Array 1 76878-75260 **** Predicted by CRISPRDetect 2.4 *** >NZ_JADPCZ010000005.1 Streptococcus anginosus strain 1001270H_150608_C6 NODE_5_length_133180_cov_33.8597, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 76877 36 100.0 30 .................................... TTGTGTCACAAGCTATTGTCCTAATCGTAC 76811 36 100.0 30 .................................... TAAAATTCTATGACTCTCACGTCATGTTGT 76745 36 100.0 30 .................................... TGATGAGATTTCTCTTGTTAATGTAGGAGA 76679 36 100.0 30 .................................... TCGGCAGCAGTTTTTTGCGCATCTAGGACC 76613 36 100.0 30 .................................... TGTGATAGACCACATCGTTCCTATAGCCAA 76547 36 100.0 30 .................................... TAATAAAGATACTGAAAATTCATGGTCTTT 76481 36 100.0 30 .................................... TAATGACAATCGTCTCAACTGGTATACAAT 76415 36 100.0 30 .................................... GCTGGTAATGCTTGGGTTTATGCAACAAAA 76349 36 100.0 30 .................................... AAGCTATCGGAAAAGAGTGGAACAAGCATT 76283 36 100.0 30 .................................... AATCCGAGAAGAGATTAGTAAGATTTCTGT 76217 36 100.0 30 .................................... AGACATTCTTTATTGTCTCGTTCTATTGCT 76151 36 100.0 29 .................................... GTCACATTGGTCGATATTGGCGATTTGAT 76086 36 100.0 30 .................................... TACACTTGTTACGTTCGGGATTTGCAACGT 76020 36 100.0 30 .................................... CGTATGATGAGTTCATGTGGGAAATCAGGA 75954 36 100.0 29 .................................... CTCGCCTATCGCATTCTTGATTGAGTGTT 75889 36 100.0 30 .................................... CTCAACTCAACTCTTCTATTCTGTCGTTGC 75823 36 100.0 30 .................................... TAACAGCTGCAACCATCAAAGAAGATAAGC 75757 36 100.0 30 .................................... ATCTTATTTGCTAGATTCCATTTACTACCT 75691 36 100.0 30 .................................... CACAAGGTAGCTTAAAACGTAGGCATTGGT 75625 36 100.0 30 .................................... ATGAAATGTATTATGAATTTTATTGAGCAT 75559 36 100.0 30 .................................... GACTGCGATTGAGATGCTTGTTCTAGCTGT 75493 36 100.0 30 .................................... AATACTCGGTTTGCGCGTGGGGAATACATA 75427 36 100.0 30 .................................... ACAAGCGATTGAATCGATTCTCTTAATTTA 75361 36 100.0 30 .................................... TGCCGGCCAACTTTACAAATACAGTTAATG 75295 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 25 36 100.0 30 GTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAAC # Left flank : ACAGTTGAATGAAAAGCCCGAAGTGAAATCTATGTTAGAAAAATTAGTTGCAACTATTACAGAACTAATTGCTTTTGAATGTTTAGAAAACGAGCTGGATTTAGAGTATGATGAAATAACAATTTTGGAATTGATTGATGCTTTAGGTGTAAAAATTGAAACACTAAGTGACACTGTTTTTGAGAAAAGTTTAGAGATTGTTCAGGTGTTTAAATATCTTTCTAAAAAGAAACTGCTTGTCTTTGTGAATATGTCATGTTATCTGTCTGAACATGAACTAGCTAAATTGGTAGAATATATTCAACTTCATAATATAAATGTACTGTTTGTTGAACCAAGAAAAGTATACGACTTCCCTCAATATGTAGTGGATGAGGACTATTTCTTATCTTGTGAGAATATGGTATAATATTAACAAATATAAGGAATCGTTCGAGCTGAAGTCTAGCTGGGACGAATGGCGCGATTACGAAATTTCGAGACAAAAATTGGTCCACGAG # Right flank : ACAATACATTTTAATCATAGGGCTTGCAAATTTTTCCAATCGTGTTATAATACTTTTTAGAGACATATCACCTACAGGAAATCTTTCAGAGAGCGTGTGGAGCTGGGAATCACGCAGAGGATGTAGCTGGGACTACTCGATTTATTTTTATGCAAACATAAAACGGTGGCTACGTTAGAGCCAATCAGAGGTGTCAACAAACTTTTTTGTTGTACATGAATGAAGGTGGAACCACGTTGCGACGTCCTTTTAGGATTGCCGCTTTTTATTTTGTCGGAAGGAGGAAGAGTTATGCTCTATATGATTGGTGGATCGCCTTGCAGTGGGAAGTCAACAATTGCCTCCCTTCTTACTCAGCAGTATGGGCTGCTTCATATCAAGTTAGATGATTTGACAGACCAGATGATGGATCAAGCAAGAGCGAACGCAAAGCCGATTTCCCTTCTGAGACAGGACAGAAGTCCGGATCAAATCTGGCTGAGACATCCAGAGGAGATGGC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:58.33%AT] # Reference repeat match prediction: R [matched GTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-0.20,-4.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [73.3-53.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,4.87 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], // Array 1 119551-118875 **** Predicted by CRISPRDetect 2.4 *** >NZ_JADPCZ010000004.1 Streptococcus anginosus strain 1001270H_150608_C6 NODE_4_length_149541_cov_36.2652, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ==================================== ================== 119550 37 100.0 34 ..................................... GAGGGAATGAAAACTCTTCCAATTGAATTTTTCG 119479 37 100.0 35 ..................................... TTACAGCATCGTCGTAACAAGTTACAGGTTTTTTT 119407 37 100.0 34 ..................................... CCAGTTGGTTTTAAGTATTGCGATGCATAAACCA 119336 37 100.0 34 ..................................... CATAGCACATCGCAAATAATCATTGTAACGTAAT 119265 37 100.0 34 ..................................... AGATAGAATAGAATAAGCAATCCGCTCTCCTTCA 119194 37 100.0 34 ..................................... GCAAACGGCTTAGGTTGTGAGTATAACTTTCTCG 119123 37 100.0 33 ..................................... TGTCAAGCTTCTACCATCTGCATTTGTGAGTTG 119053 37 100.0 36 ..................................... GCGTCATTTCCATAACGGTCGCCCATGTCATAGTAA 118980 37 100.0 33 ..................................... CCTGGTGTGTGAATCAAAACTTTGTTTGACTTA 118910 36 89.2 0 ..........C....................A-...T | ========== ====== ====== ====== ===================================== ==================================== ================== 10 37 98.9 34 GTTAGTAACCTATATTACCTCGAGAGGGGACGGAAAC # Left flank : CAAGCTAAACCTGTCGCACCCAGATGCCGATGCTATCATTGACTATCTGGAGCATGAGATGAAGAAGGAGCGTGGGAGTGAAAGCAAGGAAAGAGTCTATAACAAGACTTCTACTTTAAACCTTTTGTCTTTTAGCAATATTTTGGAATTTTATCAGGCGGAAGAGTCTTTACTGGAAAGTATCAAATTAGTGAAGAGTTTTAACGGGGAAAGAAATCGTCTAGCACATGGTCTCGCTGAAATCGATAAAAAGGCAATTAGCTCAAAAAGATTGCGCGCCTTGTTGGGAACATTAAAGGATGTCCTCCAGTCCAACTATGATATTAGAGAAGAACGATTCTCCTATTACGATGTTAAGAATGAGGAGTTACTTGAACTGCTCAAGTAGCTCTCAGTTCTTCCTTTTTGGTTCAAAATATGTTATAATCAAAGAAGTTTCCACTTTTGGGCTGTTAAAACAAGATATGGTGGTTTTCTGGTATTTATGTACAAAATATAGG # Right flank : AGATAAAAATCGCTCTAGTGGGCGCTTTTTGTTATTTTGAAGTTCAAAAGTTCTTGAGGCAAAATGTCTCTTAGAAGTTTGAATTGCAAAAGAAGACAAAGGCTATCTATTTTTTGTAAAAAATCCGAAATTTTAGTATAATAAAAAGACTAGAAGTATGAGGTAATGCTATGGAAATGAAGCAAATTAGTGATACAACGATTAAGATCACAATAAAATTAGAAGATTTAGAAGAACATGGAATGGAGATGTCAGATTTTCTTGTTCCGCAAGAAAAGACAGAAGAGTTTTTCTATGCAATTTTAGATGAGTTGGAAATGCCAGAGAGTTTTTTGGATAGCGGTATGCTCAGTTTTCGTGTAACTCCTAAACCAGACCGACTGGACGTGTTTGTCACCAAGTCTAAGATTGATAAGAATCTGAACTTCGAGGATTTGGCGGATTTGCCAGATGTAGAAGAGCTGTCTCAAATGTCTCCAGATGAATTTTTAAAGACATTA # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTAGTAACCTATATTACCTCGAGAGGGGACGGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:54.05%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-1.00,-4.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.78 Confidence: HIGH] # Array family : NA // Array 2 128867-128251 **** Predicted by CRISPRDetect 2.4 *** >NZ_JADPCZ010000004.1 Streptococcus anginosus strain 1001270H_150608_C6 NODE_4_length_149541_cov_36.2652, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ===================================== ================== 128866 37 100.0 34 ..................................... ATTTTACGCACGTTATTTTGATTGATTTTAATTG 128795 37 100.0 37 ..................................... CCAAGCACCTTTCCAATATAAACCAACTTCACACAAA 128721 37 100.0 35 ..................................... TTTAGCAGCAAGTTGCCAAATTGTTCCTTCTTCTT 128649 37 100.0 36 ..................................... TGAAAAAGAACGGTAGATTAAACCATTCAGTAACAT 128576 37 100.0 34 ..................................... AAGTCATGTTTTCGATTTTACTTTCTTTTTTTCG 128505 37 100.0 36 ..................................... TTTTGTTCTGACATAATTGTCCTCCTTCTTAATTTG 128432 37 100.0 35 ..................................... ATTGCAGACTTCACATGTGTCTAATTCTTCGTCTG 128360 37 100.0 36 ..................................... TCGTTCTGTGTTTGCGCAAGCTGCAAAGGATTTTAA 128287 37 81.1 0 ..............................TTTTTTA | ========== ====== ====== ====== ===================================== ===================================== ================== 9 37 97.9 36 GTTAATAACCCATGTTACCTCGAGAGGGGACGGAAAC # Left flank : ATTCGTTGTTTTGAAACGGAGAATCATGAGGAATTTTTAAGTGGTTATACGACGGGAGAGTAATGATGGGATTTTTTTACAACTTAGATGAGGAGGCGAAAAACTTTGCGCAGAAAAAAACGGTATTTTGTCTTGTTGTCTATGATATCATCAGCAATAAGCGGCGCCTCAAACTTTCTAAATTGTTGGAAGGATATGGTAGGAGAGTCCAACGTTCTTGTTTTGAAATTGATGTTGAAAAAACAAATTATAATCACCTTCTTCAAGATTTAGAAAAATTTTATTGTCAGGAGGAGGGAGACAATATAATTGTTTATGTTGGTGATAAGAAAGAAACAGTCATCTTCAACTCTTATGAAGGAGCAGAAATTCTGGAAGACATTTTGTTTTTCTGAAACTTTTAATTTAATGAAAAATATGGTAAAATATAGATATGTTTCCAAATCTTGAATAAAACAAGATTTAGGGGTCATTCTCTGAAGCTTGATACAAGATATGGG # Right flank : CATGAAATTCGCACAGATACTTGACGACGCTTTCATATTATGCTAATATATTGATTGTAAAGAATAGTTCTGATAAACAGAGAGGGCGCCCTTAACTGGTGAAAAATACTTTCACTTTTTGGGGTGCTTTTTTAGTAAGGAAGGTTAGAAATGTGAAGAAAGTACAATTGTATTTATCAAACGTTGAAATAAGAGACGATGCTCTAGTATCTAAGTTGCAAGGATTTCTAATGAGCCAGATTTCGGAGGATTTTGTGGATTTTCTTCATGAACAAGAGACAAATCCCTACTCTTTAAATCTATTATCCACGAGAGAAGGAACGATATGGACGGTCAATCTACTTACCCAAGAAGCAGAAGAGAAGATATTGCCTCAGCTTCTGGATTTAGAAGAGATTCAGTTAGATACTTACTCAGGAGCCATATCTGTAAAGAGAATAGAGATTCAGACTTTATCACAAGAGACCTTATTGGAAATTTTTCGGGAGGATGATCCTAGT # Questionable array : NO Score: 6.16 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTAATAACCCATGTTACCTCGAGAGGGGACGGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:51.35%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-2.80,-4.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [7-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [68.3-65.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.78 Confidence: HIGH] # Array family : NA //