Array 1 16707-17285 **** Predicted by CRISPRDetect 2.4 *** >NZ_APAO01000025.1 Salmonella enterica subsp. enterica serovar Hartford str. CFSAN001075 CFSAN001075_5000005, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 16707 29 100.0 32 ............................. CGAGCGCCGGAGTTGATTAGTGGTGCCGGGGA 16768 29 100.0 33 ............................. CTGATCGCCGGATACGTCGCGAGCGACATCGAG 16830 29 100.0 32 ............................. CCCTTGAAGCGGCTCAATTTCACCATGACGCA 16891 29 100.0 32 ............................. TAGCCGCGGCTCACCGTCTTTCGGTTCAGGCC 16952 29 100.0 32 ............................. CGGGCCGTCTTTCAGCGTCTTCCACTCGCCGC 17013 29 100.0 32 ............................. CGTTATAAGGCGGTAACAGCGAAAACGTATGA 17074 29 100.0 32 ............................. GCTCCCGACTCCTGAATGAAGGTGTCGATTAT 17135 29 100.0 32 ............................. ATCTGGAATTGTTGACGGTGGCTGATTTAGCA 17196 29 100.0 32 ............................. TCGCCTTTTCCAGTCGCCTGCACGCTATATCA 17257 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================= ================== 10 29 100.0 32 GTGTTCCCCGCGCTAGCGGGGATAAACCG # Left flank : GTACTCGCTGCCGGTGAAATTAAACCACCTCAGCCTGCGCCGGATATGCTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTTGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGTTGCGGAAATGCCGTCATGGCCTGGGCGACCAACACGGAGTCGGGATTTGAGTTTCAGACATGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTTAGATTAGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTATGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : C # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCTAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [5,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCTAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [71.7-0.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.14,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 1292-532 **** Predicted by CRISPRDetect 2.4 *** >NZ_APAO01000014.1 Salmonella enterica subsp. enterica serovar Hartford str. CFSAN001075 CFSAN001075_3000007, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 1291 29 100.0 32 ............................. AGCACTTCACCGGATCGCTGGTTGTGCCGGTG 1230 29 100.0 32 ............................. GAAAAGAAGAAATAATGAGATTTGCCCCGGAA 1169 29 100.0 32 ............................. CGTCAGCGCGGTATTGAGGCCGGGGACCGCCC 1108 29 100.0 32 ............................. AACAGGAACAGGAAAAAAAAGATTTGTCCGGT 1047 29 100.0 32 ............................. ACGTTTTAACAGGGTAATATTTACTTAATTAT 986 29 100.0 32 ............................. GTTACTTTATTATCTCTCGCATAGACCCGGCA 925 29 100.0 32 ............................. CAGATCCTCAACGGTCAGGCTGTTTAGTTCCT 864 29 100.0 32 ............................. AAAACCGTACAACAGACAAAATATAAATATTG 803 29 100.0 32 ............................. CGGAGGATGGAATATTTCCGAGGCTGGCGATT 742 29 96.6 32 .............T............... ATGCCGGAACGCTGATGGCGTTTGACATGAGC 681 29 100.0 32 ............................. AATTATTTCTGTGGCTGGGGTTTCGATTCGAT 620 29 100.0 32 ............................. CGTTCATCGGCAGCGTCACGCAATATGAAGAT 559 28 82.8 0 ...............A.AA.....G-... | ========== ====== ====== ====== ============================= ================================ ================== 13 29 98.4 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGTGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGACAAAAAGTAGTTTATAAACAATTATATCCGTTTAGT # Right flank : TTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTATACAGGAGATGACCCGTCCTGAATAGCGTTGACACGTTCCAGACTTAAATCCGGAGAACGTGATGATGACTGAGTTCAAACGCACCCAACGCGATTATCCTCTATCCTTTAAAATAGCCGTCGTTGAGCAGGTCGAAAAAGGCGAGATGACCTATAAACAGGCCCAGCAGCGATATGGCATTCAGGGGCGCTCCACCGTACTTGTCTGGCTGCGTAAATATGGCCGGCTTGACTGGAGACCCGGACTTCCTGACCTGGTGAAGAGGAAACTGCCTGTGGCTCAGACAACTATCCCGCTGACACCCGAGCAAAGAATCAGGGAACTTGAAGAACAGCTTGAGCTGGCAAACCAGAAAGCTGAGTTTTTTGAGTCCGTTATCAACGTCCTGAAAAATGATTACGGGGTAAGTGTTGTA # Questionable array : NO Score: 6.18 # Score Detail : 1:0, 2:3, 3:0, 4:0.92, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 28984-27978 **** Predicted by CRISPRDetect 2.4 *** >NZ_APAO01000037.1 Salmonella enterica subsp. enterica serovar Hartford str. CFSAN001075 CFSAN001075_4000007, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 28983 29 96.6 32 .............T............... ATCTGGAATTGTTGACGGTGGCTGATTTAGCA 28922 29 96.6 32 .............T............... TCGCCTTTTCCAGTCGCCTGCACGCTATATCA 28861 29 96.6 32 .............T............... TCGGCAGCTACTTCAGTGTTAGGCGGCATCCA 28800 29 96.6 32 .............T............... GCGTTGTTGTTATTCGCCAGACCAAGATTCCA 28739 29 96.6 32 .............T............... TTGGCGTGCGGCGAGGTCATCAGATAAAGCGC 28678 29 96.6 32 .............T............... TCGGCAGCTACTTCAGTGTTAGGCGGCATCCA 28617 29 96.6 32 .............T............... CCACGGCGCAGGAAATCTCCTTTGCAACAGGG 28556 29 93.1 32 .G...........T............... GTCTTATAAATTGGGCTGATAGTGCCGCTGAT 28495 29 100.0 32 ............................. TACCTGCCGCTACCGCGCTGGACTGCGCCGCC 28434 29 100.0 32 ............................. TGTAATCTCTCTATTTATAATCTGTATTGTAC 28373 29 100.0 32 ............................. CAACTGGTGATACGGTTATGTCTCGTATCGCA 28312 29 100.0 32 ............................. GTGATCGAGTATTGCTCGTTGTCGGCGTGGGC 28251 29 100.0 32 ............................. AGTAATCAACTCAATGCGCTCACAACGCAATG 28190 29 100.0 32 ............................. CCAGATCGCGCAAATCGCTGCGAGTATTCAGG 28129 29 96.6 32 ............T................ TCCACGTCGCCCGCCATCAGGTTCGCCAGCTC 28068 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGACAAGGGCTGAAAA 28007 29 93.1 0 A...........T................ | A [27980] ========== ====== ====== ====== ============================= ================================ ================== 17 29 97.6 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : | # Right flank : TTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGTACTACATCGCGGCTACGGCGCTCAATTCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGAGGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCACTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCGT # Questionable array : NO Score: 5.78 # Score Detail : 1:0, 2:3, 3:0, 4:0.88, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.64, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : GTGTTCCCCGCGCTAGCGGGGATAAACCG # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [50.0-0.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //