Array 1 1667234-1668284 **** Predicted by CRISPRDetect 2.4 *** >NZ_UGTI01000001.1 Porphyromonas macacae strain NCTC13100, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ===================================== ================== 1667234 33 100.0 36 ................................. ACTTAAGGACACGGGCGTTACAGCTATGTTACGCGC 1667303 33 100.0 35 ................................. AAAAATCTATCTAAAATCGAAATAGCCTCAGAAAC 1667371 33 100.0 34 ................................. CTTCCAAACTCTTCCACGACTTTGTTTGTATCAG 1667438 33 100.0 37 ................................. GATTACTTTGCCCCAGGGGCATACATGGGAGAGTTAT 1667508 33 100.0 34 ................................. TTACCCATCCTCTGTGCCGGGCACTACGAAAACA 1667575 33 100.0 36 ................................. CCTGATGGCGGGGGGTTGTTGCTGCCAGCGATGAAC 1667644 33 100.0 35 ................................. AGGTCAATGATGCCGGCACGCAATTTCGCTGGCTG 1667712 33 100.0 34 ................................. ATCTTACGTTTGTGCTCGATGACCGTGATGTGCT 1667779 33 100.0 34 ................................. ACTTATTCCATCCGTACTTAGATACCCGGCTATG 1667846 33 100.0 36 ................................. ATGTGAAATCTTTGTGCCAGAAGAGGCTTCTGGTGT 1667915 33 100.0 33 ................................. GATGGTGTCGACTTCGGCGCTGGCCAGTATCGC 1667981 33 100.0 35 ................................. AAAATCGCAAAACAAATCGATATCGTCTATATTAA 1668049 33 100.0 36 ................................. GCCATTATTCCGTGTCTTTATATAAGTCGAGGATAC 1668118 33 100.0 34 ................................. TTGAGTTACACCTCCGCAAACCAGTTTGTCCATT 1668185 33 93.9 34 ............................C..T. ACTTCACTGCCTACGATGGAAACGCCATAACGTT 1668252 33 93.9 0 ............................C..T. | ========== ====== ====== ====== ================================= ===================================== ================== 16 33 99.2 35 GTCGCAACCCGTCCGGGTTGCGTGAATTGAAAT # Left flank : TTGATGAGTATCCGGTTTTCTTAATCCAATAAATCATGTATTTACTTATTACTTATGATGTCTGCACCTCAAGTCCTTCAGGAGCTAAACGCCTTCGTCAAGTTGCACGTATCTGTCAAAACTATGGACAACGAGTTCAAAATTCTGTTTTTGAGTGCTTAGTCGATCCCACTCAATTTATCTTAATGAGGCAAGCTCTTCTTAATACTATAGATGAAGAGCTTGATAGTTTACGGATTTATCAACTTGGCAAAAATTATCGTAATCAAATCCTTTTTTACGGTCGAGTTACTTCTTTCGAGTTAGAAGGAGAATTAATTATATAATCGCTCTGCGAACCTCAAGTACACAGTAAAAGCACACCCCTTTCGCATCTCTTCATTACCAGTAGATTAGATCGAATTTGTCAAAATTATAGAAGTGCGTTCTTTGAAATATTTAGATATTCGCATTTTACCTCTCTATATGTCCTATAAATAATATATATTTACATACTTACA # Right flank : TTGCAATTAGATTTTGTAACGAATGTACTTATTTAAAGCAAATTCAAGAAAAGAAAAAGAGATAAGAAGCTATAATTCAACGGAGGAGAATTCGGCAAAAGCCTTTTGAAAGTCTCTTTCGGCTTCCAGAGTTCGGTTAACCGTGTCGTAATACAACCCTATCTCCAGGATATAATCCAAAAGGGAAATGTGCCCGGCATCAAGCGCTTTCTTTAGCAGTTGTGTGCTGTTTACATCCACAAGCGTTCTACGATAGCTCTCGGCTGTATCCTTCAACCCTCGGGCACGTTCATATAAAATTTTAAGCCGGCTGTAATATTGCTGTTTGGTGTCAATTGTCTTCAATTCAGCTGTCCGGACAACTGCTTTTGCCTGTTTGACACGGTTTTTATTCGCCCAAAGAGGAAGCGATATACCCAAAGAAATACCATGGGAACGCTCTCCAGCCTCTTTTTCACTCATATAACCGGCCGAAAACGCAGGTAACCCATTTGCTTTAC # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:0, 3:3, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCAACCCGTCCGGGTTGCGTGAATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: R [7,8] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-5.90,-5.70] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [76.7-75.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.5,0.37 Confidence: HIGH] # Array family : NA // Array 2 2241126-2240118 **** Predicted by CRISPRDetect 2.4 *** >NZ_UGTI01000001.1 Porphyromonas macacae strain NCTC13100, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 2241125 36 100.0 30 .................................... CCCGAACTGATTTTTACTGCTGGGCGACTA 2241059 36 100.0 28 .................................... TATAACTTGTTTTCTTATCATTCAAGGA 2240995 36 100.0 30 .................................... AGCAAGAATCAACTGATTGAGGTTTCACGT 2240929 36 100.0 29 .................................... ATTGTTCGGAAACAGACAGGCAGCTTATT 2240864 36 100.0 29 .................................... TGATGCAGAATGATCAGACAAGACCTCCC 2240799 36 100.0 30 .................................... AAAGGGACGAATTGTATTTTAACATGAGCC 2240733 36 100.0 29 .................................... AAACAAAGCGGTGCTGTTGTCTTGTTTTG 2240668 36 100.0 29 .................................... CTGCGAATGACTGGGAAGAGCGTGTACGC 2240603 36 100.0 29 .................................... GTTCGGTGTATGCCGGATGTGGATGGTGA 2240538 36 100.0 29 .................................... AAAAACGGCTTGTTTAGCTAAATGAAAAT 2240473 36 100.0 28 .................................... AAATATTTTCTTGCGGTAAGTGATAGCA 2240409 36 100.0 28 .................................... TATGATGGAAGCAGCTTTGATTATTAAG 2240345 36 100.0 28 .................................... TATGATGGAAGCAGCTTTGATTATTAAG 2240281 36 100.0 28 .................................... TGAAGAAGCTTGTATTAATTGATAAGGA 2240217 36 97.2 28 .............C...................... AAAAACGGCTTGTTTAGCTAAATGAAAA 2240153 36 86.1 0 ........................G.....A.T.GG | ========== ====== ====== ====== ==================================== ============================== ================== 16 36 99.0 29 GCCTATAAGGCTTTAGTAATTTCTACTATTGTAGAT # Left flank : TTTAGATTTGTTCAAGGATATTATCGGGTATTTATGAATGATCAACCGGGTGTCAAGTTACCCTCAATAAGTCGTTAATTATGCTTATTATAAGTTATGATATTAAAGACGATAAATTAAGAAATCGTTTTATGAAGGAGCTTGTAAAAAATGGAGCTATCCGGTTGCAGTATTCTGTATATGAGTTTAATAATAATTCGAGGTTGGTTACACATATACTTGCACTTATAGAGATGTCTTTTGCTCCCAAGTTTACAGCAGATGACAGTATCGTCATTTTTGAAACGGAAAGAAATAAACTCATAAAGTATGGTAATGCTATCCATCGAGATAAACCCGTTTGTTATTTCTGATATAAAGTTTTGTTAATCAGTTTTTTATAGTTTTTTGAAGCAAGGAGGGGGGGGATAAAATGAATTTCTAATTCGTAGAATAGACTTTTTAACTTGTTAAAATACAGAGAGTTTCTTATCTTTGTTTTGTCTTATTGCAGATTTGCT # Right flank : AAGATGCAGTAGAAAAGTATAATGATGGTTTTTATTCAAAAGCTATCATTATATTTGTTTAAATCTATCGGTTTGAGTATTGTATATAACCATGGGAAACGATAGAATATATCGCGAAATTTTTCTTTTGAGAAAATAGAAAGATTGTTAGTGTGATTTTCAATAATATTTTAAATCTAAAAAAGTATAGACATGGAACTGCCCTTTTCAGAATCCTACCGCATTAAAATGGTAGAGCCGATCCGAAAAAGTACACGTCAGGAACGTGAGCAATGGATCAAAGAAGCCAAGTATAATCTTTTTATGTTGAAGAGTGATCATGTGTTTATCGATTTGCTTACCGACTCCGGCACGGGAGCCATGAGCGACAAACAGTGGTCTGAGTTGATATTGGGAGATGAAAGCTATGCCGGTGCACGCTCTTATTATAAGATGAAAGCTGCCATCAAAGACATATTGGGGTTTGATTATTTTCTGCCTACCCATCAGGGACGTGCAGC # Questionable array : NO Score: 3.21 # Score Detail : 1:0, 2:0, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GCCTATAAGGCTTTAGTAATTTCTACTATTGTAGAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:69.44%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-2.00,-2.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [76.7-73.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.41 Confidence: MEDIUM] # Array family : NA //