Array 1 6663-7226 **** Predicted by CRISPRDetect 2.4 *** >NZ_SJOT01000024.1 Megasphaera sp. SW808 24, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ =================================== ================== 6663 32 100.0 34 ................................ GACCGGCTAAACATCGTTGTCGCCGTTATCGTAT 6729 32 100.0 34 ................................ TGGAACACGATGGTATATATGCAGAATACGTCCG 6795 32 100.0 35 ................................ AGCTTTAGGCATTACCGCACGAGGTGGTGGGAGAG 6862 32 100.0 34 ................................ CGATGGGATGGCTATGTTTAATGGCGATACTGAA 6928 32 100.0 35 ................................ TCGTCGAACAGCATTGAATTTGCCAAGCAGGAAGT 6995 32 100.0 35 ................................ TTGCAGTTCGTCAACTCGTCCTGTAGCTGCAGCAA 7062 32 100.0 34 ................................ AATCATCGGCATATCGTCATAAATAGAGTTAGAC 7128 32 100.0 35 ................................ TGCGGGGTACCTAAGTAGATAATCTTGCTGCTTTC 7195 32 93.8 0 .............T...A.............. | ========== ====== ====== ====== ================================ =================================== ================== 9 32 99.3 35 GTCGTTCCTCATGCGGGGGCGTGGATTGAAAT # Left flank : CCGAGATGGGAGAAAGGATAGTGTAAAGTTGTTGTGGGAATTTTTTTGACAGGCCATTTTTGATAGTTCTCTTAATCTGTTAATATTACTACTATAGTTACGTTATAGACAGCATACAGCAACGTGCTGACACTAGCATTCCCGTTACGGTATATATTCTTTAACTTTTGTACTCTAAAGTTTTTCCACAATTATTTTACGCTGTCGGAGAAAGTGTAAAATGCTGTTGGATTCAGGAATACACAGGACGATGTAAGCAATGATACAATGAACGATAAAGAGATTTCATATGGTATACTAAAGAAACCCATACGGATAGGGAAAAATATCATAAGGCCGCTTGTGCGAACCGGAAGCATGCGGCATTTTCCCTTTAGTTCCGCACTAACATACATGGAAAGATGCTGTTTGGTGATGCGAAAAATCGGTATAAATTACTGAATATAGTCATTAATGCCTATATTTGCTGAGGTTGTTTTTGTAGTATACTAAATGTAGCG # Right flank : TGTTCAAAGAATCCTCGCAGCATGCTTCGTAATTGCGAGGCTTCTTGATGGATACCGGTAACTAATAAATGAAAACAGCAACACCTTGCCTTAAAGAATATCTTTATAAAGGATGAGATGCCCTATGAAACAGAACCTAACATCTTCCGATTTAAAACCGATTCTTCATTCCAAGCGAGCTAATATTTTCTACTTAGAAAAATGCCGTGTCATGCAGAAGAACGGCCGTATTGTGTATTTGACAGAGACGGAAAAGGAAAATTTGTACTGGAACATTCCGATTGCCAATACGACGGTAATTTTATTGGGAACAGGTACGTCTATTACGCAGGCGGCTATGCGGTTATTGGCCAGTGCCGGCGTTCTGGTTGGGTTCTGCGGAGGAGGCAGTACGCCTTTGTTTGCCGGTTCGGAAATAGAATGGCTGAATCCGCAGAGCGAATACAGGCCGACTGTATATGTGCAGGGATGGCTGTCCTTTTGGTTTGACGAGGCGAAGC # Questionable array : NO Score: 9.22 # Score Detail : 1:0, 2:3, 3:3, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGTTCCTCATGCGGGGGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: R [5,9] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGTCCCTCATGCGAGGGACGTGGATTGAAAT with 91% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-7.10,-1.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [70.0-53.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [10.05,0.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 2 16020-16827 **** Predicted by CRISPRDetect 2.4 *** >NZ_SJOT01000024.1 Megasphaera sp. SW808 24, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 16020 28 100.0 32 ............................ ATTGTATCGCTGCAAGCGTCATGATTATTTCA 16080 28 100.0 32 ............................ AGGCAAGACCTCATCGATATAAAAAGGGATAA 16140 28 100.0 32 ............................ AAACATCCAAAGACTGCGCATATGTCGAACGC 16200 28 100.0 32 ............................ TTCTGGTGCTATGCCGTCTACGTCTGCTTATA 16260 28 100.0 32 ............................ TATTGCACGGATGAAGAATTGGCGATGATCAA 16320 28 100.0 32 ............................ AATGGTATGCATGAACATGTGTGTGTGATTAG 16380 28 100.0 32 ............................ AATGGAAAAATCCGACCAGCAGTATCATCATA 16440 28 100.0 32 ............................ ATCCAGAGAGACGAAAACGGCAACGAAATGGA 16500 28 96.4 32 ...G........................ AAATATCCAAGCTCTGCGCATACGTACTACGC 16560 28 96.4 32 ...G........................ TTTAATTCCAAATCGAGCGGATACATACTGTA 16620 28 96.4 32 ...G........................ TTCATCGGGCACGGTATGCATGGCCGCGACCC 16680 28 96.4 32 ...G........................ ATTATACAGGGCGGGAACCAGAAGAAAATTGC 16740 28 96.4 32 ...G........................ ATGAAGGTATTGAGCTGACCTGCGATAATATC 16800 28 92.9 0 ...G....................A... | ========== ====== ====== ====== ============================ ================================ ================== 14 28 98.2 32 GTTATCTGCCGCATAGGCAGTTTAGAAA # Left flank : TGGAACTATTGGATATAAAGGGCGTATTGCGGCGTTTTGCTGATTATGTGGCTATTGGAAAGATAAAGAAAATACCATACAAAAAAATAAAAGGATACGCTGTGTACAGCCGATATCAGCCGGACAGCTCCGTCCATCAAAAAGCAAGACGGTACAGCCAACGCCATCCTGATACTTCCTATGAGCAGGCACTGCAGATTATGAAATCAAAAAATCGGGCGACGCAGCTGCCGTATATTCAGATGTGTAGCATGACGAACCACAATCCATTCCGATTGTTCATTAAACGGACGAAAGCTGAACCAGGAGAGAAAAATCATTTTGGCAGTTATGGATTGAGTCCTCATTCCGCAGTACCCGAATTTTAACCAAAATAAAATGAGTAAAGGAAAATCCTTGGAAATATGCGGATTTTTGCTATCTGGAAAAATTTAGGGTAAAATAAGGAAAACATACTGCCATGCCAGTATGTATGCCGTATGGCAGTATGTTTTCTTACA # Right flank : AATTGAAGTTGTGTGAAAACTAGGGCGAAACGAATCGTTCGGCTGCGGACATTGGCAGAAAATGGCGGCGGGTACCGTATTGCGTACATGAGGTAGATCACAGCTGCCGAAGGAAGGAAAGGGACGCTGCGACGTCCCCATCGAATAAATCCCATCTACCATTGATACTGTCGGGAATGTACATGGTATTGATTTTTTTTCGTCTTTTATGACGAAACGGAGCCGTTCGTACAGAAATCCGCGTATTGACAGGCTCTAGGGGGCATGCTATAGTTAATTGAAATCTATTTATATGCAGGTCAGGTGTCGCAGACTTAATAGAGAAGTCCGGTGAAACTCCGGCGCGGTCCCGCCGCTGTAATGAGGAGCGACGCTGCAATATGTCACTGTACCCCATAGGTATGGGAAGGCGCAGCGGAGCTATGAATCCGAGCCAGAAGAACTGCCTGACTGATAATCACCGATAGACCTGCGAGCGATGGGAATGGAGATTCAATGGT # Questionable array : NO Score: 6.17 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTATCTGCCGCATAGGCAGTTTAGAAA # Alternate repeat : GTTGTCTGCCGCATAGGCAGTTTAGAAA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:57.14%AT] # Reference repeat match prediction: F [matched GTTTTCTGCCGCATAGGCAGCTTAGAAA with 96% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.20,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [61.7-53.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 19158-18791 **** Predicted by CRISPRDetect 2.4 *** >NZ_SJOT01000034.1 Megasphaera sp. SW808 34, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =============================== ================== 19157 36 100.0 31 .................................... CAGTAACGGCAACAGCCGTGGACGGAAAAAG 19090 36 100.0 30 .................................... GTAGAAATGCAACAGGGATTTGACACCCAG 19024 36 100.0 30 .................................... TTTGGATAAATAGTTAAATTAGCAAAATAG 18958 36 100.0 30 .................................... GAAAATTATATGCTGGGCTGGTATTTTGTC 18892 36 100.0 30 .................................... TCGCTGGGGCATATAGATTCTCCAAAGTTT 18826 36 91.7 0 ..............................C.TG.. | ========== ====== ====== ====== ==================================== =============================== ================== 6 36 98.6 30 ATTATACCTTAGCGAGAGATATTAGGGAACTACAAC # Left flank : GGTGAAAAAATTCCTGATCTAGATGAAAATAAGAAGAAAAACACAGTCGTTGTTTTGTAATTTTTGCGAAAAAAGTGTCTTGAAAGAGGCACTTTTTTTGCTTTTCAGACGATTTTTTTCATACTAAAAAGCACGTCGCAGCAAGTGTGCAACGTGCTTTTTAGCAGGTA # Right flank : ATATAAGGGGACAGAGTCAAGTTGTTGTGAGTAAATAAATTTATAACTGTGTGAAACTTTTTCTGTAAATAGCTGCTATTGCACTAAATCACAGTGTATGGCTGGCAAGGACTTAGAACCATAAATGGCTATATTAAGCCGTTTTTAGCTTTCATTTGGTTTCTGACGCTTCACAGCGTTACGCGTAACGTCTTCTTTTCTTTATTCTCTTTCTTTTTATATTTTTTCTGTCTTATTTTTTATTTAGTGTATTTTCTTTTTTTTTGATGAATCGTTTTTGCTTTGCGTTTTATGCAAGTTTAGCAAAGGAGGAAATAAATTCGGCCCTTCATGTCCCTTACTACTATAGAGAGCTGCGAAGGGAGAGGTGCAGACATGAAGGCGCTGCGATGGTTTCAGACAAAGGTTGGGTTATTTCAGGACCCGCGGATGATGTATTTGCTGAGTCAGCCTCATGGCGATTCGTATTTCGTCATTTGGTTTTATCTCAAGGATTTGGC # Questionable array : NO Score: 3.19 # Score Detail : 1:0, 2:0, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTATACCTTAGCGAGAGATATTAGGGAACTACAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:63.89%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [0.00,-2.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-61.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.78 Confidence: HIGH] # Array family : NA // Array 1 23452-22643 **** Predicted by CRISPRDetect 2.4 *** >NZ_SJOT01000022.1 Megasphaera sp. SW808 22, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 23451 28 100.0 32 ............................ TTGCGCATCATACATTCGCACAATATAGTTAA 23391 28 100.0 32 ............................ TTGCGCATCATACATTCGCACAATATAGTTAA 23331 28 100.0 32 ............................ ATAATTTATTTTCTCCAGCAAAACAATCCAAA 23271 28 100.0 32 ............................ TATGAAGGAAAAAGTGACGGCCGCTGCTACGT 23211 28 100.0 32 ............................ GTATACTGTATGTATACGGGGGTTCTTTTTTA 23151 28 100.0 32 ............................ AATACAACCTCTTTGATGATGTCTTTCAAGTC 23091 28 100.0 32 ............................ ATAAAACCTCACTACGCTTCTTCCTGTGGATT 23031 28 100.0 32 ............................ GGATATCCCAGCCTGCGCAGTGCGCTCTTATA 22971 28 100.0 32 ............................ ATGTAGATAGCGTCGGTTTCGGCTTTTGTCTT 22911 28 100.0 32 ............................ ATATCGACGAGGTTCCATCCTACGTCGGTATG 22851 28 78.6 32 C..G.......CAC......C....... CACGACCAACAGATCACGTTACAAGAAGCGGC 22791 28 85.7 32 ...G.......CAC.............. TTTCATTGCGTCAAGTCGTGACATCGTTTCTC 22731 28 89.3 32 ...G.......CA............... ATAACTCGTCAACGGGTATCCGCAAATAGAAA 22671 28 89.3 0 ...........CA..............T | C [22647] ========== ====== ====== ====== ============================ ================================ ================== 14 28 95.9 32 GTTATCTGCCGAGTAGGCAGTTTAGAAA # Left flank : GCCATGCCGGCTTTGTCATCCTCCGTGTGAGGGCGCTTTGCTGATTATTTTCACATCAAAAGCATACGAAAAGACATCCGTTTGAGTAGATTCAATAATTATGTTATATACAGCAGATATTAGTTAGATTTTTCTGGACATCAAAAAAAGCAAGACGGTACAGCTAGTGTTATCCAGATATTTCACAGAGCAGGCGCTGCAGCTTATGAAATCAAAGGATTGGGTAGCGAGATTACTGTGTATTCAGATGCACAGTATTACGAGCCGTACTCCATTTAGATTGTTCAGGACGAAAATTGAACTAGGAGAAAAAACATGATGTTGAAAGCTATGGATTAAGTCTTGCATTCCGTTGTGCCAGAATTTTAACCCAAATAAAATGGGCAGAGGAAAACCATTGGAAATATGCGGTTTTTGCCAACCGGAAAAATTTAGGGTAAAATAAGGTAAACCCACTGCCACGCTAGTAAGTATGCCGTATGGCAGTATGTTTTCTTACA # Right flank : ATTGCGGCCAAGGAAATGCTGATGTAACGTTGTTATCTATTGCACTGGCGAATTGGGTTGTTTTGCTTTTGTGTGCTCCTATATACTTTTGAATCCTATGTTAATTACAGTCCGGCTCATAATTTTCCGCCAAAAATCTTTACACTTCTCCTGCCATATAGTATAATAGTCATTGTCGTACGGGCGCTCAGTGAATCGAAGACTCCGACGTTCACTTAGCGGTTTGCGAATAGATTATAGTCACAAATGGAGGAAGACAGATGTTAACAGTTGATCAGAAAAAAGAAATCATTGCTAAATTTGGCGCTAACGAAAACGATACGGGTTCGCCGGAAGTACAGATCGCGCTGCTCACGAGCCGCATCGTGTATTTGACGGAACATCTCCGCAGCCACAAAAAGGACCATGCGTCCCGCCGCGGCTTGCTGAAATTGGTCGGCCAGCGCCGCAACTTGCTGGCATACTTGCAGAAACACGACCTCGAACGGTATCGTGCGATT # Questionable array : NO Score: 6.06 # Score Detail : 1:0, 2:3, 3:0, 4:0.80, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTATCTGCCGAGTAGGCAGTTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:57.14%AT] # Reference repeat match prediction: R [matched GTTATCCGCCGAGTAGGCGGTTTAGAAG with 93% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [17-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [55.0-58.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.28 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 25937-23972 **** Predicted by CRISPRDetect 2.4 *** >NZ_SJOT01000022.1 Megasphaera sp. SW808 22, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ==================================== ================== 25936 32 100.0 35 ................................ TATGCGAAAGAAATCGGCGTGTACGCGAAACTCGA 25869 32 100.0 35 ................................ GAGTATCTTGGTGGATGCAGCACCCCCATTAGCAT 25802 32 100.0 35 ................................ CCGAGATTTATCAAGCCGACAACCGATGCAACGAC 25735 32 100.0 35 ................................ CTCGAGCTAATATTCCTCGCAGCCGTTTTGACAGG 25668 32 100.0 35 ................................ ATCATTACAATAAATAGATTTCTTCTTAGGACTCA 25601 32 100.0 35 ................................ GATATACTTATTATACCATACAAAGGAGTTATTTT 25534 32 100.0 35 ................................ CATGCGCTCTCGATTCAACGGTACAATAGACTTAG 25467 32 100.0 35 ................................ AATAGTGGAGTAATATAGTGCTGTTTGGGACTAGG 25400 32 100.0 35 ................................ AATACCATCATAACTAGCCGTATCAATCATAAAAG 25333 32 100.0 34 ................................ TGCTGTTGTACCGGCTGTTTGTGAATAGCCTTAT 25267 32 100.0 35 ................................ AGCAAAAAATTTGCCATCGGAACGATCAAGCTGCG 25200 32 100.0 34 ................................ ATTCGTACAGCTGGCGTTGATGGCGCAGCTAGCT 25134 32 100.0 35 ................................ CTGTATCTAGCTTTGCGCAGACTTCGCGCGGGCTG 25067 32 100.0 34 ................................ CCGTCGGCCAGCGTGAGCTTCGTTTCTACGTCCT 25001 32 100.0 34 ................................ CTTTTTTGAAAAGGGCTTATCCCAGCGTGTTCAA 24935 32 100.0 34 ................................ GCCACCATACTTATCAAGCCATTCCGACGCAATA 24869 32 100.0 34 ................................ TTTCCGCTCTGCTGATTCCGGCGATTTGGCTGTT 24803 32 100.0 34 ................................ TCAGAGTGTTGTTTGTCTAATAAAGCAATATATC 24737 32 100.0 36 ................................ CTGCAATTCTTCTGCTGATATTCCCCAGGCCTGTCT 24669 32 100.0 35 ................................ GGAAAATCATGAGAGAAAATTATGGGCGAGATGAT 24602 32 100.0 34 ................................ TATGATGTCGTCAATCACTTACAGAACACGGCTT 24536 32 100.0 36 ................................ CTCCGGTACTCCGTAGTATCCCTCCAGTACCAAAAC 24468 32 100.0 34 ................................ GTACCGTACTCACCACAATGCAAGAAACGAATAC 24402 32 100.0 35 ................................ TACCAGAAAAATAAGAATTGGGAACAAAGAAAACC 24335 32 100.0 34 ................................ TGTGCTATAGTGGAATTGGAAAATTATTTTTGTT 24269 32 100.0 34 ................................ CTCCGGCACCACAGTCTTTTAGTAAGCACTGGAT 24203 32 100.0 34 ................................ TGTTTTGTTTCCAGCTCGTTTTTATGGGTAATAT 24137 32 93.8 35 ........C.A..................... ATGGCCTATGTCTGCCGCGGCGAAGCCATGCCGGC 24070 32 90.6 35 ........CC.............A........ GGCTCGAACCGCATCGATATTGCGATTGGTTTCAC 24003 32 90.6 0 ........CC...T.................. | ========== ====== ====== ====== ================================ ==================================== ================== 30 32 99.2 35 GTCATCCTTTGTGCGAGGATGTGGATTGAAAT # Left flank : GCTTCTGTGGACGAGCATTATCAATATGTTTGAGCACGATCATTCGGCAGCTCGCGGCAAGATGACTGTACGGGAGCTCATCGTATTTAAACACGACAGCGAATTGGGAAATGCGCCGGCCCATAAGCTGTTTGAAACCGTTTCAGTTCAAAAAAAATCTGATGAAGTCGTTCCGCGCTCATATGATGACTATGAAGTGTGCGTGCATGAAGATAAAGTGCCGGCAGGCGTAACCTGTATGCGAATGATATAAGGAACCAGCAGATTCAATGATAGTAAAAAGTGCACTCTTGCAGTGGCAAAGGAATAAGGCCTAGCGCATAAGAACGTAGCAGGTAAGAGTGCGAATGTAAAGCATGGGCTATTTCTCCAGTGCATTCGCACTCAAAACCTTTAATGGTATTAAACTTTGCGGCCATTTGTTATGGCCAGAAGCAAGTATGCTGCATAAAGATATCTATATTTGCTGTATGAAAAACTGTGGTATACTATATGTAGCG # Right flank : TTTCAACAACTTGCGATATTGCCATGCCGGCTTTGTCATCCTCCGTGTGAGGGCGCTTTGCTGATTATTTTCACATCAAAAGCATACGAAAAGACATCCGTTTGAGTAGATTCAATAATTATGTTATATACAGCAGATATTAGTTAGATTTTTCTGGACATCAAAAAAAGCAAGACGGTACAGCTAGTGTTATCCAGATATTTCACAGAGCAGGCGCTGCAGCTTATGAAATCAAAGGATTGGGTAGCGAGATTACTGTGTATTCAGATGCACAGTATTACGAGCCGTACTCCATTTAGATTGTTCAGGACGAAAATTGAACTAGGAGAAAAAACATGATGTTGAAAGCTATGGATTAAGTCTTGCATTCCGTTGTGCCAGAATTTTAACCCAAATAAAATGGGCAGAGGAAAACCATTGGAAATATGCGGTTTTTGCCAACCGGAAAAATTTAGGGTAAAATAAGGTAAACCCACTGCCACGCTAGTAAGTATGCCGTA # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:0, 3:3, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCATCCTTTGTGCGAGGATGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:56.25%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-0.10,-2.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [8-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [48.3-68.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.55 Confidence: HIGH] # Array family : NA // Array 1 41294-37806 **** Predicted by CRISPRDetect 2.4 *** >NZ_SJOT01000008.1 Megasphaera sp. SW808 8, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ==================================== ================== 41293 32 100.0 36 ................................ TGGTATACGTTATACATCAGGGCAGCTGGGACGGTG 41225 32 100.0 34 ................................ TATATCCGCTGCCTGGGTCTTTCCGGTTATCATT 41159 32 100.0 35 ................................ CGCCGTTTTGCGGGCTTCTTGTTCGCCGTGCAGGC 41092 32 100.0 35 ................................ GCCAGTATGCCGCTGACATTGAATCTGCCCGTCAA 41025 32 100.0 34 ................................ TATCATTGAAAAGGGTAATCGGTCCGGCAAGTCG 40959 32 100.0 35 ................................ CTTGAAGATGGCCGTCATCATCCCGCGGCCAGCTC 40892 32 100.0 34 ................................ CAGATGCTTTCTGAAATGGACAAGGACAGAATGA 40826 32 100.0 35 ................................ TATACAGTGAATCACCTTATCGCCCCTAATCCAGA 40759 32 100.0 34 ................................ GCCTATGGCGTTATCATATTCCTCCGCACGTTCT 40693 32 100.0 34 ................................ GGGTCAGTCTGTACAACAGCCGTTACTTGTCTAG 40627 32 100.0 35 ................................ GGCATGGAAACCGCTGAAACGACGCGGGCCGCAAC 40560 32 100.0 34 ................................ ATCCGTCTGCGATGTTACCTTGCCTTTATTGTCA 40494 32 100.0 34 ................................ CAACCGGCTTTTGTATATTCGTCCATAGGCTTTC 40428 32 100.0 35 ................................ CGTTTTGCACCGTAAACAGGCCCATATCCGAGCCG 40361 32 100.0 35 ................................ ACTAGTGCGCTGTCATCCGTCTTTGAACGTCCTAT 40294 32 100.0 35 ................................ TAGCTAACTGTTCAGGAAACACCCTCACAATCCGA 40227 32 100.0 35 ................................ TTCCAGAAACAGATTCTACGTATTCAGCGATAGAA 40160 32 100.0 35 ................................ ATCCGTCTGCGATGTTACCTTGCCTTTGTTGTCAA 40093 32 100.0 34 ................................ TTTGTAACATTATAGTTACATTATATGTTACTGC 40027 32 100.0 34 ................................ AAAGATTGTCGGCAAGACAATCCAGAACAGCATG 39961 32 100.0 34 ................................ GAGCACGGTGCTCAACGCCTTGATTCATGCCGGC 39895 32 100.0 34 ................................ CTGCGGGCTACATCAAAGCAAATGGTGCGACAGT 39829 32 100.0 34 ................................ GACGACCTCACATTTACCTGGGTCAGCAGAAATT 39763 32 100.0 34 ................................ CAGAATTTCTAAAGTATTATTGATGATACCGGGA 39697 32 100.0 34 ................................ GACGTACATTTGCGAAAAGTCTAGCAGATTGCGG 39631 32 100.0 34 ................................ CTACGCAGAAGCCCATAAAACACGGATGGAATTA 39565 32 100.0 35 ................................ GCCATTACTTAATTTATTATGTATGCTTCCTATGC 39498 32 100.0 35 ................................ GTGGTGGATTGCCGATTATCGCGGCTTTAACGGGT 39431 32 100.0 36 ................................ TATTAATAGTCCTGGACTAAAAACCGAAGCTATTTT 39363 32 100.0 34 ................................ TGCTGTACCGCTACGTCGACGGCCTGAGTTGGGG 39297 32 100.0 35 ................................ TAAAATACCCGTTATCAATTTTAATCCGCAGGAAC 39230 32 100.0 34 ................................ TTTGGCCTGCTGGTCCGTATAGGCGGCGTTAAGC 39164 32 100.0 34 ................................ AAACAACGGTTTGATAGCCCCGTCGATACCCGAT 39098 32 100.0 35 ................................ CATGGCCATGTGGAAATATAAGTACGACGAAACGA 39031 32 100.0 34 ................................ GTAAAATGGTAATCACCGCTACGAAAGAAAGCGA 38965 32 100.0 34 ................................ AGGCTCATGAAGTATATGAACAAGATGAATTTAC 38899 32 100.0 34 ................................ CCTGCGGGCACGGCCGATAAGATCCGCAAAGTAT 38833 32 100.0 34 ................................ GAAACAAAGTAAAGTAGAAGAAAGTAGAGGAAAG 38767 32 100.0 33 ................................ TTTAAGCAGTTCATTCCCTGCACAATAATTTGA 38702 32 100.0 34 ................................ GATACCGCTTATACTATGTGGGTCGACCTCGGCA 38636 32 100.0 34 ................................ ATCCATATCTGGGATAAACACGTTTACATTTTTT 38570 32 100.0 34 ................................ CATATCAGGAATCGAACCATTTCTCATGACCTGT 38504 32 100.0 34 ................................ TTCACATTTCAAAACAAACCCAAAGGAGAGAAGA 38438 32 100.0 34 ................................ ATGTAAGGATTGGTCGAATCTGGTTGCTGCCACT 38372 32 100.0 35 ................................ CAGCTGCATACTAAGGTTTTGGATTTCCAGCCAGT 38305 32 100.0 35 ................................ AACACATCATCAGATGTGAACACACCTGTCTTTGT 38238 32 100.0 35 ................................ ATTAATCTGGTGTATCAGATTGCGTCGAATTTTAG 38171 32 100.0 35 ................................ CGCAAAGAACGGACTAAAGAAGTATTGACGTTTCC 38104 32 100.0 36 ................................ CGAAATATACCCATTGGTACAAGACATTAGTTTTAG 38036 32 100.0 35 ................................ GCCGGAGGCGACAGAGGCCGTGATAATCGCCGGCA 37969 32 96.9 34 .........C...................... GTATGAATCGGCCCGGCTGGTGCAAAACATCTCC 37903 32 96.9 34 .........C...................... GTATGAATCGGCCCGGCTGGTGCAAAACATCTCC 37837 32 84.4 0 .........CGT.T.................G | ========== ====== ====== ====== ================================ ==================================== ================== 53 32 99.6 34 GTCACCCTCTACGCGAGGGTGTGGATTGAAAT # Left flank : AGCAGGAAGCGAGGTGGCAGACGAAATGTATATTTTAGTTTCGTACGATATCAGTACAAATTCAGCGGCAGGAAAACGCCGTCTGCGGACGGCTGCTAAAATCTGTTTAAACTATGGGCAGCGCGTTCAGAACTCTGTATTTGAGTGCGAAGTAGACGAAGGACAATACTTGCAGCTGAAACACCAATTACATGAGGTGATTGACGAATCTGTCGATAACTTACGTTTCTATCGCCTCGGGAAAAACTATAAAAAGACCGTAGAATCCATTGGCGTCGACAAAGGATATGACATAGAAGGCCCGTTGATTCTGTAGCGGCTTTCCGGCAATGGAAATAGGCTGTGCGAATCATAAGCATCGGATATATACCAGGGAGATTCGCACTCAAAAGAGCAATAGTTTGTCGAAATAGACAGCGATTTTTAGCAAATCAGCTGAATAAAGTTGTATAGGATTCTATATATGCTACGTTTCGGAGTAAGAGATACCAAATGTAGCT # Right flank : TTATGGTACTGGCGGTTATACGGCCTTTTTTTGGTATCGCCCTTCGTACGAAGATAGTTCCTGTATTTTCGTATGTATCATAACTGCGATTTGTATATTTTATAGTATACAAAATATATACTTGTTACGTATACAAGGGAATATATGCGATTGGGTCAGGAAAATATTTCCTGTATAAATACAAAAAAAGCCTATGGTAATAAGAGAAAGTATGGTATTATTAAAATCATACAAATGTATTTATAGGAGGGATTTTTTATGGAATTGCTTAGGAATTGGAAGGTGCACCTATTTGCGTTCATTATCATCATTATTGCTGAACTGATAGGCGTTCATTCTTTCGGTCTCGTCGTATTTTTACCGCTGCTGTATGCACTGGTAATGGGCGGCATCCTCAGTTATCCGTCTCTTGGAGTCATGAATGAAAAAATGATGGATGTAGCCGGCAAGGTCATGCCGATTGCCATGCTGGTGCTGATCGTAAAGATTGGTCTCGGCAT # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:0, 3:3, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCACCCTCTACGCGAGGGTGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: F [8,7] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-5.10,-8.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [55.0-66.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : NA // Array 2 53647-49881 **** Predicted by CRISPRDetect 2.4 *** >NZ_SJOT01000008.1 Megasphaera sp. SW808 8, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ==================================== ================== 53646 32 100.0 34 ................................ TTTGAGGGCGTCCCGGTAAGACTGGCCGAGGTCG 53580 32 100.0 35 ................................ TTTTTCCAGCCGTTTTATCAGACCGTTCAGCGTAT 53513 32 100.0 34 ................................ TAAAATACCCGTTATCAATTTTAATCCGCAGGAA 53447 32 100.0 34 ................................ TTTTATGACAACGGCCTGGAACGCCGATGTTTGA 53381 32 100.0 34 ................................ CCTTAGTTTCCATGAAGAAACCTCTACGAAAACG 53315 32 100.0 34 ................................ CCCATGCGCCACTGGTATCCGGCGTGGATCAGGG 53249 32 100.0 36 ................................ CGCCATTTTTTGATTTATACGCACTTACCATTTTGC 53181 32 100.0 34 ................................ GTCATATGCGATGTAGTTTTCCATGGTATCGTCA 53115 32 100.0 36 ................................ CTCTATCCCAAGCTCAAGAAGTTCATGCACTTCTTG 53047 32 100.0 35 ................................ TATACAGTGAATCACCTTATCGCCCCTAATCCAGA 52980 32 100.0 35 ................................ GTCCGACGGCTGTTAAGGTGCAAGCGGATGTTATC 52913 32 100.0 35 ................................ CGCTATACCTTGGCGGATATGACCCTGAACGACAA 52846 32 100.0 35 ................................ TGTCGTGATATTTCCTGACCGCGTAATCTGAATAT 52779 32 100.0 35 ................................ TTGAATCAACTGCGGAATCAACGTCTGCGTGTAGA 52712 32 100.0 35 ................................ CCTGTTACGGTGGGCCGATGGTTCAACAAAGGGAG 52645 32 100.0 34 ................................ GGCAAAATGTCAAGTAAGCGAGGAAAAAGACCAT 52579 32 100.0 34 ................................ ACATACTGCCAGTGGTTCTGTTACATCTACTGGC 52513 32 100.0 35 ................................ TTTCTGGTCATCCGTATTAGATTATTGGCAAGCAA 52446 32 100.0 34 ................................ CATCTGTTACTGTTTCGTTAATTGTATTTGGCAT 52380 32 100.0 34 ................................ AAATTACAACTGCAAAATGAAAAATCTAAAGATA 52314 32 100.0 34 ................................ TCGTGATATATTCAATGCAGGCCGCCGTCATGTG 52248 32 100.0 34 ................................ CAAACAGGTACGACTGATATGCCGCCGGATTATA 52182 32 100.0 34 ................................ CGTACAATCAGGTCTAGTTTTACGGCGCTGTCGT 52116 32 100.0 36 ................................ CAGAAGTGAAGGGCTATTAATTACCACGTTAGAAGG 52048 32 100.0 35 ................................ TGGAAGACTCGCTGAACATTTAGGAGGACGCCACG 51981 32 100.0 34 ................................ CGATACGGCACCGAAGCTGTATAACCTGTTCATG 51915 32 100.0 35 ................................ TGCTGGCAAGCTATTTTCAGCAGTAGGCACGAACA 51848 32 100.0 34 ................................ GTGCAGGACCATGCCGACCGCTTCCGCTCGGCCG 51782 32 100.0 35 ................................ AAGAAGGCCTTGACTGGGATGCGGTTGTCGCCGCC 51715 32 100.0 34 ................................ CGCCGGTTCCGCCGTTGGCTGCTTCGCATATATC 51649 32 100.0 34 ................................ AGTTGTTGCGCTTACATTAGCGTTCAAGTCTTCT 51583 32 100.0 34 ................................ CATGAACAGATAACATAACACCCGTCTAAATGCG 51517 32 100.0 35 ................................ GCTTGACGGCTGACTGCACGGGTCTTTCCGTTGAC 51450 32 100.0 35 ................................ CCAGAAAAACAATGCTCTCTGGGGAACGCTCCTGA 51383 32 100.0 34 ................................ TGGTATTGCTTATCCAGTTCGCGCCGAATCTCTC 51317 32 100.0 34 ................................ ATCTGGCACCACCCCCAGTTCCTTTGCCATCGGT 51251 32 100.0 35 ................................ ATTATATCACAAGAAAGGACGTAGTACCATGAACG 51184 32 100.0 36 ................................ CTGTACAAACATGGCCGCCGTTCCAAATACGCCATC 51116 32 100.0 35 ................................ GACAACATGTGGACGCTCAGCATTGGTGCAAAAGC 51049 32 100.0 34 ................................ CTCTATCAGCTCCAATAATTCGCCGTGGTAGTTG 50983 32 100.0 35 ................................ AGCATTGATGATTTGTTTGAGTAAGGGGGCCAGGC 50916 32 100.0 35 ................................ CGAGCCCTTTTTGTACAACGACATGACATGGAGAC 50849 32 100.0 35 ................................ CCGGTATGACACCGCAGCGCATAATCAAGACGGGT 50782 32 100.0 36 ................................ AAGAAGGCCTTGACTGGGATGCGGTTGTCGCCGCCG 50714 32 100.0 35 ................................ GCGACGAAAATCTGATGCCTCAGATTAATATTACA 50647 32 100.0 35 ................................ TCTATCTGTATGAGACGCGGCCTTTTCCCTGAACC 50580 32 100.0 35 ................................ TGGAAGGAATGGACGGGCCGCAAGAATGGCAGAAA 50513 32 100.0 35 ................................ GGATTGCACTTACCTGGCGTGATAACCGTATCGCC 50446 32 100.0 35 ................................ CTCAAGAAGCTGGCAGCTCTCCAAAAAGGTAATGC 50379 32 100.0 35 ................................ TCACCGTCGTGGTCATTGGGGGCGGAATATACCTC 50312 32 100.0 35 ................................ TCCGTACAATCCAGAATTTGTGCGGCGGATAAAGC 50245 32 100.0 35 ................................ CGACAGAACTCAATCCGCAAGGGGACGGCATACAA 50178 32 100.0 35 ................................ GGTATTGTAGATCGCTTTATAGCTTTGCAATGCAA 50111 32 100.0 34 ................................ CCGCTCGCACATGCCTAAGTTGCTTATCTTTTTA 50045 32 100.0 34 ................................ ATAGACGATTTCATTTGCCAGTTCCCTGGCTGTT 49979 32 100.0 35 ................................ GACGATGACGACATCGACGATACGGACGATATTTT 49912 32 93.8 0 ..................A...........G. | ========== ====== ====== ====== ================================ ==================================== ================== 57 32 99.9 35 GTCACCCTCCGTGTGAGGGTGTGGATTGAAAT # Left flank : TATTGTCGACGTCAAAGGCGCGCTGGAGCAAATTCCCTATCCGGAACAGGCTGAAGGCAGCCTTGTCATCCAAACAGAGGATCCCTTGGCCGACTGGAATACCGGCACGTTCCGTCTGACCGTTCGGCAGGGACGCGGCTCCGTAGAACGGACGGAGCAGGAGAAGCCGGACGCCGTCATGCCTGTCGGTACCCTAGCGCTGCTGGTCTTCGGCGCGATGGACCCAGCGGACCTAGCATTCAATGAAAAACTATCCGGCAGCGACAAAGCCTTGCAAACCTTAGGAACGTTTTTCCCGACAGAAAAATGCTACATTAACGAATGGTATTAAACGATAAGTACGTGCGAATGGCAAGCATCGGATAGATACCAGGGAGATTCGCACTCAAAAGAGCAATATATTGTCAAAATAGATCGCGATTTTCAGCAAATCAGCTGGATAAAGTCGTGTCAGATTCTATATATGCTGCGTTTTGGAGTAATATATACCAAATGTAGCT # Right flank : CATGCGGCATCATTAGATATATTGTCAGTTTTTTGCCAGTTCAAGGCTATCAAAATATTATACATAATAAATCAAAATACCATATGTAGATATTTTTTATTAGGTATCTATCTTGAAGGTATGGTATAATCAATCATATAGAAGTGAAACGGAATATATAGGTATAGCTAATTATTTTTTAGGATTGGGACGCTATGGATATTGAATGGGATTTGCTGCTGGCGCATTGGGATGCAGAACTGAAGAAAGGGCAGTATATCAAAGACCATGTGAGGAATACGGCTGAGTATATGGCTCGTATAGGTAAGTCTCTTGGGCTGGAATCTATCTGTATTCTTATCGGCCTTCTTCATGACGCAGGAAAGGTGAATCGTGATTGGCAGAAATATATCCGCGGCGAAGCGGCGTCGGGCGGGGATCACGCTGGCGTCGGAGCTTGGTATGTCCAGCATGTGTTGTATAAATATGTAAATAATTCCGTACCTGCCGATACGTATCGA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:0, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCACCCTCCGTGTGAGGGTGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: F [9,6] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-4.20,-4.30] Score: 0/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [66.7-66.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,4.91 Confidence: HIGH] # Array family : NA //