Array 1 185732-186370 **** Predicted by CRISPRDetect 2.4 *** >NZ_VCWB02000004.1 Salmonella enterica subsp. enterica serovar Derby strain HIY0132 NODE_4_length_419116_cov_45.510515, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 185732 29 100.0 32 ............................. AGCACCTCGGGGACGATATTATTGGGACTATA 185793 29 96.6 32 A............................ GCGGTTTTATTCGGCAGGGCATTGAATTTAAT 185854 29 100.0 32 ............................. CCTGATCGCCAATATCTGAATATGATTTATTC 185915 29 100.0 33 ............................. TGCCGCGTGTCCGCCCCGTTGTCCAGCATCTGC 185977 29 100.0 32 ............................. AGTTGAGTAAAAAATCATGACATCACGCTACA 186038 29 100.0 32 ............................. CCGCGCTTATTGATCAGGAGAAAATAAAAAAA 186099 29 100.0 32 ............................. GGTCCGGTGTGGTCTGCCGAACCCGGCACCAG 186160 29 96.6 32 .................G........... ATGATGCGCAATTGCCGCCGTCGTCGTTGAGT 186221 29 96.6 32 .................G........... GAAGAGGCGAAGTCAGGGCGAGAGAGGCTTTG 186282 29 96.6 32 .................G........... TGTCGGTGTAAGTTGCTAAATACTCAGGTAAA 186343 28 82.8 0 ...............A.AA....-.G... | ========== ====== ====== ====== ============================= ================================= ================== 11 29 97.2 32 GTGTTCCCCGCGCCAGCCGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACTTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCTCTATCAATTTTACGGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGATAAAAAGTAGTTTATAAACAATGATATCCGTTTAGT # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCTGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTATACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAACGGATAAATCGTTGAAGGCCCGGCCAGGATTAAGCCTGTTGGTCGAGGATGAGTCTACGTCGATCTTGTTCGATACCGGCCCTGATGGCAATTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGAGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATTCGGCAATGACTTTTCTCGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTATCGAATGATGTACACGCGTGACCCCCTGCCGATTGG # Questionable array : NO Score: 6.12 # Score Detail : 1:0, 2:3, 3:0, 4:0.86, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCCGGGATAAACCG # Alternate repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.30,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 203122-205896 **** Predicted by CRISPRDetect 2.4 *** >NZ_VCWB02000004.1 Salmonella enterica subsp. enterica serovar Derby strain HIY0132 NODE_4_length_419116_cov_45.510515, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 203122 29 100.0 32 ............................. GGAACTGGTCAGCGGCGAAACAAAATCCGTGA 203183 29 100.0 32 ............................. CTATCGGCAATTTTCATCAGGCCCATTGCAAT 203244 29 100.0 32 ............................. GCGTCCAGCATTGCGCTAATAAAACTGGCCTG 203305 29 100.0 32 ............................. CCGGTCATAACAAGTGGCTTCGACGACCCTTT 203366 29 100.0 32 ............................. ATTGACGATTTTTCGTTAATAACGTCGTTATC 203427 29 100.0 32 ............................. TGTCGGTGTAAGTTGCTAAATACTCAGGTAAA 203488 29 100.0 32 ............................. CCCTCGCGCAAAAAGCGGTTGCTGTCGTTGAC 203549 29 100.0 32 ............................. AATCTGCCAACAGGCGCTCTGTGTATCGGCGC 203610 29 100.0 32 ............................. CTCCCTCTCCGCGTTTTTGCGTCGGCTGGGGA 203671 29 96.6 32 ............................T TTACGAGTTGGACGGTGAGTTTTATCACCGCA 203732 29 100.0 32 ............................. ATCCGCAGCATTACGTTGACGAACAAGCGAGA 203793 29 100.0 32 ............................. TTTCCATTTTAACACCTGCTTAATTAAGAGAT 203854 29 100.0 32 ............................. AGATTTTGCAGTGAACCACGACCGATGACGGA 203915 29 100.0 32 ............................. GCGTGTAAAATCACAGGCCGTCAGCCTAACGA 203976 29 100.0 32 ............................. CTGTCGCAAAAGCGGGTCTTATGTCTGCGGGT 204037 29 100.0 32 ............................. CCCCTGAGCGTTCAACGGCAAATAGCGGACAC 204098 29 100.0 32 ............................. TATACAGGGCGTTACCCCCAATCGAGCAGCGC 204159 29 100.0 32 ............................. GGGATCGGCGTCTGTGAAATTCTGTGGAATAC 204220 29 96.6 32 ............................A ATATTTAAAGATATGCAGAGAATTCTTTTGGC 204281 29 100.0 32 ............................. TGCGAATTTACCGTCGGCAAAACCGCGCTGAT 204342 29 100.0 32 ............................. CCAATATTCTCCTGATTATTCCGTTTATTTCC 204403 29 100.0 32 ............................. GGTTCACTCAGTGGAGCCTTCCACCTGATAAG 204464 29 100.0 32 ............................. ACGCGAACGCGGATATAAACTCAACAGCGCTC 204525 29 96.6 32 .............T............... AATTCCGTTACTATCTCGACGACCCGCGCGCG 204586 29 100.0 32 ............................. GGACGAAAACGACGTCCGTTGCGTGAAAACCC 204647 29 100.0 32 ............................. CGGGGTTTGCCAACGGGGGTTATCTGGTATTT 204708 29 100.0 32 ............................. TTGCGCGCTGAGCGGGCAGAGTTACAGGAACG 204769 29 100.0 32 ............................. GCCGTCGCGATGGCATCAGGCGTGGTGGCCGT 204830 29 100.0 32 ............................. ATCGAACAGATGCGTCATAGCGGCATGGGCGT 204891 29 100.0 32 ............................. CTGAATAAACCTGTCCAGCTTCTGCCACTCTT 204952 29 100.0 32 ............................. ATTACGGGATAATAGTTTTGGTAATGGGTTGC 205013 29 100.0 32 ............................. ATTACGGGATAATAGTTTTGGTAATGGGTTGC 205074 29 100.0 32 ............................. CCGCCAATATAAAGAACACTTTTATTTAAATA 205135 29 100.0 32 ............................. AATTCCGTTACTATCTCGACGACCCGCGCGCG 205196 29 100.0 32 ............................. GGACGAAAACGACGTCCGTTGCGTGAAAACCC 205257 29 100.0 32 ............................. AAAGCGAACGATGCGCTGAAAACGACAAAACA 205318 29 100.0 32 ............................. AATAACTCCGTCGAGGTTGAGCGCGTTCTGCA 205379 29 100.0 32 ............................. ACTGGTATATCACCAATCATGAGCAATTCTGG 205440 29 100.0 32 ............................. ATTTGCCGCTTCACTAAACCGCGCGCCGGTGC 205501 29 100.0 32 ............................. GTCTGGCCGGATGTGGTCGCGGGTTGGAACAG 205562 29 100.0 32 ............................. TACGACGTCGCCGGGGTAATCGGTTTTTTGTT 205623 29 100.0 32 ............................. ATCGCCGTGTTGGTCAAATATATGACGACTAA 205684 29 100.0 32 ............................. TTTATCGAAAATCAATGTTCAACTCATTGTTT 205745 29 96.6 32 ........G.................... CCGGAAAACTATCTCTATCGCAGGCTGGATAT 205806 29 100.0 32 ............................. TTCCAAAGGTACTCCCATATCTCCAGCCAACG 205867 29 96.6 0 ............T................ | A [205894] ========== ====== ====== ====== ============================= ================================ ================== 46 29 99.6 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCCCCTCAGCCTGCGTCGGATATGCTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGACTTGCCGTCTGGTTACTTGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGGGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTTAGATTAGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTAGATAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : GTTTCCCCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCTGCTTTATCGAAAACCTCTGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-46.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //