Array 1 87324-87622 **** Predicted by CRISPRDetect 2.4 *** >NZ_WIAB01000003.1 Paracoccus sp. SMMA_5_4 NODE_3_length_93518_cov_152.248622, whole genome shotgun sequence Array_Orientation: Unconfirmed Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 87324 36 100.0 30 .................................... CAAAGTCCTGCGCACCGTGCTGTGTGACTA 87390 36 100.0 29 .................................... CTGCTCATAGCGACGCTTGGCCTCGGCAC 87455 36 100.0 30 .................................... TGGTCGAAGTCAGCGGTCGGCACAGTTTCG 87521 36 100.0 30 .................................... TGCCTCGCTCAATGAGACTCAGCATGCCCC 87587 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 5 36 100.0 30 GTCCGGGCTTGGCTACGTCGCTTCTTTTGCTAGGAT # Left flank : TTGCACGTGCAGATTGCCGACGACGGTCCGGGCCTCGCGCCCGAAAAGGCGGCACAAGCCCTGACGCGGGGCGCACGCCTGGACGAGACCGGCCCCCCCGGCGCCGGCCTGGGGTTGGCGATCGTCGCGGACCTGGTCGCCCTGCATGGCGGCAGGATATCGCTTGATCGGGCGCGGCTTGGGGGCCTGTCGGTGCGCGTAGAGCTTCCCGCCCCGGCGCTTGTCCAGTCCCGCGCATGACCTTTCGCAAGCCAGCAGGCCGCAACCCCTTCAAGGTCGTCGATTTTCCCTTGCCCCACCCCTCACGACCACTTATCTGACCCCATTACCGTCCCGCGCGGCAAGCAGACGGAAGCGTGGCCGAGTGGTTTAAGGCTCTGGTCTTGAAAACCAGCGTGGGGGAAACTCCACCGTGGGTTCGAATCCCACCGCTTCCGCCACTTGCGCAAAACGCATTTCATTTCTTGCGTTAGGTGACGAGCGATTTCGCGGCAATCTTG # Right flank : TTGACCCCGCGCAACTTCTTGTTGCGCGGGGTTTTTTCGTGACTTGGCCCGAATAAATCTGGCCCCTGCACGCCTAGAACAGTGCGAGTTGAGCAGGTTTTTCCGCGGGAGTCTTGGAGCGTCGCTTGCCATGAAAGACCTGACTGAGCGCATATTGCTTGTCCGTAAAGAAAAGAACCTGGACGTGGCCAGCTTCGGGGACAAGCTCACCCACCTGTCGGGCATAACTTTCGGCCTTCTCCTTGCTCCATGCATGGCGAAGATAGACCGAAAACTGAACCATCTGGAAGCCAAGGTCCAACAGGTCGTTGCGGAACCGCGTGGCCCGCTTGCGTTCGGCGCTGGTCAGCACCGGCAGATCGAAAAGCACCCAGACCCACATGATCCTGTATCCTGAAAGCTGCCTGAAGCCATTGTCACTCATCCTCCTGCTCCTCGGTGGCGAGGGGGATCGGCCGGTCCGGAAAAACAAGGCGCAGTCTGCCCGTCTCGCAGGATCG # Questionable array : NO Score: 3.06 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCCGGGCTTGGCTACGTCGCTTCTTTTGCTAGGAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,13] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-2.80,-1.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [51.7-46.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: NA [0.37,0.37 Confidence: NA] # Array family : NA // Array 1 11718-11321 **** Predicted by CRISPRDetect 2.4 *** >NZ_WIAB01000037.1 Paracoccus sp. SMMA_5_4 NODE_37_length_24597_cov_130.030533, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 11717 29 100.0 32 ............................. GCATATAAGCAGCGCCTGCGCGATGAGGCGGA 11656 29 96.6 32 ..........................T.. GTCCGGCAGGCGTTCGAGGAATCCGACATATC 11595 29 89.7 32 ...........G.......A......G.. CGATCCTGAACTCGCGCATGTCGCGGCGCATC 11534 29 93.1 32 ...........G.......A......... ATGGTTAAATCCCTATGATCTTCTCGGCTATC 11473 29 93.1 32 ...........G..............A.. TGCGGCGGCCAGCGTCGGACAGGCGCGCGACT 11412 29 100.0 32 ............................. CTGTCGGCAGTCGGGCCGTCTGCTCTGGCTGT 11351 29 93.1 0 ..............T...........A.. | CC [11341] ========== ====== ====== ====== ============================= ================================ ================== 7 29 95.1 32 CTGTTCCCCGCACACGCGGGGATGAACCG # Left flank : CGCGACCAAGCTGCATGTCTGGTGGAAGCTGACCGAGTCCGCGGAGGGGGCGGACCTCGCCCGGCTCTGCCAGCTTCGGGGCGAGATCGCGCTGAAGGTGGGTGGCGACACGCATTTCCGCTCGGCCCACCAGCCGATCCGCGTGCCTGGCACGGTCTATCACAAGGGCGGGCTCACCCGGCTCGTCCAGATCCGCGCGGCAGCCGATCTCGAGGTCGACCTCGCCAAGTTGGCCGAGCGCGTCGCCGACATGCCGCCGATGCCCGGCGTCGGCATGGCCACGGCCGAACCCCGTGAGAAACCCGCCATCGACGACGTGCTGGTGACGCCGGTGCATGAGGGCGGCGCGGACGAATGGTCCCGCTTCGAGGGGGCGTCGGCCGCCATCGGCTATTTCCTGCGGCTGGTCCACGAGGGCCGGATCTCGATGGACGAGGGCTGGACGGCGATCTGCGGCTACAACGCCGCGATGCTGCGCCCCGCCTGGCCGCTCGACCGGC # Right flank : GTGGGGGTTATCGATAGTGTCCCACTGCCAAGCGGCAAGCACGCCCAGGCGGCTAGCACGCCCAGGCGGCTAGCGCTCCAGTTCCGAGCAACCTGGAGCCGGATCCAAGCCGACGTTTCACGCGCTTCCTTCAAGGAGAGCGTCGGGAAGTCACCCAAGGTGATCCACAAGCGGCGTTAGTCGCCCCGCTCACGCGGGACTTGAACCTGAAATCGCTTGGCGCCAGAAGGATACAGGCGGACATAAAGGCCGTTCCTATCGCTGAGGCGCTCCTTGTCGACGCCGAACCTAGCGGCCGCGAGTTTATTTACGGTGACGGGTATATGTTTTCCTTTTGGGTGTTACTCAGGTAGGAAAAGGGTATCGAACGGCATCGAGTTTGACTAAGCGCGCATGAGGGGATAAGAGGACTACTGAGGAATAAAATTATTCACAAACAATAACTTGCGATCATTTCGCGACGCCCCCTGAGGCATCGTGCATGGCTCGCTTGAACTTCC # Questionable array : NO Score: 5.57 # Score Detail : 1:0, 2:3, 3:0, 4:0.75, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.56, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGTTCCCCGCACACGCGGGGATGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCACACGCGGGGATGAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [4-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [35.0-23.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.68,5.24 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //