Array 1 1-387 **** Predicted by CRISPRDetect 2.4 *** >NZ_JFJN01000139.1 Pseudomonas composti strain AD6 Contig_139, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 1 26 92.9 33 --.......................... CAGGCGATTCTACGGGCCGTGTGCGCATGTGAA 60 28 100.0 33 ............................ CAGCCTGAACACGGTGATACCGGGCAACGTGCG 121 28 100.0 32 ............................ AGGATATCCAGCACGCCGCGGGTACCGGCCTT 181 28 100.0 32 ............................ TGCCCGGTGCCAGTCGAGCTGATAGTCGAAGC 241 28 100.0 32 ............................ AACCCAGACTTGGCGGGAGCCAAACGGGCGCA 301 28 100.0 33 ............................ CGTAGAAATTGGAGACGAGTCCAGCAGTACCAA 362 26 92.9 0 ..........................-- | ========== ====== ====== ====== ============================ ================================= ================== 7 28 98.0 33 CTTCACTGCCGCGTAGGCAGCTCAGAAA # Left flank : | # Right flank : | # Questionable array : NO Score: 6.16 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTCACTGCCGCGTAGGCAGCTCAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [7,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched CTTCACTGCCGCGTAGGCAGCTCAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [1-1] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [0.0-0.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.24,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 2-572 **** Predicted by CRISPRDetect 2.4 *** >NZ_JFJN01000094.1 Pseudomonas composti strain AD6 Contig_94, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 2 28 100.0 33 ............................ CGTAGAAATTGGAGACGAGTCCAGCAGTACCAA 63 28 100.0 32 ............................ AGGCCAAGTACCGGGCGAGTGTGCGCGGCGAC 123 28 100.0 32 ............................ TACGAGGGGGCCGCTACAGTCATCGGGCTGGG 183 28 100.0 32 ............................ TCGCGCGTTCCCGGCTGCTCCACGAGCGGGCT 243 28 100.0 33 ............................ ATCATGCTCTGGCGCTTCGATGCCGGTGACTAC 304 28 100.0 33 ............................ GCACTACCTGGGCGCCCACTCCTTGTGGATACC 365 28 100.0 32 ............................ CAGGAAGCAGGCCACAAAAAAGCCCGCTTTGA 425 28 100.0 33 ............................ ATGCTCCCGGCATTGATCGGCGCGCCGTTGATC 486 28 92.9 32 ............T............C.. GGGCAATAAAAAACCCGCCGGAGCGGGTTTTG 546 27 89.3 0 .....................-.CT... | ========== ====== ====== ====== ============================ ================================= ================== 10 28 98.2 33 CTTCACTGCCGCGTAGGCAGCTCAGAAA # Left flank : AC # Right flank : ATTCACTCCGCCAACGCACGAAACATCACATGGCAATCCACCAGTCCATGCCGGGCGTGGCGGTATGCCTTGGGCAAGGTGCCGACGATGGCGAAGCCGTATTTCTGCCACAACGCCACAGCGACCGTGTTGGTCGCCACCACACTGTTGAACTGCATGGCGCTGAAGCCCAGTTCGCGCGCGATTTCCAGCGAATGGGCGCAGAGCTTGCCGGCGGTGCCCTGGCCGCGTGCAGCGGGGGCCGTCATGTAGCCGCAGTTGCACACATGGTCGCCAGGGCCGGCGGCGTTGGCCTTGATGTAGTAGGTGCCAAGGATCTGCCCGCCCTGCTCGGCGACAAAGGTGGCACGCGGCAGTTCTACCCAGGTTTTCCAGGCCGTTTCACGATCCATGTGCGGATCGAAGGCGTAGGTTTCCTGCGCCTGCACCACGTCTCGGATGATCGGCCAGACCTGATCGAAGTCGGCCACCTCGATAGGTCGAATGATCAACTCGACACT # Questionable array : NO Score: 6.17 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTCACTGCCGCGTAGGCAGCTCAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [7,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched CTTCACTGCCGCGTAGGCAGCTCAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [1.7-40.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0.27 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 1052-2 **** Predicted by CRISPRDetect 2.4 *** >NZ_JFJN01000078.1 Pseudomonas composti strain AD6 Contig_78, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 1051 28 100.0 32 ............................ TGATCCTTCAGTTGCTGCATCTCATCGCGGAT 991 28 100.0 32 ............................ CGACACCCTGGCGCACTACAAGGCACAGGCCG 931 28 100.0 32 ............................ TACCAGTTGCAGGAAGGCGTCGAACGGCTCCA 871 28 100.0 33 ............................ GGCCAGCCCGTGAGTGTTTAGCGCCTCCATCAA 810 28 100.0 32 ............................ AGTGTGAAGTAATGGCCGATATTCATCGCCAG 750 28 100.0 32 ............................ TGCCAGGAACGGCGGTGATGCCTTGAAAGGGC 690 28 100.0 32 ............................ ATCTGCCCTGGCCAGCATGGACACGGCGTTGC 630 28 100.0 32 ............................ ACGTTGACGGCTCTGGCTGGCGCAACGCAGTA 570 28 100.0 32 ............................ TTGACCATCTCCTGCAGCTGCTCGGTATTGGT 510 28 100.0 32 ............................ TTCTCAACTTCTGCAAGCGCCGTTTTCTCAGC 450 28 100.0 32 ............................ AACCCAGCCAACCCCGGCGGCATCCAGCCCTG 390 28 100.0 32 ............................ CTTCCAGTCATCCGGCACCACCGGGCCAGGCG 330 28 100.0 32 ............................ TGGCGCCTGCTCGCGTGTGAGTGCAGCGACCG 270 28 100.0 32 ............................ TTTTGCAGCGTTTTGATGCGCAGCTTGCCGAA 210 28 100.0 32 ............................ AGTTGGAGAGGCCGGATTGCTGGTACGCGGAT 150 28 100.0 32 ............................ AAGGAACATGGCGCCGAGGCTCTTGCTGAAGA 90 28 100.0 33 ............................ CAGGCGATTCTACGGGCCGTGTGCGCATGTGAA 29 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================= ================== 18 28 100.0 32 CTTCACTGCCGCGTAGGCAGCTCAGAAA # Left flank : AGCACTGGACAAGCTGCTGGCGCTCAACTGGCTCAACGGCATGCGCGACCACCTGCAACTGGGCGAACTGGCGCCAATCCCTGTGCAGGTGCGCTGGCGCTGCGTCAGCCGCGTACAGGTGGACAGCAACCCGGAACGCACCCGCCGCCGCCTGATCAAGCGCCACAGCATCAGCGAAGAGGAGGCGCGCCAGCGCATCCCCGACAGCGCCGGCAAACGCTGCGACCTGCCCTATGCCACCTTGCGCAGCAACGGTAGCGGCCACAGCTTCCGCCTGTTCATCCGTCACGGCCCACTGCTCGATACGCCTACATCCGGCACCTTCGGCGCCTACGGCCTGAGCACCCAGGCCAGCATCCCCTGGTTCTGACCCTTTTTTCTGAGCGCAAACGGAGCCCTTGCAAAATCAAGCACTTGCAAGCGGCTCCGAAAAAAGGGGTCTCAGCCATAAAACCAGCATGGCTCTTTAACAATCAGTACGTTAGGGTTTCAGAGCTCTA # Right flank : AC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTCACTGCCGCGTAGGCAGCTCAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,7] Score: 0.37/0.37 # Reference repeat match prediction: R [matched CTTCACTGCCGCGTAGGCAGCTCAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [0.0-56.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.51 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 12382-11573 **** Predicted by CRISPRDetect 2.4 *** >NZ_JFJN01000078.1 Pseudomonas composti strain AD6 Contig_78, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 12381 28 100.0 32 ............................ TGGCGTACCCTGCGCTTCGCGATACGTGCGCA 12321 28 100.0 32 ............................ ATAGTCGCCGCCAAACTCGGCGACACAGTTCA 12261 28 100.0 32 ............................ AATCGGTTATGAGCCGACTGCTCTACCGCTGA 12201 28 100.0 32 ............................ CGCCTGCGCGCTGCTGAAAAGGATGCTGAGCG 12141 28 100.0 32 ............................ ATGGAGCGCACGCCATGACCCTAATCGCCCGA 12081 28 100.0 33 ............................ GTGCCGGCCTTGAGGTCGACGTCCTCCCAGGTC 12020 28 100.0 32 ............................ TCGGTGATGTCGTTACGCTTGGGCTTACGCTT 11960 28 100.0 32 ............................ AAGGTCAGGGCCAGCGGGTAACGCGGTTCGGT 11900 28 100.0 32 ............................ TTATGCAGGCGATTACGCTCTGCGGCATCCCC 11840 28 100.0 32 ............................ CTGGCCACCCTTCCTTACTACACCGTCCGCTG 11780 28 100.0 32 ............................ AATGTGAAGTCATGGCAGATATTCATCGCCAG 11720 28 100.0 32 ............................ GTTACGATTTGTTCGAGGTTCGTGCCGCGCTA 11660 28 100.0 32 ............................ AGGCACAAAAAACCCGCACGCGGCGGGCAGTG 11600 28 75.0 0 .C..........GC.......C.C.C.C | ========== ====== ====== ====== ============================ ================================= ================== 14 28 98.2 32 CTTCACTGCCGTATAGGCAGCTCAGAAA # Left flank : ACCAATACACGCACAGGCCGGCCATCAGCAGATGGCTGATCCAGTTCCTCACCCCGTAGCGCAGCATCCACTCACCCAGGTTCTCCATGGGCGAGTTGAACAGCAGGGATGCCATCGTCATCAGGATGCCGATCACCCCGACCAGCAGCGCAACGCCTACCAGGTAATGTGGCAGCGCTGGAGACTCACGCGTAGCGGCCGGTGCTGGCGGCGGGGCAATATCGAAAGGGTTGGCTTGGGTCATGAACGATCCTTGTCGTTAGGTGCACTTATCGAATGTGCGCGAGCATAGTCTCCACGCCTTGCAGGCAAAAGCACCACCCACTGATCGCGTGCGGCAACGCACATGGGCCTCGAAACCGGGCTGATACCCTTTTTCCGGCCCCATACCCAGGCTCTTTAAAAATCAAAGAGTTGGAGATAGCCCTGCAAAAAGGGTCAAACCGCCAGAACGGGGCCTCCAGCGTTGAGAAACAGCGACTTGGACGCTATCGTCTCTA # Right flank : TTGGCACCTCAGAGCAAAAGAGCTTAACTGCCAGCATTGCCTCAGGAGCCCTTCATGGATGACATCAGCCCCTCCGACCTCAAGACCATCCTTCACTCCAAGCGCGCCAATCTCTACTACCTGCAGCACTGCCGGGTACTGGTCAATGGCGGGCGAGTGGAGTACGTCACCGATGCTGGCAAGCAATCGTTGTACTGGAATATCCCCATCGCCAATACCACCACCATCCTGCTCGGCACCGGTACTTCGATCACTCAGGCGGCGATGCGTGAGCTGGCCAAGGCCGGCGTGCTGGTGGGTTTCTGCGGCGGCGGTGGTACGCCGCTGTTTTCGGTCAACGAGATGGATGTGGAGGTGGCCTGGTTCACGCCGCAAAGCGAATACCGCCCCACGGAGTACCTGCAGAAGTGGGTGAGGTTCTGGTTCGACGATGACAAGCGCCTCGAAGCAGCCAAGGCCTTCCAGCTGGCGCGCCTGCAACGTATCCGCCAGGGCTGGCT # Questionable array : NO Score: 6.17 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTCACTGCCGTATAGGCAGCTCAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched CTTCACTGCCGTATAGGCAGCTCAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [7-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [48.3-43.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //