Array 1 19565-20081 **** Predicted by CRISPRDetect 2.4 *** >NZ_JNVB01000018.1 Erwinia oleae strain DAPP-PG531 contig18, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 19565 29 100.0 32 ............................. AATAGAGTAGGTAGATTACGAGGTTATGGGAA 19626 29 100.0 32 ............................. CAGTTGCTGACGCCGCTGATGTTCATGAATGC 19687 29 100.0 32 ............................. TACCTTTAGCGAATATTCCAGCCGCCGCTATT 19748 29 100.0 32 ............................. ACGGTTGGCTATGACGTCGCTGATAGCGGTGA 19809 29 100.0 32 ............................. CAATGAGAGTGCCCGAATATTTTCGGTTAACG 19870 29 100.0 32 ............................. CTGTTGCCTGCCACCATTTTCACGGTGTTCAA 19931 29 100.0 32 ............................. GGCAACCCACTGGGCGACGGTTCTGCGCTGAT 19992 29 93.1 32 ..........T...T.............. CCAAAAAATAAGGGCAGGCCATGCTGCTGACG 20053 29 79.3 0 ...C.......A.AGA..C.......... | ========== ====== ====== ====== ============================= ================================ ================== 9 29 96.9 32 GTGTTCCCCACGTGCGTGGGGTTAAACCG # Left flank : GCCTCTGGTCGCGCCATTGCTTCAGACTGTGCAGATGGCATGACCAAGCTGATTTTCGATAAAGAAAGCCACCGCGTTATTGGCGGCGCCATCGTCGGCACCAACGGCGGTGAACTGCTGGGCGAAATCGGTCTGGCTATCGAAATGGGCTGCGACGCGGAAGATATTGCGCTGACCATTCATGCCCACCCGACGCTGCATGAATCGGTCGGTCTGGCGGCCGAGATTTATGAAGGCAGCATTACCGACCTGCCGAATGCGAAAGCAAAGAAAAAATAGGCCTCATTGCCGATCATTAAAGCTCCCGTCCGGGAGCTTTTTTTTGCCTTTTTTATAAGGAGATCGGCGTTGGGTTGCCGAAAACGACTCGATCGTTTTAATACGCCCTATGACTTTTTCTGTAGAATATAGCCTGAACTGCGACGTTTAAATTTACCTGAATAGCCGGTAGAATTTATCTGGTGATAAAAATCTATTACTTTCAGTAGGTTATTTTTAGA # Right flank : GTTTCAGTTTTAACAGGTTCTGAGCTACTGTCGTAAAGAGTGGCATCCACACTGGCATATCCAACCAGTCAGGTGGAAAACATTAAATTAAATCTGTATTAACCTTTCACGCATAACGTTTCTAAAGCATTACACCCTGCATTGAAGTAAAAACCATCAGTTTTTCAGTCTCATGTGCCAATAAGGCACTCTGCGGGAATACCAAAATCGCGATGCAATTTTCTGATCATCGGTAATGTCAGGCTGCGCTTGCCATTCAGGATCTCATAGACACGGTTCACACGACCAATCGCAGGCTCCAAATCTTTTGCGGTTAACCCCTGTTGATCCATGCGAAATTTAATCGCCTCAACGGGCGTTGGCGCATCAATGGGGTAATGTGCGTTCTCATATTGTTCGATGAGTAAAATCATTACCTCGAGAAAATCACCCTCAGGTGTGCCGACGTCTGGCTGTTGATCAAAAAGTGGTGAAACCGCCTCTAACGCCGCCTGATAATC # Questionable array : NO Score: 6.11 # Score Detail : 1:0, 2:3, 3:0, 4:0.85, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCACGTGCGTGGGGTTAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,7] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCACGTGCGTGGGGTTAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-10.80,-11.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-56.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.18,0.74 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 30257-32420 **** Predicted by CRISPRDetect 2.4 *** >NZ_JNVB01000018.1 Erwinia oleae strain DAPP-PG531 contig18, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 30257 29 100.0 32 ............................. AACGATTTACCGATGTTGGACTCACCGACCAG 30318 29 100.0 32 ............................. CAGCAATCGTTGGTAATAAAGAACTGCCAGTC 30379 29 100.0 32 ............................. CGTTATGGACGGGCCTATATCGTAGAAGATGT 30440 29 100.0 32 ............................. ACCTTCAATAGGCTTATCACGTTCCGCCAGGT 30501 29 100.0 32 ............................. CCACTGTGCCTTTGGTAATCTGGGAACATTCC 30562 29 100.0 32 ............................. CGTCGATAGCCTGTGATATTTTTGAATAGTAC 30623 29 100.0 32 ............................. GCATAGGTAGTCAGCAGTATCTCAGTAGATTT 30684 29 100.0 32 ............................. CCGGTTGCAGCCGATGCAGTGATGAGAGATCG 30745 29 100.0 32 ............................. CCGTCATCACCTTCGGCGGCAATATTGATGGC 30806 29 100.0 32 ............................. AAAATTTTTCATAGCGTTGAAATCCACCCGTC 30867 29 100.0 32 ............................. GGGATTATTTCTGACATGGCTCCAGCAGAGTC 30928 29 100.0 32 ............................. GCGCTGCTGATTGAGGGGTATCGCGATATTGA 30989 29 96.6 32 ............................T CGTAGCGGCTGGCGATGCTGGCGACGACGTCG 31050 29 100.0 32 ............................. GTGCCTACGTTGTGGATGAAATCGCGCACGCT 31111 29 96.6 32 ............................A GTCGCGCAGTTCGTCCGATTTAGATTCCAGAA 31172 29 100.0 32 ............................. AGCCAGGACTTAGTGTCGTCATGCGCATCACT 31233 29 100.0 32 ............................. TTGAGTGCCTGAAAAATTTACAGGAGATGGCG 31294 29 100.0 32 ............................. AGTTGAAGGCGAAAGGCGAGATTCCACCTAAC 31355 29 100.0 32 ............................. AGATCTCTTGTCAGGTTGCAGTGCAACCCGAC 31416 29 100.0 32 ............................. GGGGGAGACGATCATGCGTGAGCAACTAACAG 31477 29 100.0 32 ............................. ACGCGGCTGCTGCCGAACTATCAGCCGTGGAT 31538 29 100.0 32 ............................. GCCGAGAATCAGGTTGCTGTTTTAACACAAGT 31599 29 100.0 32 ............................. GCAGGAGTTAGCCGGGATGCCGACGCCGAGCA 31660 29 100.0 32 ............................. CCCGGGAACTGCCACCGCACCGGCCATTGAAC 31721 29 100.0 32 ............................. TTTTTGAGCCGGCGCGACTGATGGTTACCCGG 31782 29 100.0 32 ............................. CGCGGCCAGAAAATCATCCTGATCGGTATCGT 31843 29 100.0 32 ............................. CGTGCGGCGGGATTCTCCTCCGAGCCGCGAGC 31904 29 100.0 32 ............................. GCTGGAGAGGAAATCGGCTGGTTCATTCAGCA 31965 29 100.0 32 ............................. GCTATTGGCAACAGTATGGCGGTACCAGTTAT 32026 29 100.0 32 ............................. CGTCGGCTTCTTCCACGGATGGCCTTCAGGTG 32087 29 100.0 32 ............................. GAGCCATGCAGTCCCAGCATTCTATACTTTCC 32148 29 100.0 32 ............................. CAATACGATGCGCTTTGTAACTCTTGTTGTTT 32209 29 100.0 32 ............................. AGCACACAAATGCCAGAACTTATTGAAATATC 32270 29 96.6 32 ...........A................. GGCCCAACCCTGCGCATGGGTTATCACCGCTG 32331 29 96.6 32 ...........A................. GGCCTAACCCTGCGCATGGGTTATCACCGCTA 32392 29 96.6 0 ...........A................. | ========== ====== ====== ====== ============================= ================================ ================== 36 29 99.5 32 GTGTTCCCCGCGTCCGCGGGGTTAAACCG # Left flank : CTTATTGAAGACGTTCTGTCCGCTGGCGGCATTTCTCCACCGCTTCCTCCTGTTGATGCTCAACCCATAGCTATTCCTCTTCCTGAAACCTTTGGGGATGCTGGCCACCGGAGTGGATGATTATGAGTATGCTTGTTGTAATAACTGAAAACGTACCGCCCAGACTGAGAGGACGACTTGCCATCTGGCTGCTTGAAATACGGGCGGGCGTATATATCGGTGATGTTACGAAACGAACCCGGGAAATGCTGTGGGAACAGATCATCGTTTTCGCGGATAACGGAAATGTGGTGATGGCCTGGTCGACCAATACGGAGTCTGGATTTGAGTTTCAGACTTACGGTGAGAACAGGCGAATTCCGGTAGATATGGATGGATTACGATTAGTGTCATTCCAACCTGTTACAAATCAATGAATTACAGATCTTTAATAATAGGGATTTTCCGGTAGAATCTTTGTCGGCCTAAAAAGCCTTATTAATCAGTTGTATAGTTTTAGA # Right flank : GTGCGCCTTTCCCGCCTCACGACTGACCGAAGTATGTAACAGTGAATCCACTGGTAAGCGGTGCTGCCAACACGCATTGAAAATGAGTAAAAAGACAAAAATCCGTTTTGTGATCTATATATCTTTAAATTAAAGCTATATAGTTTTAAATGGATGCTATACAGGAGTTTGTCCAAAAGGATTGAATGATGAAGACAACGTTTCCAGAGGATTTTTGGTGGGGATGCGCTGAATCGGCGGCACAAACGGAAGGTGAAGCAGATACGTCCACCTCAATCACCAACTGGCAATATTGGTATCAACAGCAGCCGGAGCGTTTTTTTAATCAGCACGGTCCACGGCATACACGTAATAGCTATTCCCGCTATAAACAGGATGTTGAGCTGATGCATAATATCGGTTTGAATAGTTTTCGGACCTCAATTTCCTGGGCGCGACTGTTACCTGATGGTAAAAATGCCGATCAAAAAGCTATCGATTATTACCGCAGTTTTTTTATC # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGTCCGCGGGGTTAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGTCCGCGGGGTTAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.30,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [66.7-45.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.18,0.74 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //