Array 1 60505-59573 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP064952.1 Schaalia sp. ZJ405 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================ ================== 60504 36 100.0 28 .................................... CAGGACGGGGCAGAAACATCGGGAAAAC 60440 36 100.0 28 .................................... GATACGCGCGTGGGGATCGTTCACGGCA 60376 36 100.0 28 .................................... TCCGGGCACACGGATAGCGTCGGGAGCT 60312 36 100.0 28 .................................... TGTGTTGCGGCGAGTGTTGTTGCTTGGG 60248 36 100.0 28 .................................... CCAACAACAAACCAGACGCGGCGCCGAA 60184 36 100.0 28 .................................... ATTTCGACTCCATACATGCTGGCAAGCA 60120 36 100.0 28 .................................... CGCGGGCGGCGCGGGTTGCGCCTGATGT 60056 36 100.0 28 .................................... GAAGCGCAGGATGTGATTGTGCGTCTGG 59992 36 100.0 28 .................................... GTCATACATGCGGCGAGACTCCAGTCTG 59928 36 100.0 28 .................................... CCCGGGGATGTTCCTTCGGTTTACCGGG 59864 36 100.0 28 .................................... AAACGGATGCCTGACGAATATCATTCTC 59800 36 100.0 28 .................................... AAAGGCGTTGACGAACATCGACGCTCAC 59736 36 100.0 28 .................................... AATGAAATTCTTTGCCGCTTGCGTAGTA 59672 36 100.0 28 .................................... GTTCACACTCGTTTCCTGTGTAACCCTA 59608 36 91.7 0 ...............A.....C............A. | ========== ====== ====== ====== ==================================== ============================ ================== 15 36 99.4 28 GAAGTCTATCAGGGGGAACGATGACTGATTCCCAGC # Left flank : GACGACGGACGAGGGATCCCTGCAGTCCTCGATGACTTTGCACAGCAACTCGGTCAGTACATCGAAGGGCAGCGTGAACGGCTAAATCCACCAACCTGGAGGGGGCCAATTCAGACCAAGGATTCTACACATGCCGGATGATTCTATGTGGTGCCTCGTGATGTTCGATCTTCCGGTTGAGACAAAAACTCAACGGCGTGAAGCTTCTCGTTTTCGACACACTCTTCTCGATTGGGGCTTCTCTATGGTCCAGTTCTCTGTGTACATTAAGTATTGGCCAGCGGGTGGCTGGAATTACGCCACGATAAATGCAATAAAGACCTATCTGCCCGAGGGAGGACAGGTCCGAATAATCGCATTGACCGATCGTCAGTGGTCCACGGGGCTCCGTTTTGAGAACGCGAAGCCACAAACACCCGAGTCAGAACCCGAACAGCTCATGATTTTTTAACGGAAAATCTTTAGTTTTCCTTGTAATTCCAAGGGAAAATCGTCCCCCT # Right flank : TAGGAATTCTCTCTACTGTGTCGGTCCCGACCCTATCAGAACATATTCCGTACGCACATCCGCGACAAGCAGATGCACCACTCTAAAGCAGTAAGCATCAATTCGCACCATCTGAACCCGATGCCTCGCATGACGCGGTACTCATGTCAACTGATGTTGTGCATCAACTGACCGTAGACGTTGACGCGCTGCACGGTCAGATTCAGATCCGAAGATTCAAAGGTAAACATGGAGAATTCCTATCGAACTATTATAGACTTTCCTCAGCATTCACAGTCCTCCCTCGTCGCTACGAATCATTCATACGGAAGGTGACCCGCGATGCCAAAGTTGACTCTCACCCAACTTGCACTCTCGATGTCCTTGATTGTCCTGACAATCTTCATTGGGTTCCTCATTCCCGGAAAAGGCCGCCACCGCAAGGGTCGACGCTAGCCGGTCCGCAGGTACATCACGGATCAAACGAATCAGCTGTCATCGGCGATCCGCACGCGATACCT # Questionable array : NO Score: 3.23 # Score Detail : 1:0, 2:0, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GAAGTCTATCAGGGGGAACGATGACTGATTCCCAGC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [7,10] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-2.50,-3.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [51.7-65.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,1.42 Confidence: HIGH] # Array family : NA // Array 2 721704-721887 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP064952.1 Schaalia sp. ZJ405 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ======================================= ================================== ================== 721704 39 100.0 33 ....................................... TCTGAAACAGGGGTTTTGGCCGTTCTGAGGTCG 721776 39 97.4 34 ...................T................... CTGAAACCATCGATTTTCGGGCAATTTTTGGCCC 721849 39 97.4 0 ..C.................................... | ========== ====== ====== ====== ======================================= ================================== ================== 3 39 98.3 34 TTTGCGTCACAGTGAATCTATTCGTTGTGACGTTTTTGG # Left flank : GGTCATGCTGGCCATTGCGCTGGCCGGTGGTGAATCCGAGCCGAAGATCGACGGGGCAACTCTGGATGACAAGCAGTACGAATCCAAGGAAGGCAACCCCGTGAAGTCTTTCCTGCTCACCCCGCAGATCGTCACGAAAGACAACGCAGCGGACATCTACAAGGATGACGCGACCCGTGCGAAGCTTGTTGAGGAAGCCTCGAAGTGAGCATCTCCTGATCGCAGATGGTTTAAGCGCTTGTGGTGATTGTGCCTCACTCGGCACAGTTGCTGATACGACCACCGATCGGTTGGTGAGCGTTTAAGCTGTCAGCACTCATCGGCACCACTGTGAAATAGCCGAGACTTTGGGCGGTGGGGTGAAACGTGAAGTTTCACCCCACCGCCCTTGTGTGTGTCCAGGCCGTGACGGCTTTGTGTCAACGACTGTGAGGGCTTGGTGTCCACGACCGTGATGGGAGAGCCTGCTCTTCGACGGATCTCCCTGCCATGCGTGGTCG # Right flank : GCTCACGCGTCGTCCCCACCCGTAGCGCCCCATCGTCCTCGTGAAAGGCCGAAAATCTACGACGAACGGCGCACCCGTGTGGCCCCTGTAATTGCCGCAATAATCGTTTCGATTGACGCGTCCTGAGCGTCAAAAGACCCGTTGTTACGACCGTGGCGAAGGACCTCCACGCGATCCGAAACCGCCTTGACATCCGTCAAATTATGCGAAATGAATAGCACGCCCAGGCCCATGTCGCGTAGGCGTTCAATGTGAGTAAGGACCTCCGCGGTCTGGCCGACCGACAGCGAAGCAGTCGGTTCGTCCAATACCACCAGGCGAGGATTCGACACCAAGGTTCGTGCAATCGCAACGCACTGACGTTGCCCCGCCGACAACGACCGCAGGGGAACAGAGACATCCGGGATCTTTGAGTTCAACTGATCCAAGTATTCGCGGGCGCGCAACGCCATTTCGTCCTCGTCAAGGAAAGCTCCCTGAGTGTGCTCTTGACCAAGGAA # Questionable array : NO Score: 2.58 # Score Detail : 1:0, 2:0, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : TTTGCGTCACAGTGAATCTATTCGTTGTGACGTTTTTGG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:58.97%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-10.90,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [36.7-36.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0 Confidence: HIGH] # Array family : NA //