Array 1 955383-956569 **** Predicted by CRISPRDetect 2.4 *** >NZ_PKPF01000002.1 Salmonella enterica subsp. enterica serovar Hadar strain PIR00503 contig02_PIR00503, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 955383 29 100.0 32 ............................. AACTTAACTCCAGCATTCTGGCAATTGTTGCG 955444 29 100.0 32 ............................. GCGACATCAAAATCTATTTTTCATTCTATCTG 955505 29 100.0 32 ............................. GCATCGAACCGCTTATCCGTCTGTACCCACTC 955566 29 100.0 32 ............................. CTTTCATTGCGCAGGGTATGCAGTCGGTTTCC 955627 29 100.0 32 ............................. CGTCAGCGCGGTATTGAGGCCGGGGACCGCCC 955688 29 100.0 32 ............................. AACAGGAACAGGAAAAAAAAGATTTGTCCGGT 955749 29 100.0 32 ............................. AATGGGATGTTCTCGATAATGGCGACGACGAA 955810 29 100.0 32 ............................. CGGTCATTTTAAAGAATCCCGTTAAACAACAC 955871 29 100.0 32 ............................. GACATTTCAGTTTTGAGCATGAACCTGATTCA 955932 29 100.0 32 ............................. CAGATCCTCAACGGTCAGGTTGTTTAGTTCCT 955993 29 100.0 32 ............................. AAAACCGTACAACAGACAAAATATAAATATTG 956054 29 100.0 32 ............................. CGGAGGATGGAATATTTCCGAGGCTGGCGATT 956115 29 96.6 32 .............T............... ATGCCGGAACGCTGATGGCGTTTGACATGAGC 956176 29 100.0 32 ............................. AATTATTTCTGTGGCTGGGGTTTCGATTCGAT 956237 29 100.0 32 ............................. TTGACGGTGACGTCAGTGCCGAAGGCGAAATA 956298 29 100.0 32 ............................. CCAGCTTACGCTATTTACGACGTTATTGAGCA 956359 29 100.0 32 ............................. CCCCGATAGCGACGCTTCTGTAGTCACTGGCA 956420 29 100.0 32 ............................. GACGAGTTCTGGAAATGGTTAGCTGATAAAGA 956481 29 100.0 32 ............................. CGTTCATCGGCAGCGTCACGCAATATGAAGAT 956542 28 82.8 0 ...............A.AA....-.G... | ========== ====== ====== ====== ============================= ================================ ================== 20 29 99.0 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATTGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTCCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGACAAAAAGTAGTTTATAAACAATTATATCCGTTTAGT # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTGATACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGATTAAGCCTGTTGGTCGAGGATGAGTCTACGTCGATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGTGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGGAAAATAAAAAAATTGTCGCGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGACCCCCTGCCGATTGG # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 973251-974990 **** Predicted by CRISPRDetect 2.4 *** >NZ_PKPF01000002.1 Salmonella enterica subsp. enterica serovar Hadar strain PIR00503 contig02_PIR00503, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 973251 29 100.0 32 ............................. CGACGCTTCCATCGTCTGGCATTCCTGTTCGT 973312 29 100.0 32 ............................. CCCGCGTATTAACAACGACGAGCAGGGCGTGC 973373 29 100.0 32 ............................. GTTGCGCAGCCATTGAGCTGCAAACGGATCAA 973434 29 100.0 32 ............................. CGCCCCCCGCATACAGCGAGAGACGGGCCATG 973495 29 100.0 32 ............................. CGCCGGGCGCGGGAGTCCCGGGCGATCCTCCC 973556 29 100.0 32 ............................. GCCCGAAATCAACTTGCAACATTTCAGTTGGC 973617 29 100.0 32 ............................. CATATGATTGACGACAATGAATTTTTTTTCAA 973678 29 100.0 32 ............................. ATAGTTCATCTCTGTTCTCCAGCGGTTTCTAT 973739 29 100.0 32 ............................. ACGGCATTATCACGGCTATTTCTCTGGAAATG 973800 29 100.0 32 ............................. GACAGGACTTACGACCGGCTGGACTACGCATC 973861 29 100.0 32 ............................. CCACAGCCGCCGCGACAATAAATTAACTCACT 973922 29 100.0 32 ............................. GCTGAGATAATTGCCGATCATCTTGAAGACAT 973983 29 100.0 32 ............................. AATGATGAGGGGCTGGCAACGTTTAGCGCCAC 974044 29 100.0 32 ............................. CTGGCCACTCAACAGGGAAATATCGCGTGCGC 974105 29 96.6 32 A............................ CCCATCAAGATAAACATCATAGCGAGCACCTG 974166 29 100.0 32 ............................. TTTGAAATCGCTATTCTTATTGCTGTAGCAGT 974227 29 100.0 32 ............................. CGTTAACTAAAACGAACAAAACAGGGAAATCA 974288 29 100.0 33 ............................. GCCGTGCGTCAGATCACCCCAAACGCTTTCTTT 974350 29 100.0 33 ............................. GCATTAGATTGCGTTGACGGTCACGTTCTTATC 974412 29 100.0 32 ............................. CGCCTCACTGATATTCTGCGGCGAGCTGAAAA 974473 29 100.0 32 ............................. CCGGAAAACTATCTCTATCGCAGGCTGGATAT 974534 29 100.0 32 ............................. TAAGTTACGCCAGTGCGGGCGTGTTGCTCATC 974595 29 100.0 32 ............................. GAGACGCCAGATGAATTCTGCGGGACAAGAGA 974656 29 100.0 32 ............................. AACGCAGGAGAACCAGCCGCCGGTCATCCTGC 974717 29 100.0 32 ............................. GTCTGACCAGTGGCGTGGGGGGATTGCAATTT 974778 29 100.0 32 ............................. CGTGGCTGGAGCAATGAACAGATTAAAGGGGT 974839 29 96.6 32 ............T................ AAGCCATTGACGCAACGGAAAACGCCAATGCT 974900 29 96.6 32 .................A........... GTATGATTTGGACATAGCTAATGATGTAAAGT 974961 29 100.0 0 ............................. | A [974988] ========== ====== ====== ====== ============================= ================================= ================== 29 29 99.6 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : CTTATTGAAGATGTTCTCGCGGCAGGGGAAATTCAACCGCCGTTACCTCCTGAAGATTCACAACCCATAGCGATCCCTCTTCCTGTTGCGTTGGGAGATTCCGGTCATCGGAGTACCTAACGATGAGTATGCTGGTTGTCGTTACCGAAAATGTTCCTCCTCGTCTGCGGGGGAGGCTGGCCGTCTGGTTACTGGAAATTCGAGCTGGTGTGTATGTTGGTGATGTTTCCACAAAGATCCGCGAGATGATATGGCAACAGGTTTCCGTTCTGGCAGATGAGGGAAATGTTGTTATGGCGTGGGCGACAAATACAGAATCAAGTTTTGAGTTTCAGACTTTTGGTGTAAATCGACGTATTCCGGTAGATCTTGATGGACTGCGATTGGTGTCGTTTCTACCTGTTGAAAATCAATAAGTTATAGATCTTTAAAAATTAGGAAAAGTTGGTGGGTTTTTTGTGCGCTAAAAAAGTATTTAAATTCAATTGGGTAGATTTAGA # Right flank : GTTTCAACAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCTGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [70.0-50.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //