713 29 100.0 32 ............................. TTTTATTCATAAAATCAATGTGTTGCATTTTG 248774 29 100.0 32 ............................. ACGTCTTGTCGCAAAGCGGCTTTGACTATCTG 248835 29 100.0 32 ............................. TTTGCAATATCTGCCTGCGCCGCCGCCAACGT 248896 29 100.0 32 ............................. CAACACTGAAAGGCGTTCTGCCCAGTTTCTCG 248957 29 100.0 32 ............................. GAGCTGGAAGACGAGGACACCGGGGAGCGTCT 249018 29 100.0 33 ............................. CCGTAATTTTTCAGACCCGCAATCCCAAAAAAG 249080 29 96.6 32 ............................A AATCGCAAAACGCCCGGGGGCGCTGCGCTCTC 249141 29 100.0 32 ............................. CAGCTAATCCCCTGTCTGTTGGGGTAAGCGCT 249202 29 100.0 32 ............................. GCTTACGATTAGCTGGCTGAGCGATTTGGTAT 249263 29 100.0 32 ............................. GACTTGCCAGTAGGTGTGGAAATCCACGGTAA 249324 29 100.0 32 ............................. CATTCCCGGTGGGTGTTCGTTCACACCACGGC 249385 29 100.0 32 ............................. CGATAGCCTGGCGGTTTAACCATGAAAGAATG 249446 29 100.0 32 ............................. CAAACGCAGATGAAAATTCATGGGTCGAATAC 249507 29 100.0 32 ............................. CTTAACGGTGTCAGCGTTGACGCTGTCATGCA 249568 29 100.0 32 ............................. CCTCCGGATTCATGTCCCATCTGGGCAATGAA 249629 29 100.0 32 ............................. GAGATACCGTTTTAATTCAATACGGCGGCGGC 249690 29 100.0 32 ............................. GGCAAAAAACGGATCCGCCACGTGGAGTGGGA 249751 29 100.0 32 ............................. TCGTTATGAAGTATTGGTCGGGCGTTGGTGGG 249812 29 93.1 32 ........T...........A........ AATATTAATCACACATTATTGCGATTGGCTCA 249873 29 100.0 32 ............................. ACTGATATCACCGAACTGGCTCGGGCCATGAA 249934 29 79.3 0 ...........ATTC..........G..C | ========== ====== ====== ====== ============================= ================================= ================== 30 29 98.9 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTGTCTGCTGGCGAAATTGAACCGCCTCAACCACCGCCGGATATGCTGCCGCCGGCGATACCCGAGCCCGAGTCGGTGGGAGATAAAGGGCATCGAGGGCATGGCTGATGAGTATGCTTATGGTGGTGACGGAAAATGTTCCACCTCGCCTGCGAGGACGGCTCGCAATCTGGCTGCTTGAGATCCGCGCTGGGGTATATGTAGGTGATACCTCAAAACGGATCCGGGAAATGATCTGGCAGCAGGTGATACAGCTAAGTGACGGTGGAAATGTCGTGATGGCCTGGGCGACAAACAGCGAATCAGGTTTTGAGTTTCAAACCTGGGGAGAAAACCGCCGTATACCGGTAGATTTAGATGGCCTACGACTGGTTTCATTCCTTCCCGTTGAAAATCAATGAGTTGGATGTTCTTTAATAATGTGAGATTGTTGTGATAAAGTTGGTAAATTGTTGTGTGCTTAAAAAGCTATTATAAAACAGTAATATATCTTTAGT # Right flank : CGTCCACTAACGTTATCGATCCTGAGGGTGGGCACGAAAGCTTGCGGAGAATAAATATCGCTACCTGCCGCTCTAGCGATATCACTGTTTTTTTACCGTCTCCTGGATCGCGCTAAAATCCGGCTCCGGGCAATCCCGACCAAAATTTTCGGCCCATGGGAACGGGGCGCCGTACTTAACATAGCGCTGATACAGGTGTTTGGTTAATTGAGCATCCCGCCCCCATACCCATCCTGTTGCATTACACAGCACGGCAGCATAGGCCTGTGATTTATATGGCAACAGGTCGGCCGCTTTTTCCGCCAGCGTCACCGCCTGCCAGCGATAGTGTAAGAAATGACTGTCCTGTTTTGGCAGGGATCGCTGAACGCGTTGCCGTTCGCCATCACTTATCCACGATGTCACGGCCGAATTATCTTCCGGTCCCTGGTTGTAATAGGGCCATGAATACCCGCCTCCATATAGCGCAAAATCGGGCGCCATCTCATAGCCTGTCAATT # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [76.7-50.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 15859-16925 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAHCQQ010000044.1 Klebsiella pneumoniae strain RGW5-1 NODE_44_length_17769_cov_211.320371, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 15859 29 93.1 32 ............TG............... TAACTTTACCCCGGATCCTGATGAACCTGTAC 15920 29 93.1 32 ............TG............... TCGTGTTGTCCACGGTTACCCGCTGGCTGGAA 15981 29 100.0 32 ............................. AGGTATTTGACCTCATCCAGAAAGGCACAGAC 16042 29 100.0 32 ............................. GCACCCTCACGGATACCTTTTGCACAGTGTTA 16103 29 93.1 32 ............TG............... TTACCAATGGGGAAAAATCTTCATTTGTAAAT 16164 29 96.6 32 .....T....................... CGAAAACGGCAACCTTCATAAAAACGTCTTTT 16225 29 93.1 32 ............TG............... CCGAGATTGAGTAAAGCAAAGTAACGGCGGTG 16286 29 100.0 32 ............................. AACAATTTGAAGTTTCTGCGCCAGGTCGTTTC 16347 29 100.0 32 ............................. AGCAGTTCGAGGAATAGTGACAGGCAGTGCAG 16408 29 93.1 32 ............TG............... TTAATGTTTTGTTAATTTATGAGTGTGGTGAT 16469 29 93.1 32 ............AC............... AGCAAATCGAAAATCCGGCTGTTTGAAAAATG C [16480] 16531 29 89.7 32 .............T.A............C CATGAGCCTGCGCACTCTGACGCGCACCTGCT C [16536] 16593 29 100.0 32 ............................. TGAGGCTGCTGACGGAGAATTGGGACCTGTTC C [16598] 16655 29 96.6 32 ..............C.............. CCGACCCGGTGCCCAGGAGAACTGGCTGAATA 16716 29 93.1 31 .............G.A............. TTCCCTGCACTAAGACGCTGGTGGTCGCCAC 16776 29 93.1 32 ...C......................T.. CCGGTTCGGATTTTGCGAAACAGGTGCAGGGC 16837 29 96.6 32 .............T............... GGCATGAGCGAGAACCACTGCGAGAGTGTGGT 16898 28 86.2 0 ..........A.....T.....-.....A | ========== ====== ====== ====== ============================= ================================ ================== 18 29 95.0 32 GTATTCCCCCCGCATGCGGGGGTTATCGG # Left flank : GATAAAGACACCAAAGCTGAGCTTCAAATCAAAGTACGGGAGCTCGATGAAAAAATTCAGGCCCGCAAAGATCAGAAGCAGGAATCTCGCGAGTCAATTCGCCGCCCGATTGACCCGTATGAAGCGTTTATCACCGGCGCAGAACTCAGCCATCGCATGAGTATTAAAAATGCGACTGATGAGGAAGCAGGGCTTTTCATTTCTGCATTAATCCGCTTTGCAGCCGAACCACGTTTTGGCGGTCATGCGAATCATAACTGCGGTCTGGTGGAGGCTCACTGGACAGTTACGACCTGGAAGCCGGGTGAACTGGTACCAGTTACACTTGGAGAAATCGTCATCACACCGAATGGTGTTGAGATTACCGGGGACGAGTTGTTTGCTATGGTAAAGGCATTCAATGAAAATCAATCTTTTGATTTCACTGCCCGCTAACTCCAAAAGCTGGTGGATTTTAGTGGCGCTATTTAATATTTTATAATCAACCGGTTATTTTTAGA # Right flank : ACATAGAAACCGCAATGGTGGGGCTTTTGTCATGTGCCCCTACAAGCAGATGGGACTTTTTACAATCAAGGAAAGTTACTTTCCTGGATAACCCACTTTCTGCCATCTTTTGTCTCAAAGGGTACTCCCACCGTGGCAGGTGGGAGGGGAATTTGAATTGACGCGATAGCGTTAAAGGAACATTTAGCCGCGCTGGTGCTGAATGTAGCGCTTTACGACTTCCAGCGGTGCTCCACCACATGACCCAACAAAGTAGCTGCGTGACCAGAGAACAGGCTTACTGTACGCCTCCCGCAAATCCAGAAATTCATTCCGTAGCCGCCGACTTGTGACGGCTTTCAGGCTGTTAACCAGTTTTGACAGTTGCACAGTTGGTGGGTATTCGACCAGCATGTGAACAAACAGTTTTAAACAGAACCAAAGCAGACTGGCAAGGTTACAGCGCCAGCTTGCCCGTAAAGTGAAATTCAGTGCGAACTGGAAGAAGCAGAAAGCAAGAA # Questionable array : NO Score: 5.42 # Score Detail : 1:0, 2:3, 3:0, 4:0.75, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.41, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTATTCCCCCCGCATGCGGGGGTTATCGG # Alternate repeat : GTATTCCCCCCGTGTGCGGGGGTTATCGG # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,7] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTATTCCCCCCGTGTGCGGGGGTTATCGG with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [3-15] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [70.0-51.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.18,0.74 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //