Array 1 361271-358937 **** Predicted by CRISPRDetect 2.4 *** >NZ_FYEK01000027.1 Thermoflexus hugenholtzii JAD2, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ============================================== ================== 361270 37 100.0 40 ..................................... CTTGTCGATCCAGCCCTCGCCCTCCGCCGCTGCGAACAGC 361193 37 100.0 42 ..................................... CCGCGATCCTTCCGGGCTCCGGCTCGGGGGGACCATGTTTAC 361114 37 100.0 39 ..................................... GCGCTGATAGGTGTAATCATGCGCCCCCATTGTGTAAGC 361038 37 100.0 42 ..................................... GGACAGAGCGGCGGTGATGACGGCATTCAGCACTGTGTAAAC 360959 37 100.0 46 ..................................... CACCAGGTCCCCGTAGTGGGAAGACCGAATTGGCGATTCGTATCAA 360876 37 100.0 44 ..................................... GAACCAGTTCCGAAGGGTGAGATACCGGCTTGCGGCTGGCTTTG 360795 37 100.0 41 ..................................... AGGTCTTCGCCGTCTCCAGGGGGCGGTGGCTTGTCGCCAAC 360717 37 100.0 45 ..................................... GATCTGCTCTTTCGCTTGTCCGAACATATTGCACCTCCTGTGCTG 360635 37 100.0 43 ..................................... GGGAGATCTTGATGATGATCGTCTCGCCCATGTCGCTTTCCTC 360555 37 100.0 42 ..................................... TCGGGTTCGGATCATCATATCCAAAAACCCCCTTCGGATCTC 360476 37 100.0 40 ..................................... CGGGTCCTCCAGAAGATCAACCGCGTGCTGCTCACAAACT 360399 37 100.0 41 ..................................... CTGATTTTGCGATCGCGCGCGATCATGCTCGAGCGATCGAG 360321 37 100.0 45 ..................................... GCCCACGAGCAGGGAGGGGGCGATGATAAGCCCGGCCGCCATGGC 360239 37 100.0 39 ..................................... TGGACCAACGCTGCGCCGTGGGAGGGGTATGCACGAGGG 360163 37 100.0 44 ..................................... CCGGCTTCCCTCATAGGAACGATACGGAAGTTCGATAAAAACGC 360082 37 100.0 38 ..................................... CAATCTTCGGGCTCGAGTTCCCATTCAATATGGACCAA 360007 37 100.0 44 ..................................... GCCGCGATTACAGTGACCACTGGGTATCCCAAGCGTTCACCCAA 359926 37 100.0 45 ..................................... GGCCTCGCTGGCCCTCCAAAGCTCCGTCGGGTGGCTCACCACCCG 359844 37 100.0 40 ..................................... TCTTCTTCTGGGATTTTGATCCCTAGGGCTTCGAGAGCGC 359767 37 100.0 44 ..................................... GTGGCTGTGATAGTGGTAGTTGCGGGTCTCATGAATGACGCGGG 359686 37 100.0 43 ..................................... ACGATGGCTTTGGCCTGTTCGGCATATTGCGCAACATTTTTGA 359606 37 100.0 40 ..................................... CGGAACAGAGACCGACTTTCCGCTGGCCCTCAGTGAAAGT 359529 37 100.0 46 ..................................... AGGACGCCCAGCTTCCGCCCCCTCCCGCGCTCGCCAACTACAAGTG 359446 37 100.0 41 ..................................... CTGTAGGTCGGAAGGGTGGGGATGGTGAAGGTCATCCCCAC 359368 37 100.0 44 ..................................... TTGTCCTCCAGAAGGAGGGCCAGGGAGTTCTGGTCCATGCCCCC 359287 37 100.0 44 ..................................... TCCAGACTTCGAGGGGCCATTCTTCTCACCTCCGGACTTAAATC 359206 37 100.0 37 ..................................... CTCTCCACCGCGTGCTGGACGGAGATTTTCTCCTCAT 359132 37 97.3 44 ..................................A.. CGATACCTCTACGCCTGAAAGGAGGGGAGGCCAAAGCGATCCCG 359051 37 97.3 42 ...........................A......... TGATTTTGCCCGCCCTTTTGACCGGGCTATTCCCCCGTGTGG 358972 36 81.1 0 .......C.C.C..G..T...............-..A | ========== ====== ====== ====== ===================================== ============================================== ================== 30 37 99.2 42 CTTGCAGTGACGAGACCCGTTTTCAGGGGATTGCGAC # Left flank : ACTGGAGGAGCGCCTGGTGGACCGGCTGGAGGAGCGGATCCGCCGGGTGGTGGAGGCCCGTGAAGACGCGGTGCGGATTTATACGCTGTGCGCCGCGTGCCAGCGACGCATCCGGGGCCTCGGCGTGTCCTCCCTCCGAGAGGACCCGGACGTGTGGATTATCTAAAGCTTCCGCGAATCCCTTCGACCTCGCAAAACCCGGGGGGATTCGCGGAAATTTGCTAAAACAAACCGAAAGGGGCCGCCAGATCTGGCGTTCATCGGGCCGCGCACACCCAGATGTGGTGGGTCCGGGAGGCGAGGGAGAGCCCCTTTTCCGCGAATCCCGGATCAGGGCGAAAACCCGGGGGGATTCGCGGCCGGTTAGAACGCTAGGAAAAGAAGCTTGACAGATCCGCAAGAGGACGCTATCATAGGAACCGAAGTCAGGTGGAGGTGGGGGGGAAGGAAGAGGTGAGGAGACGGTAGAGTGGGGAAGAAAAGAAAAACCCTCCGCCGCC # Right flank : AACCGGATTGAGAGCTGGAAATTCGACCTCCGACCCCTTAGTCCTTGTTCCGAAAGGAGAGCGGGCAATGGCTGACCTGGAAAGGCGTCTCAAGGAGTGGCAGGCGGCCGGCCTGATCACAGCGGAGCAGGCAGAGGCGATCGCCGCCTTCGAAGCGCAGGCCGAACGGCGACGCATATCCCTTCGCAACCTCCTGATCTACCTCGGCGCCTTCTTCATCCTGACCAGCCTCTGCCTCACAGTAGCCAATCTGGACATCGCCGGGCTGTGGAAGGCGCTGCCCCCATGGGGCCGGATGCTCATCGTGGCCGCCCCCACCATGACCCTGTGGATCGCAGGCGCCTTGCTGCGCCGCCCGGACAGCCCGATACGGACCCGCGGCGCCCGGGCATGCTGGATGGCGGCCGCATGGATGACCGCCCTCACCATCGCGGTGACCCTTAACGAATGGCCCATCTCCGAAACTCCTCCCGTTCGCCCAGAGCTCAGCCGTTTTGCGC # Questionable array : NO Score: 3.22 # Score Detail : 1:0, 2:0, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTGCAGTGACGAGACCCGTTTTCAGGGGATTGCGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [9,7] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-3.30,-5.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [9-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [48.3-41.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,0.78 Confidence: MEDIUM] # Array family : NA // Array 1 4011-5688 **** Predicted by CRISPRDetect 2.4 *** >NZ_FYEK01000018.1 Thermoflexus hugenholtzii JAD2, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ============================================= ================== 4011 37 100.0 39 ..................................... CTGACATTCCTTTGCTGGCGTCGGACCAATCGCATCCGA 4087 37 100.0 41 ..................................... CCGTTGGAGCTTGCGGACTACCTGGTCCGATTCCTCTCCCA 4165 37 100.0 42 ..................................... CTGTTCTCGAGGATAACCCTCACCCATCCGGGGAGAATAACC 4244 37 100.0 41 ..................................... GGTTGCGAACCAGCAACTCTCCTACGACAGAAAGACCCAGA 4322 37 100.0 40 ..................................... TTACCACCTCCTTTTCGAGTGTCACTTCTCTTCCTCAGCG 4399 37 100.0 41 ..................................... GGGACAACGCTCCGGCTCGGGCTTCGGTTCAGGCTCTTCCC 4477 37 100.0 41 ..................................... CGTTAACGATCCCGTAACGGGTGGCCACGTTGTAGGATCGC 4555 37 100.0 41 ..................................... TCAATTTGCGGCCAGGCCAAATGGTTGTCCCGATGGGCCTG 4633 37 100.0 43 ..................................... GCCCGCTCCTCCTTCTTTATGAAGACTTCTTCTAAACTACCCA 4713 37 100.0 43 ..................................... AAGATCGATGGCCTCCTCGTTGGTCGCAAACAATAGGGCTAAC 4793 37 100.0 43 ..................................... GCTTTCTTTCCCTCCTCCTTCGATAGGGCCGCCATAAGAGCGG 4873 37 100.0 41 ..................................... GTGTTCTGGGACGACGTAGATCTCACCATCTTCCCTGTTGA 4951 37 100.0 42 ..................................... GCGCGAGGGCCGGAGGGGTCAATCCAGATTTCATGTAGGCGA 5030 37 100.0 40 ..................................... TTGATTTGCTCGATTCCTCCCTTAGAAAAGCCAGGGCCAG 5107 37 100.0 42 ..................................... GCCTTCTCAACGTCATCCCAGCCCGGGAGGGACTCCCGGACC 5186 37 100.0 39 ..................................... CTATTCAGTCGCTTCCCAGGCCGCCGCCAAGAGGCCTGG 5262 37 100.0 45 ..................................... ACCCGTCCAATTCCGTGGAGCTCGAGATGCCGGAGGGCAATTATG 5344 37 100.0 39 ..................................... GGGATCCAGGGCGCCCCGAGCCCGAGGAGGCCATCCAGA 5420 37 100.0 43 ..................................... TTGCACAAAATATTTAGGGCCCACCTCTCGAGCTTGTCCGCGT 5500 37 100.0 37 ..................................... GCCTCGGGCCGGCCCAGGGCCATGCCCCAGGAGATAA 5574 37 100.0 42 ..................................... GCGATCATGAGGACCAGATGGTTGTGCTCCCGCTTTGTGATC 5653 36 81.1 0 ...............T.T.-....G......G.T..G | ========== ====== ====== ====== ===================================== ============================================= ================== 22 37 99.1 41 CTTGCAGTGCTGAGACCCGTTTTCAGGGGATTGCGAC # Left flank : GCTGGAGAAGACGGTGCGCTGGTATGTGGAGAACGAGTGGTGGTGGCGGAAGATCAAATCGGGGGAGTATCGGGAATACTACCGGCGCCAGTATGCGGAACGCCTGGCCCGAAGCCGGCCCGCCTTCTCCGGGTGACCGGTGTCGCCAGAGGTGGGGATACTCTCATTATTCCGCGAATCGGCGGAGAGGGGCGAAAACCGGGGGGATTCGCGGAAATTCGATCCAACCAACCGAAAGGACCCGCCAGATCTGGCGTTCATCGGGTTGTGCATGTCCAGATGTGGGGGGTCCGGGAGGCGATGGAGGGCGCCTTTTCCGCGAATCCCGGATCGGGGCGAAAACCCGGGGGGATTCGCGGCTGGTTAGAACGGTAGGAAAAGAAGCTTGACAGATCCACAGGAAGAGGCTATCATGGAAACCGAAGTCGGGTGGAAGATGGGGGGAAGGAAGAGGCGAGGGGGTGGCAGAGAGGGAAAGAAAAGAAAAACCTTCCTCCGCC # Right flank : GGGGGGATTTCCTCAAGCGAAGGGGGGATGGGGCACAGCACTAATGCGCCCCTGCGGTTTTCGTCGCCTTTCATCGCCGTCGAATCCGGAGGGCCAGCCGGGAGGTGAGGAGATGTGGAAGACTTCTTCGATCCCGAGGACCTTCACGAGCTGCGGGAGCAGATGGAACGGCTAAAGGAATTCCGCCGACGCCGCAAGGACCACGAGGCCTTGCGCCGTCGGGTGCCAGCAGATCCTCCAGATGCGCTCTGTCCCCTGTGGAACCCGCAAGCCCGTCCGCTCGGAACGCTGATCCCCTGCCTCCGCGCCTTCCGCTCGGCCTTCCTCTCGAGGAGCCGAGGCTTGCCTCCGGCGCCATGGGGAGCGACAGAGGGGGCGATGACGCCGATCACGCTCCCATGCGCCCTTTGTCGCTCGACGTTCCTTCCTCCCGCCCGTCCGCCGGATCTCACTCCGCTTCCATGATCAGGCGCACGGCCATGGTCCGCTCCACGCCCCGC # Questionable array : NO Score: 3.21 # Score Detail : 1:0, 2:0, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTGCAGTGCTGAGACCCGTTTTCAGGGGATTGCGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,10] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-5.30,-3.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [41.7-38.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0.37 Confidence: MEDIUM] # Array family : NA // Array 1 18622-23331 **** Predicted by CRISPRDetect 2.4 *** >NZ_FYEK01000075.1 Thermoflexus hugenholtzii JAD2, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ======================================== ================== 18622 30 100.0 38 .............................. CATGCTCCTCAAGCCCCAGAGATAAGAGCTCCACGTGG 18690 30 100.0 37 .............................. GTGGATTCGAATGGGGCTATGGGGGTAGTGGGCCCGC 18757 30 100.0 37 .............................. GGGAGAGATCCTGGCAGGGAAAGGAAGCCCAAGCCAG 18824 30 100.0 35 .............................. GCGATCCACAACCGCTGTCCGGGGTGGATGTCCAG 18889 30 100.0 37 .............................. ATTTTTTCAGGAGCGCGGCGGCGTATTCTTCCGCAAG 18956 30 100.0 36 .............................. GCCTCCGTTTTCAAGGAGGGTGTATGCTGGCGCGGC 19022 30 100.0 38 .............................. CCTCCTTTTTTGGGTTTTGCCCGGCCTCCCCGGCCGGG 19090 30 100.0 38 .............................. CGTGGGGATCTCCACGCCCGCGATCTCGATGCGCTCCT 19158 30 100.0 36 .............................. GACTCTGGAAAAGCGCAACCCCAGCCGACTCCGACC 19224 30 100.0 36 .............................. AACTGCGGCCGCCAGGATCCCGAAGACGACGGCCTC 19290 30 100.0 38 .............................. TCGAAGATGTAATAATATGCGTGCGGGGCGCCATAGCG 19358 30 100.0 37 .............................. ACAGATCCTGCAGCCGCCGCAGGATCCGGCTGGCGGG 19425 30 100.0 36 .............................. CTGGTCGTGGTGGAGAATGTCGCCGGCCTGCTGAAG 19491 30 100.0 36 .............................. CAAGAAGTTCTCCCGAACCCACCCTTCCTCTTCCCT 19557 30 100.0 35 .............................. GTCTTCTGGGTCGAGTTCCCACTCGATATGAACAA 19622 30 100.0 36 .............................. CATAGAAGAAACCTCCGGTTGGTAGCCAACACGTGG 19688 30 100.0 36 .............................. CACGCTCTTGATGGCGGCGGAGGAGGCGGCCCTCTG 19754 30 100.0 37 .............................. GGAGGATTAAAGACAGAGACTTTCTCCCATCCTGAGT 19821 30 100.0 36 .............................. CAAAGCTCAGGAAAGCCACCGCATCCCACGGGATGC 19887 30 100.0 37 .............................. TATCCTGTTCAGGAGGTGGAAGCGGAAATGGAAACGA 19954 30 100.0 38 .............................. CTTTTTATCACCAAAATCTTTTTGTTTTCGATCACTAG 20022 30 100.0 37 .............................. GGTTGTAGATGTAGAGCGCCATATCCGCCATGCTCGC 20089 30 100.0 36 .............................. ACAACTTGGAAATCATCATCATTGGGCTTGAAGATC 20155 30 100.0 36 .............................. CAGATCTCGATGCTCCCCTCGGAGTTGGAGACATAA 20221 30 100.0 37 .............................. ACCAGGTCCATCATTTGGGCTTCCTGTGGCTGGACGG 20288 30 100.0 38 .............................. TATGCCACTCTCCCCCAGGTTGCGGTGGGCTCAATCCA 20356 30 100.0 38 .............................. AAGGATGGAGGCCATCATGCCTCCGCCTCCTCGGCTCC 20424 30 100.0 36 .............................. ATTGGGCTCCGGAGGACCACGATGGCAGCCTCATCC 20490 30 96.7 36 ............................G. CAACGATGGGGCGGGAAATCGTGTTTTCCCGCACCT 20556 30 100.0 36 .............................. GCGATCCAGGCAGCCCGCAGGCGGGACCGGACCTCC 20622 30 100.0 36 .............................. CGAGAATCAAAATAGAGATGCCCTCGGGGGAAAGGC 20688 30 100.0 37 .............................. GGTGCACGTGAGGCAGGCCAAAGGATGGAAATTGATC 20755 30 100.0 39 .............................. TCGCGGCGGCGGCGACGGTGGTGTAGAGATTAAAGATGA 20824 30 100.0 40 .............................. GGCGGAGAAGATCCGGACGAGCCAGGGCCTCATGAACTGA 20894 30 100.0 36 .............................. CTCAGATCGCATATCAGCGGGGAGGCCTTCGCGACC 20960 30 100.0 36 .............................. GTAATACTCGTGGCCCTCTGGGGCAGAGGACTCATC 21026 30 100.0 38 .............................. CCGGCCCGACCATTTCGGCCCCTTCGGGCCTCTTCAGG 21094 30 100.0 38 .............................. AATTGCACGAGATCGTGGGGCGGCCTCCGGTCTGCCGC 21162 30 100.0 37 .............................. ACTCCTGGGGGCCCGAACAAAACGGCCCCAACGATTC 21229 30 100.0 36 .............................. AGGAGGGTGGGCCACTCCCCCGGGCGGGAATTGAAC 21295 30 100.0 38 .............................. GGGCCCACCGGAGCTCCTCGTCCGGGATCTCGGGGACC 21363 30 100.0 36 .............................. GGAGGTCATCGGGCTGCTCACGGCGGACGGCGCCCA 21429 30 100.0 37 .............................. TGGACTGCAGATCGCTGTGCGCGGACAGGATAGCCAG 21496 30 100.0 37 .............................. TCTTCAGTCCCCTTTGGCCAGGATGTGCGAATTGAAC 21563 30 93.3 38 ..........T...T............... TCTTCCCCCACCACGCTGACCGCTGTGCTCTCCACAAC 21631 30 100.0 37 .............................. GGCCGCCGGGGTCTCCATCGTCCACCTCCTTCTTGTG 21698 30 100.0 38 .............................. GGCGGCGAAGGGGGCATAGGGCTGCCCGCTCGGATCCC 21766 30 100.0 36 .............................. GGCGATGAGGTCGGTCATCGTGGCGCGCGGCATTGA 21832 30 100.0 36 .............................. CGCGCTGCGTCGCGCTGGCCCGGGAAATCCGCTCCA 21898 30 100.0 37 .............................. CTCGATTTCGGTGTTGTGCGCACGGACAAAACAAAAG 21965 30 96.7 35 A............................. TCTGGATACGCGCAGACGTGTATCAAGTTGCGCAC 22030 30 100.0 38 .............................. AAGAAGGAAAAATAGCTCTGCCGCATGGCCACCTCCGG 22098 30 96.7 37 A............................. CGTCTCGGGATGGAAGAAGCGTCCTCCCTCGGCCCGC 22165 30 96.7 37 A............................. TGCTTTCCTCCTTTTGGGGGATCTCCCGGAGGATCTC 22232 30 96.7 35 A............................. AGAGGCGTTATCCGCGAGCCCTGTGTCCAGGCTGG 22297 30 96.7 37 C............................. TAATGCCTCGGGAAATTGATCGGGCCACCAGGGACAG 22364 30 100.0 35 .............................. CCAGATCGGAGTGCTGGAGCAGCCACTCCTCACCA 22429 30 100.0 37 .............................. GGATCCAGATCCACCGTGGCCGAATCCACCGTGGGCA 22496 30 100.0 36 .............................. TACGGAAAAGCCGAACAGACCAGCGCTCCAAGGGGG 22562 30 100.0 37 .............................. ACGGAGACCCGGATCTCCGAGAGATGTCCGTAAAGGG 22629 30 100.0 35 .............................. TCCTTCACCAAGGCAACGCGCGTGCCATGCAACAC 22694 30 100.0 36 .............................. AGCAAATCGTTCGCTTGGAGCTTCTCCCATAGCTCC 22760 30 100.0 39 .............................. GTGTTTGCCAAAACCAGAATGGCTATCCCCTCCGGAGCG 22829 30 96.7 38 A............................. CGCAGCGTCTGGACATCATCGAGGCGGTGGTGTCCAGG 22897 30 96.7 38 A............................. ATCGCCTCGCTCGCCTCCGAGTCCGGGGCGAACGAAAG 22965 30 96.7 38 A............................. TCCCAGGGGGAATCGAGCCAGGAGGATCTCGTCGCCGG 23033 30 96.7 37 A............................. GGGTGATGGAGGGCCAGGAAGGCCCACCGGACCCCGG 23100 30 100.0 37 .............................. CAGGGAGCGTAGATGTGCATCCCATAGGCGATCTCCG 23167 30 100.0 37 .............................. AATCTCCAGGCGGGCTTGCCGCCGGGCCCGCTTCTTG 23234 30 100.0 38 .............................. CGGATAGAGTCCTCTCCACCCCCCGAGCAACCGATCGG 23302 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ======================================== ================== 71 30 99.4 37 GAAGCAGGAACGCCGTGGTGGCATTGAAAC # Left flank : GCTGTTGCGACGCTATATCCGGCCGAAGGGCCGGCGCCAGCCCGGGGATCCGTTCCCGCGGAGCCGACGGGTGGTGGTGGACGAGCGGGATCGCCCCATTCGGCCCTTCGGCTGGGTGGAGGTCCGCCTGGAGCGGGAGTCCTGACCGATGCTGATCGGCCTGATCCTTTCGTTCACTCCGCTCAAAAATCGTCCGCGGACCCCCATGGGAAATCCGGCGATCGGGGGTCTGCGGAAGGGTCGTCCAATGACGCGTAGCATGGCGATGGAACCCTCGATCTTCGATCCATCCGATACAAAGAAGATCGCCTTTTAGGGATGTAGAACGTGCCAATCAGCGGGGGATCGGACAAGACTTCCGCGGACCCCCGATGGTGGGATAGACTGGAAAGGGTGAAGTGGCCGTCGAAACCGACCGATGTTCGCACCCAACGATCCCCGTCCCTTTCAACGTCCCCGCCCAGACTTGACAAAAGTCCCCTATCCCGTGGTATAATAGG # Right flank : CTGCCCTCGCCCGCTTCCTCAGCCGTCGAAGCCTGGACATTGCGGCACCACCGCAACGAGGGATCCCAAGGATCGGATAAAGGGAACCGCCAGAAAACTCAGGAGGAGTCCAATGGGCATCGTCCACTTCGCAGGGCTGGGATTATCACCGGGCGCTGTTACAGCCGGATTATCATACCTGAAGCACGAATACGCTCGAAAATACAAGGACATATACGGGGAGATTATCGAAGAGGTCGTGTTGTTCACCTCTACCGAAGTTGCCAACGGAGAAGTGAAAATGAAGCGCGGTGATGCTGAGCATAACGATTACATGAGTGTGAACGTCCGCTCAACCCGGGCGAGAGAAAAACCGAACATCGTGGAGGTTGTGACGGAGTTCATTAAGCGAGAGATCGGGGATGTAGAGATCTACTGATGAACGATACCAACATATCATCGAAGAGCTGAAAGCCGTCTATGATGAGGATTCATCCCGGTGGCTGACGAGCCGAGATCTG # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:0, 3:3, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GAAGCAGGAACGCCGTGGTGGCATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: F [9,4] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-4.00,-6.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [46.7-31.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : NA // Array 1 117569-123214 **** Predicted by CRISPRDetect 2.4 *** >NZ_FYEK01000044.1 Thermoflexus hugenholtzii JAD2, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ======================================== ================== 117569 30 100.0 36 .............................. AAAGGCCAGTTCTCCCTTGTCGCGATAAAAGGCGGG 117635 30 100.0 36 .............................. CGTGATCCATCAAGGTCCACTTCTGGGCGGAAAAGC 117701 30 100.0 36 .............................. TTTGCTGCGCGCTGTTGCCGCGTAGTCGTGCGACCC 117767 30 100.0 37 .............................. ACCGCTGTGGGGGTCCGGGGGGCGAAGCCCCCCGGGG 117834 30 100.0 37 .............................. GACGGCAATGGCCGCAAATAGAGAACCACCTTGGGGA 117901 30 100.0 37 .............................. CAGAGCAGCAAGCATCCATCTCGACCAACTTCCACCC 117968 30 100.0 37 .............................. CATGGCCGTCTGAAATGCGGCGCGCTGCGCGATGTTG 118035 30 100.0 37 .............................. TTGCCTCCTCCTTGCGAGGTCTGGAACAAACAAAGCC 118102 30 100.0 38 .............................. TACAGCTCTGGGTGAGCGTCCAGAACCACCACATGCCG 118170 30 100.0 37 .............................. CGAAGAGCGTTTTGCCCTCCACGCCCATCTTGCGGAG 118237 30 100.0 36 .............................. AATGGAGGGCCGCCTGCATCAAGCATCTGCGTTCGT 118303 30 100.0 38 .............................. AGTGAATCTTCAAAACCGGGATCTCTACCGTGTAAATC 118371 30 100.0 37 .............................. GTTATCCAACACGTGCATAAATTCATGCACATTCCAC 118438 30 100.0 38 .............................. TGGAGGCCCAGATCCGGAAGGCCTTCATCAAAACCCGT 118506 30 100.0 38 .............................. ATTTGCCTTGTCTTCATTGGCCTTTTGTGGGCAAGCCC 118574 30 100.0 36 .............................. AGGGGCCCTCCAGGATCCTCTCGGCTGAGGGATCGG 118640 30 100.0 36 .............................. ACCTTGGCGACTACTGCAACCTTGCGGATGTGATCC 118706 30 100.0 37 .............................. TCTCTCCCCCCTCCTCTTTGGATTTAGCCCGGCCTTC 118773 30 100.0 37 .............................. CATCCCGGGCCCGGGCCCAGCCCGGCTCCGGCAGCGT 118840 30 100.0 37 .............................. TGCCTTCCCCCTCATACCCCCAGTTCAGCCGGACCAA 118907 30 100.0 38 .............................. AGGTCTTGTGCTCCGCAGTCCACCCGGGGTTGATCCTG 118975 30 100.0 36 .............................. CCTGGCCAAAAAGGCCAGGGGCCCAAAGCCAAGGGG 119041 30 100.0 37 .............................. TCTTTTTGTTTTTAATTTGTCCCTCCGCCGGCGCGAA 119108 30 100.0 37 .............................. ATCCACCCGCATCGAAGCCATCGCCGTGCAACTCAAA 119175 30 100.0 37 .............................. AACGGCGTCGTGATAGAGGATACTTACATCACGCTGA 119242 30 100.0 36 .............................. CCCGTGAGATCATAGTATTCATCGGAGAACCAAGAG 119308 30 100.0 37 .............................. CAAAAGCGCCGCCCTCGCGGCGGGCGGCAGCGGAAAC 119375 30 100.0 38 .............................. GGATTTCCCCTGGCCGGGCCACCGGCTGGCCCGGAACG 119443 30 100.0 37 .............................. GGCACAGTCACGAGGAACCCGGACAAAAAAGATATTG 119510 30 100.0 37 .............................. ATCCCTCGCGGCGGGGGCCGCGTTGGATCGGGATCGG 119577 30 100.0 36 .............................. CCGGAACGGCCGGCTTCGCCATGGCGCCCCCTCTCC 119643 30 100.0 37 .............................. GCCATGGGCCAGGAGGGCGATATAGCGCTCTAGACAC 119710 30 100.0 37 .............................. GCAATATCGGCTGCCCGGTCACGAAGGCCTTGACATA 119777 30 100.0 38 .............................. TTTCGCACAGCAACTTCCCCGGATCTCTCTGCCGGACT 119845 30 100.0 36 .............................. CCACATGCGGCGCGGAGGGGCATTGCCCGATACCCT 119911 30 100.0 38 .............................. AGTCTTGGGCTCGGTGCCCCGATTGTGGTGAAAATTAT 119979 30 100.0 37 .............................. CCAGGAGGCCGGGAATGTCTTCCCGGCTCACCGGGTG 120046 30 100.0 36 .............................. TTCTGTTATTCGGTTGGACTGACAAATCCAGCGATT 120112 30 100.0 38 .............................. GGCTTTGTGGTCGTTGATGTAAACCTCGTTTACGGCTT 120180 30 100.0 37 .............................. GATTTCGGCTGGCTGCATCCCAAGACCTCGGGGAAGG 120247 30 100.0 35 .............................. TATGGGGTTCACTCCCTGATTTTCCCTCCCCCTCA 120312 30 100.0 36 .............................. CAGCTACCGCCTCGACAGGGCTCCAGCCCCACCAAT 120378 30 100.0 36 .............................. GAAATATTTGCCACCTTTGAGCAGAAACTCATCAAT 120444 30 100.0 38 .............................. AAATAGCAACAAACAAAATCACTATTTGTTCGGTCCAA 120512 30 100.0 37 .............................. TGGCTTGGGTAAACGAGAACATATGGAAGCGGATCAG 120579 30 100.0 38 .............................. GGCGGGTCATTTCCCCGGGCGGGAATCGAACCCGCCAG 120647 30 100.0 37 .............................. TCACGAAGTCGTCCTCCACCCCTTCGGGCGGGAAGGC 120714 30 100.0 36 .............................. CTGGGTCCGGGCGTATTGGCGCGCTCACTGGGAGCT 120780 30 100.0 35 .............................. ACCCTTGGCCCGGATGCGGGCCTCGGTCCGGACCG 120845 30 100.0 36 .............................. GGCCGATCCGCCGCCTGCGGCTGCGGCGATTGTCTT 120911 30 100.0 36 .............................. ATCACGCGCGTGGACATCCGGCGGATGTATCGACTC 120977 30 100.0 36 .............................. CTCGGATGTTGACGAGGATCTGAGAGATCGGGAGGT 121043 30 100.0 36 .............................. GGCGGACGTTTTCAACCGTGTCGGCGGCTACTTCGA 121109 30 100.0 37 .............................. CCAGATCTTCCATCGGGCTATCCCTCCGGCAGGATGG 121176 30 100.0 36 .............................. ATCATTTCGGCGGCGGAGCTCGAGGGCAAGGAGTTC 121242 30 100.0 38 .............................. GCATCCACGAGGAATGTTCGAGCAGATGGGACTGGCGT 121310 30 100.0 36 .............................. TGGCTTGGGTAAACGAGAACATATGGAAGCGGATCA 121376 30 100.0 37 .............................. TACACGCTGTTCATAATCCGCTTCCAGAACTGAGCGC 121443 30 100.0 37 .............................. TATTGGACACAGGGATCGCGAAAGGGCACGAGGATCT 121510 30 100.0 39 .............................. GGCCAAAGCGTTGGGGGGGGCCATCAAAATTCATCTTGA 121579 30 100.0 37 .............................. TTCTCTGCGCCGCCAGGCGTGCGTTACCGGGCGCGAT 121646 30 100.0 37 .............................. CCTTAACGATCCTCCCGTGTTTGCTGACCAGCCCCAG 121713 30 100.0 37 .............................. CTATGTCAAGGCAATGGACCTGTTGAAGGAGGAGGTG 121780 30 100.0 37 .............................. CCATGGCGGCCTTCAACAAGTTTTCGGTCGTAGAATT 121847 30 100.0 36 .............................. AACTTCATCTTGAGAAGAAGATTGCTGAGGGCTACT 121913 30 100.0 37 .............................. TCCGCCATGGCGACCTTCAACAGGTTTTCCGCCGTGG 121980 30 100.0 37 .............................. CGCGCCCCGCCCCGGGCGGCGCGGATCAGGTATTCGG 122047 30 100.0 37 .............................. GAATCACCAGAGGAGTGGTCGTCATGGCTTATCCCTG 122114 30 100.0 36 .............................. CGTGGGCCGCCCGGGCCAGCAGCATGGTCCGCTGGA 122180 30 100.0 37 .............................. CGGAGGAGGGCCTGGCGCGGCTGCGGGAAGGCGCTGG 122247 30 100.0 35 .............................. TCGCCCGCCGCGGGACGGCCCTGGCGGACTACCTG 122312 30 100.0 36 .............................. TCGATCTCCTCCCGAAGCCGCTGCGGGCGGATACGC 122378 30 100.0 38 .............................. CGCTTCTGGATTAACCCCACCTTAGATCGCGCCCGCGC 122446 30 100.0 37 .............................. GATCCCCGCCGCCTACGACGAGGCCCGCCGGGACGGG 122513 30 100.0 37 .............................. CCGACGCGGCCGCCGAGGCCGCCGCGGCCATGGTGGG 122580 30 100.0 40 .............................. CCCAGAAGCAGGCCGCCTGTGGCCAGGGCCAGCCGGGCCT 122650 30 100.0 37 .............................. CGTCCCCCCCGTGATCTACCGCCGCTACGAGAAGGAG 122717 30 100.0 37 .............................. CCCAAATGCCTTCCAGCGTGCAGTGATCCCCATCCTC 122784 30 100.0 37 .............................. TTTCAACCAGTCGACGGAATAACCAGATACACGGTGA 122851 30 100.0 36 .............................. CAGCCCATCCCGGACCCCCGCCCAGAACCGGAGCCA 122917 30 100.0 37 .............................. GTCATCTCGGGGGGAACCAGAGTGGCCGCGAGGAGGC 122984 30 100.0 37 .............................. ATGATCACAATGATCTCCCCGTTCTGCCTCAGAGTGG 123051 30 100.0 37 .............................. CAAAGCCCACCACGCTGTCGTGGATCGCGTATAATGT 123118 30 96.7 37 ....................A......... CAGGGGGTTGCCAGGTAGAGGGCGCCGCTCGGAAACA 123185 30 96.7 0 .................A............ | ========== ====== ====== ====== ============================== ======================================== ================== 85 30 99.9 37 GCCTCAATCGAACCAGCGTGGGATTGAAAC # Left flank : AGTATTTCACGTGGGTGGAGCAACAGGGCAAGACGGTGGAGGAGCTGGACGCGCAGCTGGATCCGGAGTGGTGGGAGCGGGAGCAGGCGCGGATCCCGGAGCTGGACCGACTGTGGCGGGAGGTGCGGGGCTTTTAGCCCGCCGGCCCGAGGCGCCGGATCTCGACCTTGCGTTCACCGGGCGCAGAAACCTTCCGCGGACCCCCATGGAAAATCCGGCCACCGGGGGTCCGCGGAAGGTTTGTTTAATGAGCCTTTAGAATCCACCATTCTTCTCCCATTCAGGAAGATGATGGTTTGATTTATGCCCGAAACGAGATATTTAGATGAGCAAGATGCCTTTCTTCGGAAAAGGCTTCCGCGGACCCCCCTTCGTCCTCTGGCGCATGGAGGAACCCGAACCCCTTGACAACCAACGCGTCCTGTGTTATATTCATGGCGAACTGGATGCAGGAAAGGGTAGCTCTCTCTCTTCTCCCTCTCACCGCCTGAAATCGCAGG # Right flank : CCGGCCCATTCGACATCCTAACGAAAGGAGGAGGACATGTTGCGAGCCATCTGGGAATACCTCACCTACGAGCGCTATGGCCGCCGGATCATGCGCCCGGCCGCCGTGGGGATGCTAGGGACCACCCTGGCGGTGGGCGCCATCGCCCCGATCATCCTGGCCGCCTGCCTCATGGCGCCCCCGCCGGTCCGCCCCGCCCCGACTCTCCCCCCGCCCACGGCCACGGCGGTCTTCGCCACGGCCACGGCGGTCGCTTCCCAGCCCACCGCCACCCCCGCCCCCCTCTGCCCTGAGGACCCGCAGCTGTGGCAGCTGGTGGAGATCCAGCCCTTCCAGGACCCGAAGACCAGCAAGCCCGTCCGGCTGCTCAAGCCCATCTACCGCATCGAGCCCCCCCTGCGTCTACCAGGGCCTGTGGCGCGACCTGGCAGACGCCCTGTTTGCCACCTACACCCGGGCCGACGTGCCGCCCAAGATTGACAAGAAGGTCGAGGTCCCCT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:0, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GCCTCAATCGAACCAGCGTGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: F [9,5] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-1.40,-1.20] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [45.0-45.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0 Confidence: HIGH] # Array family : NA // Array 1 92534-97067 **** Predicted by CRISPRDetect 2.4 *** >NZ_FYEK01000003.1 Thermoflexus hugenholtzii JAD2, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ========================================= ================== 92534 30 100.0 37 .............................. GGCGGCGGGCGGCCTCCTCGAGGGTCATGACGAACCA 92601 30 100.0 37 .............................. TGCCGCCAGGGCTTTCGTCGCCATGATAGCCATAGCC 92668 30 100.0 38 .............................. TTGTGGATGAGGCGGAGTACATCTCAGACGAGGTCATC 92736 30 100.0 39 .............................. CGTAGAGCAGCCAGGCCCAGAGTTGTTGGAAGCCGGGAG 92805 30 100.0 37 .............................. ATCGCTACCCCGCGTGGCCATATGGCCGTCCCGATCC 92872 30 100.0 38 .............................. TAGATTTTCCAGAGTGACGGAGGAGGATTCGCCGTGCG 92940 30 100.0 37 .............................. GATGGACGCATTGCGGCCTTCGAAGCACCGGTGTGGC 93007 30 100.0 37 .............................. GGCTAAGCGCATTTGAAATCCCGGGTTGAGATCCAAA 93074 30 100.0 37 .............................. CATACGGTTTATTACTCTTATACTGCAACGTAAACAC 93141 30 100.0 37 .............................. TAAAAGTGATTTCATCCATCTTTTCGCCTCCCTTTTT 93208 30 100.0 37 .............................. AAGAATCGCTGGAGTGTCAGCCACAATGGCGGTCTTC 93275 30 100.0 38 .............................. CGAAGGGGAGCGCCGCCGCCGGCGCTCCCGGAAGGCGG 93343 30 100.0 38 .............................. CCTTCAGGATGGCCTGGCCGTTCGCGCCATCGACGAAA 93411 30 100.0 38 .............................. AACATGAAGCGATCGAAACTGGTAAATGCGGACCCCAG 93479 30 100.0 37 .............................. CACTGTAGGACCACGGCCCATCTGGCTTGAACTCCAC 93546 30 100.0 37 .............................. CTCATACACATCCAAGACGCCATCAACTTCGTGATCT 93613 30 100.0 37 .............................. TCTGCTCCAAGAGAGGAGGGCAATTCGAAAGCCATCG 93680 30 100.0 38 .............................. TACGGCCTCGAGAGCATCTCCTAAGGCCGCAAAAGCGG 93748 30 100.0 37 .............................. AGATTTAGCCCGGCCTCCCCGGCCGGGCTTACTCCCC 93815 30 100.0 36 .............................. CGCACCTTTTCTCGGAGGCCCTCGAGGCCGTCCAAC 93881 30 100.0 38 .............................. CGACATCGGCGCAGATGCGAGAAGGACCCAAGGCGCGG 93949 30 100.0 37 .............................. ATTGATTGATGATCAGGCAAATGCCGCACCCAAGGTC 94016 30 100.0 38 .............................. CCCCCCAAGGGACCTGGCGATGATGGGGGCCAGGGCGC 94084 30 100.0 36 .............................. CGCGCCATAGGCGGCCGCCTGCTGGGCGGCCGCGGC 94150 30 100.0 37 .............................. TCGGGACGTGCAAGCACATCGAGATGGTGCGCCTGCA 94217 30 100.0 37 .............................. CCGCCTCGGGGTCCTCAGTGGACTGAGGCGCGGCCGG 94284 30 100.0 40 .............................. CCACCCCGAATGACCCGCTCTCCCCAGAGCGGGTCGCAGT 94354 30 100.0 38 .............................. TCGAACAGCGGAAAGGAGGTCGGCAAGTCATATACTTG 94422 30 100.0 37 .............................. AGAAAGGGGATCGAGGACTGGTCCAGCCACCACCAAT 94489 30 100.0 38 .............................. AGCCCCACCAGGCGGGGAAACAAGCGGAGCCCTGGGGA 94557 30 100.0 37 .............................. GCCGTCCCGGCCGCTCTGGAGCCGATCTCCGAGCCAA 94624 30 100.0 38 .............................. GGGAGAGCCTGCGGACCAGCTCCCGCAGGAGGTCGAGA 94692 30 100.0 37 .............................. TCGATACGCGGAGACCACCGGAAGCGCGTCCTCTCGG 94759 30 100.0 37 .............................. CACGCCGCCCTCTTTAGTCCCCGAGTCGCCATCCTCG 94826 30 100.0 37 .............................. GCGATCAGCTTGGGGCGGCCAGATCGGGTTGTTCCAA 94893 30 100.0 37 .............................. TCCCCAGATAGACGCGCGTGCCGCTCGTCCCGGGCTC 94960 30 100.0 37 .............................. CGAACACGCCGCCGCCACCGCCGCCGCCGGCGGCGAT 95027 30 100.0 38 .............................. CCCCAGGCGAACACCAGCGGGCCTCGGGCGAGGATCTC 95095 30 100.0 37 .............................. ACGCCTCCTCCGGGCTCGGATCCAGAGGAGACAGGGT 95162 30 100.0 35 .............................. ACGTTTGGGCCGCTCGCGCCCTCCAGCCCGCGGCG 95227 30 100.0 36 .............................. CCTTCGCCGGGTGGCTGCTGGAGCGGCCGTCGGCGG 95293 30 100.0 37 .............................. AAAAATTCGGCGGGCCTTTTCTGTTTCCATACCGGCG 95360 30 100.0 36 .............................. GGGCCAGGGCGGTCTCCACCGCCCGGGTCGCCCGCA 95426 30 100.0 37 .............................. TCCATTACTTCTGCTCGCCTTCTTCGCCCGGGAGCTT 95493 30 100.0 36 .............................. CTGACTTCGCGTCACCGTGTGTTCCGGCCCGCGTCC 95559 30 100.0 38 .............................. TGGAAGACCCTTGAGCGATGGCTCCTCCGTTTGTCCGC 95627 30 100.0 37 .............................. TTCTTTGATTTGCCGTGGGATTATGCCCCCTCGAAAT 95694 30 100.0 37 .............................. GCGCATCGAATTGTCACCGTGCCGCCCACGCCAGGGG 95761 30 100.0 38 .............................. TGAAGCGGTATGAATGGTCCCAGTTGGTCGAGCTGGGC 95829 30 100.0 37 .............................. CAAAACGACGATGACTGCCTCGCTTGTGTTGGGTTCG 95896 30 100.0 37 .............................. CGGCGCCACCAGCGGCGCATTGCCCTGCCCCACCAGG 95963 30 100.0 37 .............................. ATGTTTACCTCCCAGGCTGGATTTCACAAATAAAAAG 96030 30 100.0 37 .............................. ATTCCTCGCACGCCTTGTGGGCTTCGAGGAGTTCATT 96097 30 100.0 36 .............................. CAAATCGCCCTTTGAGCAAAAAGCGGGCGGGTCGAG 96163 30 100.0 38 .............................. ACTGGTCTTCGCCAATGGGGCGAGATGGGGAATTTTCG 96231 30 100.0 41 .............................. GCCTTCGACGAAGACCTCGACCTCCTGCGGGAGCTGGTCTG 96302 30 100.0 37 .............................. CGGCCTGCGCCAGCCGCGACAGGCGCAGGCGGTATTC 96369 30 100.0 38 .............................. TCGCAGCGATGGAATAAGGAAGTCCCCAAATGCGGCTT 96437 30 100.0 37 .............................. GAATATCGATATCCCCAGCGAGAGGGATGCTAACGTG 96504 30 100.0 35 .............................. CCTTGCGGGGATCGATGTTGTTGGCCCACAGGCAG 96569 30 100.0 37 .............................. ATTCAATCCCTCCTCCTCCAGCACCCGATCCCAATCG 96636 30 100.0 38 .............................. CTCGTTCGAGCCATTCGCCGGCCAACGAAATCCGGCCA 96704 30 100.0 35 .............................. CGTAGATCTCGATATAGCCCCAGGACCCCAGGCGA 96769 30 100.0 39 .............................. AACAGGTAGGAGATGACCTTGTCCACCGCCAGGCGGATG 96838 30 100.0 36 .............................. GGTCAATGGGTGATCCTCCCCATATCGCTCCGCCAC 96904 30 96.7 36 ................G............. TATGTTGTTCAATCCGATCCCCACACAAACCCATCG 96970 30 96.7 38 A............................. CGAGACCAGCAACACCGGCATGCTCGAGGTCCGCATGG 97038 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ========================================= ================== 68 30 99.9 37 GCCTCAATCGAACCAGCGTGGGATTGAAAC # Left flank : GTCGCGCTGACGCGAGATTTGATCGCGGCCGGACAGCTGCTGGGGATCCGGGTGCTGGACCATTTAATCATTGGGCGGGGCCGGTATACCAGCCTGCGAGAGCGGGGCCTGTCCTTCGCCACCCCATCCTTCTCCCAGCTCGCTCCGAGGACCTGAGAGCTGACCTTGCGTTCACTGAGCGCAGAAACCTTCCGCGGACCTCCATGGGAAATCCGGCCACCGGGGGTCCGCGGAAGGCTTATAAAATGAACTCTTGGAATTGACCTTTTCTCCCTATATCCGGAATAGGATACATTTATTTGTGGCCGAAGCGATCCTTTCAGAGGAACAAGAAGGCCTTTTCTGGAAAAGGCTTCCGCGGACCCCCCTTCGTCCTCTGGCGCATGGAGGAACCCGAACCCCTTGACAACCAACGCGTCCTGTGTTATATTCATGGCGAACCGGATGCAGGAAAGGGTAGCTCTCTCTCTCTTCTCTCTCTCACCACCTGAAATCGCAGG # Right flank : CCATCAGAGGGGAGCAATCTGGGAGCCTCAAAGATAGAATGAGGTCGGCGGTCAAGGAGGCGCAGAGGACGGAAATCGCCATCATAAAGCACGATCAACTCCAAAGAAGATGACTACCGGAGGCATTCAATGAAATGAAGGGAAAAAGCTGCTGGATGAGCCTGGTTCTGGTGGCCGCCCTGGCCGCGGCTTGCGCCCGGCCTACCCCCGAGCCGGCTTTCTGGATGGAGCCGTGCCCAAACCTTCCCCCCGAAACACCTCAGCCGACCCAGGTATCGGAAATCCTGGAGAAGCTCCCATTCATCCCAGCGGACACCCCGGTGGAGATCGGGGATTGGATCGTCCGGGTGGGCAATCTCCGATGGACCTATGAGTATTTCGATTCCTACACCGGCAAGCCTGTCCGCAGCGAATGCCCATGGCTTTCCTTCGAATGGGAATACCGAAGGAAGCACGCCGACGAGGGTTCGGTCAATCCGCTGTTCCTAACGGGGAGCGGA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:0, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GCCTCAATCGAACCAGCGTGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: F [9,5] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-1.40,-1.20] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [45.0-43.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0 Confidence: HIGH] # Array family : NA // Array 2 244865-245735 **** Predicted by CRISPRDetect 2.4 *** >NZ_FYEK01000003.1 Thermoflexus hugenholtzii JAD2, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ============================================== ================== 244865 37 100.0 41 ..................................... GCGGGATCCCCGGGGGCGCCGAAGCGATGCCGGCCCGCAAA 244943 37 100.0 42 ..................................... GCTGACTTTGGCCACAGGTCGATTTGTCTCCATTCGGATATT 245022 37 100.0 39 ..................................... TTGGTGGTGGGGCTGATGTCCAGCTCCCGCAGCGAACTT 245098 37 100.0 46 ..................................... GGGGTCCGGTTGCGGATCATGGATTCCTCCCCTCCTTCAGGATCTC 245181 37 100.0 40 ..................................... CCATTTTATGGAGGAGTTCGATCGCGCGCTCTCCGGCAAT 245258 37 100.0 44 ..................................... CTACGCCTGTTCGAATCTGCGCTTTATGAATTGAGCCGAGTGGT 245339 37 100.0 40 ..................................... GGCGCTCCTTCCGAACCGCTTCGGCGGCGAGATAATCTCC 245416 37 100.0 42 ..................................... ACAGTCATTTGATTTGCCCGATTCCTCTTTGAGCAGAGACCT 245495 37 100.0 37 ..................................... GCGGCCCAGCGAATGATATCGGCTGGGATGTTTCCTT 245569 37 97.3 11 ..................................A.. GTCGGGGCGAT Deletion [245617] 245617 36 81.1 43 ....-G.....CTC............A.........A GTGGACCTCTTCTCCCGGGCGTTGAATCTCATTGGGGGTCATC G,C,C [245619,245621,245627] 245699 37 94.6 0 ...............................C..A.. | ========== ====== ====== ====== ===================================== ============================================== ================== 12 37 97.7 39 CTTGCAGTGCCGAGACCCGTTTTCAGGGGATTGCGAC # Left flank : AATGGTGCCTTGCAGCGCCGAGGGCCGCTTTCAGGGGATTGCGGATTGGGTTACTTTGTCCATCATTTTCTCCACCCGGATTTACCCGCTGCCCCGCGCGCCGGCGACGCATCCGGCGCATCGGCCCGTCCTCCCTCTGAGAGGACCCGAACGTTTGGGCGATCTAAACAGTCCGCGAATCCCCTTATCCCCGCAAAACCCGGGGGGATTCGCGGAAATTGATGAAAACCAACCGAAAGGGACACCCATATATCCGGTCCCGAGTCCCCCGATCCGCCAGATATGGGGGTTCCCCAGAGGGGCATCGGGGCGGGTTTCCGCGAATCGCCCGGAAAGCCGATTTCCGGGGGGGATTCGCGGCCTCGACGATGGCTTGGGAAACATCCTTGACAAACCGACGAGAAAGTGGTAAAAATAGAGCCAGAAGCCGGAAGGGGATAAGCGGACCGGAGGATCCGGCTCATAAAGGGGAACCCTCAACGGAAAGAGGCTTCGGGGCC # Right flank : CTCCCTCCTTTCACCCCGATCGGCTGGAACGCATCGCTCGGATGGAAGCGGGGCACTTCTGGTTTGTCGGGCGCCGGGCTATCCTCCAGCACTGGCTGAGACGGATCGCCCTCCCGGCGGAGGGGCTGGTTCTGGATGCAGGCTGTGGAACCGGGTGGACGGTCCGCTGGCTGGCCGATCAGGGTTTCCGCGTGATGGGCGTGGATGTGCTGTCGGATGGCCTAAGAGATTTAAAGGCCCGGGCGCCTTCCCTGGCTCTGGTCCAGGGCGACGCCAGGCGGCTTCCTCTTCGCGCGGGCGGCGTATTCGCAGTCCTGCTGCTGGACGTTCTGGAGCACCTGGAGGATCACGAGGCGCTGCAGGAGGCGCAGCGCGTGCTGAAGCCCGGGGGATGGGTGCTCCTCTCCGTCCCCGCCTTCCCGTGGCTCTGGAGCGCCCGGGATCGGGAGGCCGGGCATCGCCGGCGTTACACCCCAATGATGCTTCGAAGCCGCTTGAAG # Questionable array : NO Score: 2.98 # Score Detail : 1:0, 2:0, 3:0, 4:0.89, 5:0, 6:0.25, 7:-0.16, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTGCAGTGCCGAGACCCGTTTTCAGGGGATTGCGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,9] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-5.40,-3.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-13] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [36.7-36.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0.37 Confidence: MEDIUM] # Array family : NA //