Array 1 172059-170869 **** Predicted by CRISPRDetect 2.4 *** >NZ_RHNZ01000003.1 Levilactobacillus fuyuanensis strain 244-4 contig3, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 172058 29 96.6 32 ............................C AAACGACTCGATTCCGAGCAACTGCTAAAAGA 171997 29 100.0 32 ............................. GGGTACAAATTTACAAAAGTGGTTCAATCCTC 171936 29 100.0 32 ............................. CCAAACATCACATGGTCTGAATATGATGTGCA 171875 29 100.0 32 ............................. CCTGCAAGTAATCAGCGTCCTTGACGGCACTA 171814 29 100.0 32 ............................. ACCGCTGAATCTTGGGCCAACTGTGCATTCCA 171753 29 96.6 32 ............................C GTGATCAATAATGGTTGCCGTCTTATTCGGTC 171692 29 100.0 33 ............................. GCCACATAACGACATGGTCACCGAATATTTTCA 171630 29 100.0 32 ............................. ATATAGCAGAAAGAAAGCATTGATTTTAAATT 171569 29 100.0 32 ............................. GGGGAGCCAAGATGGTCAAGAAAGTTAAGTCC 171508 29 96.6 33 ............................C GGCAAAGCCGCCACCTTATAAGTGGCAAACGTG 171446 29 96.6 32 ............................C GTTACGGAGATTCGCCGCCACTACTACGCGAG 171385 29 96.6 32 ............................C ACGGTGATGAATACCGCTGCTAAGGAATACCG 171324 29 100.0 32 ............................. TAAGCCACTTCCATTTCTTTAGAATCTTGTAC 171263 29 96.6 32 ............................A AAGCCCGACTTAGCTAAATCCAGTCGGTTAAA 171202 29 100.0 32 ............................. CATCTCCATGGCCACCTCCCATCTACAACGAC 171141 29 100.0 32 ............................. TTTCGGTGGATATGAATGAGATTCTGGAAACT 171080 29 96.6 32 ............................C ATCACTAAGCAGTTCAACCTCGATGAAAAGAT 171019 29 96.6 32 ...................A......... TCAACATCGTTAACAACGAATCCGTGACATTG 170958 29 100.0 32 ............................. GACTTGAAAGGCTCGATGGTAGCAATTTGGGC 170897 29 89.7 0 ..................A.......TT. | ========== ====== ====== ====== ============================= ================================= ================== 20 29 98.1 32 GTATTCCCCACGCATGTGGGGTTGATCCT # Left flank : ACGAAGGATGAAATTATCTCAATCGGAGCCGTGAAACAGGAAAGCGGGGCCAAGGTGGAGCAGTTCTATAAGCTGGTTAAAATTAAGCAGTCTGTTCCACCTAAAATTACAGAGCTAACTAAAATAACTTCTGAGATGTTGAATTCGGATGGTGTTGGGTTGGCATCGAGCATGCAGGACCTGAGAGATTTTGTCGGAGACAGTGTGATTATTGGGTATAATTTACGATTTGATGAAGCATTTCTGACCAATGGTGCTAGAAAAGTTGATCAACCAGACTTTGCCAATCGAATGCTGGACTTGATGCCAGTGGTTAAGAAGGCCAATAAGTTTCTGGATAATTACCGACTACAAACGGTCATGGATGAATATGACATCAAAAATGAAGAGCCCCATAATTCGTTGGCAGATGCCCAAGCAACCTTTGAGTTGGCGACCAAGTTAATGGAAAAAGGGATTCTTGAGATTTGAGAATCGCGGTATAACTGCGTTTTCTTAGT # Right flank : CAATAGTATAGTGACTTATTACCTAGTATTTTCTGTGCTAGGGAATGCAAAAGGGCCAACCCATAGATTGGCCCTTTTACTTTCAAAAATTATGCTCTCTAACTGGGGTGTAGTGTGTAAAAAAATGGGCGATAGAAAAGTGAGAGTAAACGCTTCGTCAAGGACGTTGCAACAATGGTAAAACAGCCAAAATCAATGGTGCCAAAATAAATTCGAGCAAAAGTTCAAGCAAGTCTGGAAGAACTCGTGACTCGCGGCCAGCGTAATCACGGATAGGCATCAGCGGCCAACCAGCCGCATAAATCATAGCCTTGGGAACAGATGGATTAGCTCCAGAAGTATGTTTAACAAGACTATTCTTAAGCCTTGCGAGAGGGACGTGAATCAAAGGGAATACTAGGTAACAGACGGTTAGGTACCATGAGGTGAAATTCCAGGTAAAGACAAATCTGCCCACGATAAATTGGCAATTTAATAAGATTAGGATAATGAACGCTGGC # Questionable array : NO Score: 6.08 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.92, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTATTCCCCACGCATGTGGGGTTGATCCT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,4] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTATTCCCCACGTATGTGGGGGTGATCCT with 93% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-11.20,-10.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.74,4.91 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 183365-181747 **** Predicted by CRISPRDetect 2.4 *** >NZ_RHNZ01000003.1 Levilactobacillus fuyuanensis strain 244-4 contig3, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 183364 29 96.6 32 ............................C GAAAAGGGAGCAGCGGCGAAACCTATGGCCGA 183303 29 100.0 32 ............................. ATACTCATTTTGTTTGGCTTCACTGGCATGGC 183242 29 100.0 32 ............................. GATAATGATGCAGCTGATGTTTTTAGCGAGTG 183181 29 100.0 32 ............................. ATAAAAGAGATTCAGGCACGCCTAGGGCACTC 183120 29 96.6 32 ............................C ACACTTGCCAATACACTATTCCTGACACCGTA 183059 29 96.6 32 ............................C TGATAAGTCCGAGCTGTTCGAGCAAAGCAAGA 182998 29 100.0 32 ............................. CTATTGGCCAGATCGTGTTTGAAGGGTGATAC 182937 29 100.0 32 ............................. GCGTCCTTAATCATCTTGATTGGGTGGAATCC 182876 29 96.6 32 ............................C AGCAATGTCACAACAACCATTGGTAGCAGTTT 182815 29 96.6 32 ............................C GAAGACGGCTCAGCGGTTGATTCACCTTTACA 182754 29 100.0 32 ............................. CAGTGGATAGGCTCCCAAACTCAAACTTGGCC 182693 29 100.0 32 ............................. ACCTTAGCCGAATTGAACAGTTCCTGATTAAA 182632 29 96.6 32 ............................C TATTTGGCGATGTGAAAAATGAGGACGTGGAG 182571 29 100.0 32 ............................. AGTGCGTCCGCGCCCATGACAGCTGGCACTCA 182510 29 100.0 32 ............................. AATAATTCCAGCCAAAAATAAAATGAGTGTCG 182449 29 96.6 32 ............................C TGAGTGGGCATCCGTTGCTGATGATCCACAGG 182388 29 96.6 32 ............................C GACAAGTTGGATAAGGTGACACAAGAGCGCGA 182327 29 100.0 32 ............................. ACGCTTACCAGCATTTTGTTGAGCACCAGTCC 182266 29 96.6 32 ............................C GACTCAAAACGGTATTATCATCGGTGCCAATC 182205 29 96.6 32 ............................C ACTATCTACAATAATGTCCGAATTGAGTGTCT 182144 29 100.0 32 ............................. CAGATCATCAAAGACCTGTCCCGGTGTTTTTT 182083 29 100.0 32 ............................. ACCCCAGCAGTCAAGGCCATTGACCCGGCAAA 182022 29 93.1 32 .....................T......C GACTTGGCCGGTGAGTTGCTTAAAGAGGGTGC 181961 29 96.6 32 ............................C ACCGTTGGTTGGTCTACTGATACGCCACCGGA 181900 29 93.1 33 .....................T......C AATAGTCTTAGTTTGCTGATCAAATTTCTTCTG 181838 29 96.6 32 ........................C.... CTCCCTTGTACAAAGTTGGTTAGCTTATATGC T [181833] 181776 29 72.4 0 ..........CAA..G..A..C.....TA | A [181750] ========== ====== ====== ====== ============================= ================================= ================== 27 29 97.0 32 GTATTCCCCATGCATATGGGGGTGATCCT # Left flank : CTCGGGATGATTGACCACCAGTGACGTCTTGTAGCGGCTGTCAGTCATGTACTGACGTACGAGTTCCATCAGAACAACAGACTTGCCGGTTCCGGCGGCGCCTTGAATGATGGCAACCGAGGAAGTATCGCCGGTGAGACCCTGTTTAATGTAGCCGTTAATATTTGTGATTACCGTCTTTTGATCGTCTGAAAGATCATCGACGAAGAATTGTGCTTTTAGAATTTTATTCATTCTGGAACTCCTTATGCATTAATTGGTTTCGCACGAGCACTAATGTCGATGCCCGCGGAAAAAGCTATTGTTATTATAGCAGTTTAAGTGGGAGTCGCTGGATATTCTTGGAAATTATGATTTGAGATTGACTGGCTAGATACCTGTGAGAATGCGGGATTATTTTATTGTGGCGGGGGTAGCGCTGATGTATGCTTAAGAAGCAAGTTGATTGAAAACGAGACTTTGGTGATTTTCAAAGGCCGGTGTGACGGGATTTCTTTAGT # Right flank : AAAAAATAATATTTAATAGAAATATTTAAGCCTTTATATGATGTTAGGGAAGGTGTAATCTAAGACATATAATGAATACGCTTTCATCAAAGGGTTAGACCACAGTATTTTAGAAACTAGTGAAGGTAGAAAACATGTAAATAACATTATTGATTATTTTGTATATTTAATATGTTGACTTGAGATAACTTAACCTGTATCTTTGAAAATATAACATAAAAACAGTAACGCTCAGTGCCAACATAGGCTAGTCAAAACGGATTCGTGACAGATTTTGAATAAAAAGGGCGGGTAATACATATGGTGATGGAACTATCGGAACAGGCATCAGTGCTGTGGGCTAAGAAACGCTCAGAAGAAGACCAACAGTATTGGCTACCATTAATTGTGCACTTGGTGGATACCCAAAACACAATCAATTGGCTGTTCAATCACTGGCTGAGCGCTGGACAGCGACAATTACTCATGGGCTCATTGTCAGAAGAAGCCACGCAACATCT # Questionable array : NO Score: 5.77 # Score Detail : 1:0, 2:3, 3:0, 4:0.85, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.66, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTATTCCCCATGCATATGGGGGTGATCCT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTATTCCCCATGTATGTGGGGGTGATCCT with 93% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-8.50,-9.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [12-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [80.0-58.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.64,5.28 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 223-1715 **** Predicted by CRISPRDetect 2.4 *** >NZ_RHNZ01000006.1 Levilactobacillus fuyuanensis strain 244-4 contig6, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 223 29 100.0 32 ............................. TGACATTCATACAGGATACGAGCTAGCCAATC 284 29 100.0 32 ............................. ACCCCGAAGCGAAGCAGTGGAAGACCATTCCT 345 29 100.0 32 ............................. TGTATAGCTGGTTCAAAACAACGGGACTCCCC 406 29 96.6 32 ............................A CGACGGGGGTTCGACGTTGCAAGCTAACGCAG 467 29 100.0 32 ............................. TTGATAATCTGTTTATCTGGGTTTTGATGGTT 528 29 100.0 32 ............................. ATGCCAATGGCGGAACGAATCGACGACAATAG 589 29 96.6 32 ............................T TGCGAAGGCAAACGGGGGGAATCCTGGCAAAG 650 29 100.0 32 ............................. TGTTATAATCACACTTAACAATTTCTGCACTT 711 29 96.6 32 ............................T GACAAAGTTGCAAGCAGTGATATGATTGATTC 772 29 100.0 32 ............................. AAGCACTGAGAACTTTAGAATCACTCCGCCTA 833 29 96.6 32 ............................T GGCGTCAGCGCCCTCCTTGGTAACCGTTCCGG 894 29 96.6 32 ............................T AGTGTGAATTAACCCACCATCTTCGCCGCGCT 955 29 100.0 32 ............................. AAAGATAGTGTTGCTACTGATTTTGATAGTAC 1016 29 100.0 32 ............................. AACATCTTCCGTCAGACTCAAAGCAACGGGGA 1077 29 100.0 32 ............................. AACGTTGCTTATAACTTGGAATGGTGTAGCCG 1138 29 96.6 32 ............................T ACTAAGTAAATTTTGTCCTAACTTCATTGGTG 1199 29 96.6 32 ............................T ACGGCATAACATTGACGTCGCTAAATCTCATA 1260 29 96.6 32 ............................T GCTGGCGTTCTGCTCGTTGATCTGTAGCTGGT 1321 29 100.0 32 ............................. ATAAAATTGTAATAAAAAATATTCAATAATTC 1382 29 100.0 32 ............................. TTCGCGGCGACTTGTTCCATCTCAGGCACCCG 1443 29 100.0 32 ............................. TCATGTGCGGCGTGCTGGCGGCTCGCATACGT 1504 29 96.6 32 ............................T CATGCTTTCCACCGTTCTAACTACCTCTTTTT 1565 29 100.0 32 ............................. CTCTTCAATATCACTCTTGGCAGTCTGAACTT 1626 29 93.1 32 ....................A.......T TTAGCCGCAAAAGTGTGCCGCAAAAGGTGGCA 1687 29 86.2 0 ............A........A....A.A | ========== ====== ====== ====== ============================= ================================ ================== 25 29 97.9 32 GTATTCCCCACAGGTGTGGGGGTGATCCC # Left flank : AATGCCTGAACTAGCTTAGCAACTAGACCACTTCTAAGAATAGATTCTTAGTGTTGCACTTGATTTGACAATTGAGGAACTTGATTTTTCTGACAAATGTCATTTTTAGATAATTTTTTTCAATTGTTAATCGTGAATGACTGAGGTATGCTAAAGAAGCAAGTTAAAGGAAATAGGCGTTTTTGGAAAAATGAAATGCCGGTGTATCAGTGTTTGTTTAGTG # Right flank : ACCATTACGCCATATGAGAGCGTCTGCGAGTACAACAATACGCAGCAGGCAGTTTCTGAAGTGCTGTGGGTGGTTTGTACCTTACTGATTGTGGTGCTGGTACTTTGGCCGTATTGTTGTCCCTGTACAGAGTAGTGAATGGAGATGATTGCGGAGGGCATGAAAGCAAAATAAAAGGCTACCCTGTTACAGGTAGTCTCTTTGGTAGAGATTAATATAGACCTTCAACGAAAACCGTTGAGACTTTCTTATCGTTGGTGCTGACGTATTCGTTGCCATTTATTGCCGAAATATAAGACTCAGCTACATCATTTAGTGGCAGGAAAAAGGGCTGCTTGCCATTATTAACAGTAATATTGTACGCGCCAGCGTCACCATTGTAACTATCATGGCTCTGGAAAACGTGTCCTAACTTAAAACTCAATTTATATTGGGTGGACTTGCCGACCTTGGCTTTTTTGGTAGTTACACCAGATAATCGCTTGTTTAAGTAGTAAGTG # Questionable array : NO Score: 6.08 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.92, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTATTCCCCACAGGTGTGGGGGTGATCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,7] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTATTCCCCACGTATGTGGGGGTGATCCT with 90% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-11.50,-10.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [65.0-51.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //