Array 1 13338-13768 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAATKD010000013.1 Campylobacter coli strain 18QD2YX32C NODE_13_length_42616_cov_190.669, whole genome shotgun sequence Array_Orientation: Unconfirmed Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 13338 36 88.9 30 T............G..........GT.......... CTTTTGTATAAACAAGTTCTATGATGTAGT 13404 36 100.0 30 .................................... AATAATTTTAACTGCAGTTATAAGAAGTGA 13470 36 100.0 30 .................................... TATTTTTATAATAATTAATTTATTGGCAAT 13536 36 86.1 30 .......T..C..G..........GT.......... AAACAAGCTATAAAGCAAAAATTAGGTGTT 13602 36 100.0 30 .................................... AAGAATTGCTCTGATGAATATAAATTAAGA 13668 36 100.0 29 .................................... TATTAATTTAATATATATTTTGAGTATGC 13733 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 7 36 96.4 30 GTTTTAGCCTATTATTAATTGTTTACATGGTAAAAT # Left flank : TGGTGAAATGCAAACAAAGCGATGAAGTTTTTCAGGTGTTTTATAAAAAAGATGGGAAAATAAGATTGCTTAGAGTTAGCAATGTGCAAGCTTTAAATCATTTTGATAAACTTAAGGGTGTAATGACAAAAATAATTTTAGATAGTGGTTTCAAGCCTGATGAACAATGATGTCCAAATTTCACAAATTACTAATATCCCTTATTTCACTATTAGAGACTGGAAACAAAAAAAAGACAATTGGAGGGGAAAAATATATCTTTTTTTAAAAAACACTAATCAAGAAGAATTAAAAGAAATATTTTCAAATTCTATTAATTCTTCTAATACAGGTTTAAGTGATTCTAAAATTGCCAAAATTACAACAATTCCATTGCCAACGCTAAATACTTGGAAAAAGGATAAATCAACTTATAGAAAGAAAATCTATGATTTTTTGAAAAGTTGCGATGAAAGTAGATTAAGAAATATTTTCTTATGAATTTAAATATTTAAAAGCTA # Right flank : TAGACTTATCTCAAAAGCCTATTTTATCAATGTTTTTTCTTATTTTTTGAGCAAAAATATCTAAAACCATTTACGCTCTTCGTTTTCAATTAAGCTTAATTCACCTGAAGGACTTATACTGTATTTTTTAATTTCAAGTATTTTTCCTACCACTATAGATTCTTTATCATTTTTTCTAAAAACAACCATTTCATCTTCACTAAGGTTGTGATAATTGTTGTCGTGTTTTTTATAGGTTATTTTACTTCCTGAAGTATTAAAACCATGATAATAACAAATAATAGACTCTTTCATACCCTTTATTTTTACGCTAATTGGAGTATTTTTATACAATGACATACAAAAGTTATAATTTTCATTCATTTCAATGCCTTCTTTGGTTTCTCCATTTGATGTAGTTGCAGGGGTTTTATTTGGAAGTTTTTTTGTAGAAAAATCTGCTTTATAAATAGACACTGCATGGAATTTATTTTCTTTATCTACAAATAAATCAGTTCTTA # Questionable array : NO Score: 3.08 # Score Detail : 1:0, 2:0, 3:0, 4:0.82, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGCCTATTATTAATTGTTTACATGGTAAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:77.78%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.70,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: NA [4-5] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [80.0-76.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: NA [0,0 Confidence: NA] # Array family : NA // Array 1 53397-54158 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAATKD010000004.1 Campylobacter coli strain 18QD2YX32C NODE_4_length_145671_cov_217.617, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 53397 36 100.0 30 .................................... TAGTAGCTAAGAATAAAATAAGAAACACTG 53463 36 100.0 30 .................................... GAACTAACGCTGTTATATCAAATCTAGTTG 53529 36 100.0 30 .................................... AGTTTATCAGATATATTTTTAAGGTTTAGA 53595 36 100.0 30 .................................... GAAAGCAAAATCACAATAGCTACATTTAGC 53661 36 100.0 30 .................................... AAATCAGAACCACACTGTTTATCATCTTTT 53727 36 100.0 30 .................................... TAACATTTTTTCTTAATGTAGGCAATATAT 53793 36 100.0 30 .................................... AATTGTGATAATATATTAGAAGTCCCATAT 53859 36 100.0 30 .................................... AAATAGAATTAATTCCAAACAATAAAGCAA 53925 36 100.0 30 .................................... TGTTTTTATTATAGGAGATACAGGTGCAGG 53991 36 100.0 30 .................................... GATACAGGATTAATTGGAAAACCTGTGCCA 54057 36 100.0 30 .................................... AAGGAAATTATAAAAGATGTAATAGCAAAA 54123 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 12 36 100.0 30 GTTTTAGTCCCTTTTTAAATTTCTTTATGGTAAAAT # Left flank : AGCCGACATAAAACCAGGTAGACATATCAAAATAGCCAAGGCTAATGAAAAATTCATCATCGCCTTACCAGGTTTTCCTTACTCGGCTATGGTAATGTTTAATCTTTACGCAAGAGAGATTTTAAACTCTTGGTTACTTCAACCTAAAGACTATATTTGCAAAGCCTTTTTACAAGGAAGTTACAAGAAAAAAACACCTTATTTAGAATTTGTCGCTTGCAATATAGAGTTTAAAAATGGACGCATTTTAGCCAATCTTGAAGGTAAGAAAGAAGGCTCTAGTGCGATTATAAACAATCTTAACAATAAAGCTGCCCTTATGGTGGTACCAAAAGAATGTGAAATTTTAGAAAATAAAAGTTTAGTGGATATTATCTTTATGCCTTAAAATTATTTAAATAATTTTATTTCGATTTTAATCAACCCTAAATTTCAATAAGTTTCAAATTTGCAACCTCCTTTTGGAGTAATTAGCCCTAGCAGAGTTTCAATCCACTAGG # Right flank : TAGATATTTACCAGATAATGAAAATTTAGGGGTTTTTTGATGAAAAATAGCAAAAATTATGCTATAATCTCATAAGAAATTTAAAAAGGGACTAAAATAAAGAGTTTGCGGGACTCTGCGGGGTTACAATCCCCTAAAACCGCTTTTAAAATTCAAATAAATTTTGCTGATGATATTTTTCTTGTTTTTTGTTTATTTGAATTTCTTCATTATTTGAATTTTTATATTTAAATTCTCCATGACTATCTATATCAAAAAGCGTTAAATTGGTTTCGTTATTAACTTTTTCGTTAAAAACTATGCCACCAAGCAAAAGCTCCATTTTATCAAATTGCTTTTCAGTGATGATTAAAGCCCTTACATTTCCATAAGGTGGCAAAATCTTTTTTACATTTTCAATAGAACTTTTTGCAGAACTTAAACCCTTGCAAATACGCATATAAACACTAAATTGCAGCATAAAATAACCTAATTTTATAAGATTATTTCTAAATTTACTT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGTCCCTTTTTAAATTTCTTTATGGTAAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:77.78%AT] # Reference repeat match prediction: F [matched GTTTTAGTCCCTTTTTAAATTTCTTTATGGTAAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [60.0-76.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.5,0.27 Confidence: HIGH] # Array family : II-C [Matched known repeat from this family], //