Array 1 9291-8537 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACJSI010000011.1 Nostoc flagelliforme FACHB-838 contig11, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ==================================== ================== 9290 37 100.0 34 ..................................... ATGCGATCGGACAGCTTTACTCAGAGCTTCGAGA 9219 37 100.0 35 ..................................... CAAGCATCGAAACGGGCGGAGACTTCAGATGCGAT 9147 37 100.0 35 ..................................... AGTTATTCGATATATATGATTCAGTGATTTCTAAA 9075 37 100.0 34 ..................................... TTTGCTTATGCTCTTAGCACTTCTCGTCATTGTG 9004 37 100.0 35 ..................................... TTCGGATGGAGAAGTAAAGGGTAAAAGTGGTGTGA 8932 37 100.0 36 ..................................... ACGCTTTGGGAATATATAGGAAAAATAGAGGATAAT 8859 37 100.0 34 ..................................... TGAATATGTCTATCTTAGTAAATCGTGAATTGAC 8788 37 100.0 35 ..................................... AGATGGCAGAAAACAGCGCAATCTTTATTTGATGC 8716 37 100.0 34 ..................................... AGCTAATTACTTTAATCTTGACCCTGACGGCATG 8645 37 100.0 35 ..................................... ATAAAAGTCGCCTTGAATGAATTTTGTAGCTATAA 8573 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ==================================== ================== 11 37 100.0 35 ATTGCAATTCAATAAAATCCCTATTAGGGATTGAAAC # Left flank : AACAAGTTGACCGCCAAGATCGTTTTATGTTTTCTCTGTTGTTTATAGAATTAACAGACCTCATACGCAATTCTTCGCTAGAAAGGGGAACAAAAGAGGTTCTGATTAAAACAGCTTTTAGAGAATTTGCTTGTGCCATAACAGACTTTGAAGACGTTGCCAAGTAAGTTAAGTCATCATGGTGTTGGCATTGCTTTGAAGTCAGCTAACCTAATCGAATAGGATATTTATAAAGTCAGCAGCTTTCTAATCGGATTAGTTTTTTCACTGAATGCGCGGATGGGTAGGTGTTGGGGAAGGGGTGACGACAAAAATGGCTGAATCGCCCTACATGCAATCACTTGAGAGAATTAGCATTTCTAAACCATTCGCGCACCTTACCTGGACTAGTTTTCAGCCATTTGCCTTTAGCCAAATCACAACGCCTCGTGTTATTATTTTCATGTTCGCGCAACAGAACCTTGAAAATCCAAATAAGGCAAAGCTTTCAGAAGCCAGCG # Right flank : AGTGCCATTGCAATTACCTAAAATCCTCAATGTGAAGACAATTTAAGATAAGCGATCGCTTTCTTCAGAAGATGCTATGCATAGCTTACCGCACCTAGAGCGAGATTGCTGAGATATCAGGCTAGTTTGCATAATTTCGGATAGATTACCGCAAATGCGCTGATACTTTAATTTCCTTTCTTCATAAATTCCGCAAAAACACCGTTACGCTATTTGGACTTGTGATCAAAACTTAGAGCATCAAGTTTATTAGGGCGTGTTTATGACCAACCCTGTAAAGACGGTTATCCAAGTCAATGTGAAGATGGCTCTAGAAGTAGCTCAAGAATTGGAGCAAGCTCCATACACTCAACTCAGTACTTATTGTTTGGAAATTTTACGGGAAATAGGGTGTCCTGGTACTGAACTTCCACTGAACTTACAAACTCGCGATCAGCAACTAAACTTTATCACAGGCTTTGCATCTTATGCTTTTGGGGAGGTACAAAGTGTATAAAGCA # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTGCAATTCAATAAAATCCCTATTAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:70.27%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-7.20,-7.40] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [63.3-55.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.5 Confidence: HIGH] # Array family : NA // Array 1 260198-261087 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACJSI010000001.1 Nostoc flagelliforme FACHB-838 contig1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ==================================== ================== 260198 37 100.0 36 ..................................... TATTGATGATGCCTGCGGTGTGCGTAGCGATCGCCC 260271 37 100.0 35 ..................................... TTTATTATTTTTAGAGTGACGCTTGATTCACGACT 260343 37 100.0 34 ..................................... GAACTAAAGCAACTCGACTTTAAAACCCATCTCT 260414 37 100.0 36 ..................................... GTTGATACATCATGTCGGGAATTGAGAAGCGGAAAT 260487 37 100.0 35 ..................................... AAACCTGGGGTGAGTTGCTGCGTCGTCATTGGAAC 260559 37 97.3 34 .....T............................... TGCATTAATATCCCCATCGGGTAGTTTGAGGCTG 260630 37 100.0 33 ..................................... CAAAAACTCTTTGTGTTTTTTATGAACAAAGTA 260700 37 97.3 35 ............T........................ TTAACAAGTAAGCTTTTCCGTTCAGAGGCTTGAAG 260772 37 100.0 32 ..................................... GCAGTTGTAGGCACTTGCTTGCTTACTGGCAA 260841 37 100.0 35 ..................................... AAAGTAAACAGGGAGAAAGCTAAGGAGACAATTTG 260913 37 100.0 35 ..................................... AGACAAGTGTGAGGCTTTGCGATCGCTACCTCAAA 260985 37 91.9 29 ..........T.........A...........A.... CATTAATGGGCATGGGAGTGAGGTCGCCA 261051 37 89.2 0 AT....................CA............. | ========== ====== ====== ====== ===================================== ==================================== ================== 13 37 98.1 34 GGTACAATGACCCTTCCCGTGTTGAGCGGGTTGAAAG # Left flank : CGAGATTTAGTGATCGCTGCTTACCATTTTCGTCAAAATAAATCTTAATCTTCAGATTGAGCAAATATACTGAACCTTGACAATAAAATAAGTAATAGCGCCGCAGTTCATGTTCTTTGTAACCGCTGAACTGTGAAAAATATGGGGTAGTTTGACTATTGGAAGATAGTCTTGCTTTCTGACCCTAGTAGCTGCTCACCCTGATGCTGCTGTCTCCAGACAGGAATAAGGTGCGCTCCCAGCAATAAGGGCGCGGATATACTGCTGTAGTGGCTACTAAATCACCTCCGACCAAGGGGGAACCCATACCAATCCTTGTTTTCAGGCATTAGAAGAGATTAAAAATTTTCAGTCGATTCGCGCTTGCTTGCGGTGAAAGGGTTTTAGCGTTTAATGGCACACAAATTGCCCATTCAAACGGTAGTTGAAGAAGGGTGGAATATAGATCCGCGCTATCAACTCTGGAATCCTTCACAAAACAAGGATTCTATACAGGAAGG # Right flank : GAAAATTTTCTATATCGACCCCAAGGGCGATGGTAAGTTACAATTCCTTCCGGCAAAAATGGATTGAAGATGTAATACCTAGCGATGAGCAAGAAAGGACAAGTTATATAAATTTTTCCAGTGCAGGGCTGGTGAAAATATAAAGATTACGAGATATGGGTATGGGTTGAAAGGGTTCAACTCCAACCTGCTTAACTATAAAGAACAAAAGTTCTCTGTTTAAGTAAGGTAGAGTAAAACTTTTTAAAGCTTAAGTTAAACTAAAGCTTATGGTCTTCTAGTTGGCAAATCTGATGTTGACCTGTCACCGCACAAAGTCGATAAGTCACTAATATTGCGACATTAATTTGTGAACAGTTGTCTCAAATGAGCTACGACACAAATTAGTGAAAGAGCGACATTAATGTGTGAAAAACGACATTAATTTGTGAACGGCGACATCTAATTTGTGAATGTACATAACTAGAAGCTGAAACCCTTATGTAGTCTTACTTTTAAAA # Questionable array : NO Score: 3.16 # Score Detail : 1:0, 2:0, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GGTACAATGACCCTTCCCGTGTTGAGCGGGTTGAAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [8,9] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-7.40,-6.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [58.3-60.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0.37 Confidence: MEDIUM] # Array family : NA // Array 1 16852-17393 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACJSI010000110.1 Nostoc flagelliforme FACHB-838 contig110, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ======================================= ================== 16852 37 100.0 36 ..................................... ACACTAGTTGCTGTAGTTCCTGTAATATTCCGGCAG 16925 37 100.0 35 ..................................... GCGGATGTTGCTTTCTGCAATTGCCCCCAGACCGG 16997 37 100.0 31 ..................................... AAATCTCTGCCATTGTACCAGTTGCCCAAAA 17065 37 100.0 35 ..................................... GAGTAGACTCCCAGCACCAAGCGCACCGTTACCAG 17137 37 100.0 39 ..................................... ATGTGGGAGCAACAATTGGTGGAATGGTTGGAGGATATC 17213 37 100.0 34 ..................................... ATTTGGTTGGTTTTCCGCCGGGGTGACGGCTTTC 17284 37 100.0 36 ..................................... GACTCGCTAAGAAATATTACAGAATACTGCGCTGAA 17357 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ======================================= ================== 8 37 100.0 35 ATTGCAATTAACCCAAATCCCTATTAGGGATTGAAAC # Left flank : TTAGCCAATGCCTCAAGATAGTTGTCTATCGACACACAGAGGGTGAGCGCTCAACACAAAATTTAGATATAAGTATAGTAGATCAGTGGGAGCAAAGTGAAGCGGCTGCCAGCGCTCGTCTCAGCAATTGTTTACCGTTCATAATTTCCCTGGTGCAACGCGCTATTTACAGGCTAATCTCAAACTAAACATCACATCGCCCCGCAAGAGGATAAAACCCTGCTATAATCCGCCTATAAGATAGCTTGCAATCAGACTTGTTTTTTGCAACAATGCGCGGGAAGGTAGGTGTACAAAATAACAATCTGCAAAAAATTGCTGTATTCCCCTATGTGTGGGCACTTGAGTGCGTTTGCACTTCTCAACAATCCGCGCACCTTATAGAGACTAGCTTTCAGCGATTTGCATCTAGTCAATTTCAAAACAATTGTGTTATGATTCTTGCATTCGCGCTATTGAACCTTGAAAACCAAATACAGCAAAGCTTTGAGATGCAGTCC # Right flank : CAGCGATAGGTGAATCATCGCTGACACCTCTCTTTTTTACAGCACCCGTGAACGCCTGTTTACCCTCAGTTAATTGGTGCAGAGTACTACCAATACTATGCGGTAATAAACCTATTGCATATAAAAAACCCTGGAGAAATGCCAACTCTATCGAGATTGCAATTTATCTAGGGTTGTAAAGTATATATTTATGTCTCGTAAAAACGTAAACTTAGTGTTCCCAAAAATTTGGGGATTTGAACATTACATAGATGTGATCTTGGGGTGAAATGAGCAACCGTGCAGAAAGTTACGCTAAGGAATTGATGAGCCATTTTCAATATCCCGATCGCTAGGAATAAACCTGTACCAATTGATCTGTCTGAAATTTAAAAGCCTTAAATCCTTACTGTGCCGTACAAAAAAGCTGTACCAAATAACCTATAGGTTAATTGGTACATTGAGAATCGCCAAAAATCTTGATTGAAAGAATGCTTATCCAGCAAGGGTTACAGCCTTAG # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTGCAATTAACCCAAATCCCTATTAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:64.86%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-7.40,-7.20] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [56.7-51.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.5,0 Confidence: HIGH] # Array family : NA // Array 1 92218-92757 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACJSI010000022.1 Nostoc flagelliforme FACHB-838 contig22, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ====================================== ================== 92218 37 100.0 33 ..................................... TTCAAAAACCTATTTGACTGCGTAAAGCCTGGG 92288 37 100.0 37 ..................................... AAATTATGCTCATTGCTGAAATGGGGGCAGGTAAAAG 92362 37 100.0 34 ..................................... AGCGATACTCGCACACTCCTTAAGAGTGATGCGA 92433 37 100.0 34 ..................................... AGGACTTGGTGATGGACTTGGACTTGGACTTGGA 92504 37 100.0 38 ..................................... AACTAATTCCTGGTTTTTGGCAGCCAGTTGGGATTGTA 92579 37 100.0 34 ..................................... TTGTTAGCTGCTGCTCCTTCTTTTGCACAGACAA 92650 37 100.0 34 ..................................... TAGAATCATTGCAGATAAAATTTGTCCTGCTCAT 92721 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ====================================== ================== 8 37 100.0 35 ATTGCAATTCATCAAAATCCCTATTAGGGATTGAAAC # Left flank : ATCCTGCCCTAGCGCGTGGCCCAAAACCCGTCAAACCCCCAGTCAAAGTAGAAACAGAAGAACTTGAAACCGAATCGGAACCGAACTCTGAGGAGTCTCAAGACTAATATTATCAAGTGTCGCGTGTGATGTGGGAGGCTATAAGCATACAAAGACTGGGATTTCTGGCTCTGAAGACAGCGATCGTTAGTGCCCCCCATCACCATTAGGTGATAACGTAGCGTCTCACAGAGTTCCTGCATATTAAATGCGCGAAAGAGTAGGTGTATAAATTCCCCAGCCCGAAAAAATTGCTTCTATGTCAACACCAGTAAGCATTTTACCCCACTAATTGCCCAATTATCATCCGCGCAATCTCTAAGATGCTTACAAATACTAGCTGTCAGCCTTCAACGTTTCCCGACACTATTCCCAAAGGAATTCTCTAATGCTATGATTGCTCTAGAATCGCGCAACCGCACCTTGAAAACTAAATGTAGCTTTGCTTTCGGGCTTGCGCT # Right flank : CAAATTACTCTAATACCTGGAAAGGAAGTTTTAAAAGGGTTTGAGCTTAATTTTACATATATTAGCATTGCTGTATTCCTACTTACCCATATTTAGTGTTTATTGTCAATACAGAAATTCTAAAAGATATTGCTGAAATCAATTTGCTTAATTTGCAACATCTCAGTACAGTAAACTTACAACCAGTTTGAAGGTCATAAAAATGACGACTCAAAAAAGGATTGCTGTGGTAACAGGCAGTAACCGAGGGCTAGGATATGCAATTTCTCGTCAATTATCCCAAATTGGCAACCGCGTAATTCTGACGAGTCGTAATCAAACAGATGGCATTGCTGCCAAGCAGCAGTTGTCCAGTGAAGGGCTTGATGTTGACTATCACACGCTGGATGTCAGCAATGACGGAAGTGTGCAACAGTTTACCGACTGGCTACGTGAAACTTACGGCAAGGTAGATATTCTGGTCAATAATGCAGGCGTGAATCCCACAACTAAGCCGGAGG # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTGCAATTCATCAAAATCCCTATTAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:67.57%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-7.40,-7.20] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [51.7-73.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.5,0.27 Confidence: HIGH] # Array family : NA // Array 1 76672-76853 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACJSI010000027.1 Nostoc flagelliforme FACHB-838 contig27, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ===================================== ================== 76672 37 97.3 37 ........A............................ TCTTGAGGCTGAGAAAGGGTTTCAATAAAAGTTTCTT 76746 37 100.0 34 ..................................... CTAAAGTTAAATTCCGCAATCTCTTTGTCTACAG 76817 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ===================================== ================== 3 37 99.1 36 CTTTCAACCCGCCTCAAGCTAGGAGGGGCATTGAAAC # Left flank : ATTCAATCTGCCAAGAGTTGTTTGTGCTATATGTCAACCTGTGATTAGGATTTTCTAGCGATCGCCTAAATACTACCAGAAACATCCAGTTAACCCACTATCTCTACCTCAGAATCCTATGCTATCATGGTTTAACTAGCGTTCTATGGCTACAAAATGGTTACTAAGATACCTTAGAAACATCAAAGTAGTCCAGGGAATCTTGCTGTGGCGGCATAGCCAAGTGGTAAGGCAGAGGTCTGCAAAACCTCCACCCCCGGTTCAAATCCGGGTGCCGCCTTTTTGTACTGTACATTAACTAATTATTTGTCACTGTTAACAGATTGATGTCAATGTTAACAAATTAAATGTCACTGCTATATGTATGTGGCATTTTTTAATAGCAGACCTCTGCCTTACCTTTCAACCCACCATAAATAAATTCAGTAATGTTTGAACTGTTATATCCAAACATTATTTTTTAAGCTGATTTTGAGAACCAGCATTGAAATATTCCAATT # Right flank : CTCCGCGCCTGAAACCCTTTATTTATTAAGTCTCCTAGAAGCACTTTTGACAGGACTACCAAAACCACTTGCTGGTTGACACTGAAAAAAGTAAATCAAGTGACAGCCCAAACTCTAGAAAGCATACGAACAAAGGGCTTTAAAGTTTTGGCAGGAGTACTAGGGAAATCGCCCCCGCTTTGCCATGCCAAAAAATAATTAAGGTGGGTTCCTCCTTGCTCGGAGGTGATTCAGTAGCCACCACTGCGGTAAACCCGCACCTCTATTACTGGGGGCGCACCTTATTCCTATCCACAAGGGACAGCAGCATCAAGGTGGGCAGCTACCAGGGTCAGAAAGCAAGACTGTTTAACAGCAGTCAAACTAACCCAAATTTACACAGCACAGAGGCTTATAACAAGCATGAACTGCGGCGCTGTTGAATTTTCTTATTTTATTATCAAGGTTCGGTGTTTTGTCAATCAGTTTATTTTGCGGGAATAGTAAACTGCGATCGCTAA # Questionable array : NO Score: 5.31 # Score Detail : 1:0, 2:0, 3:3, 4:0.95, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTTCAACCCGCCTCAAGCTAGGAGGGGCATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: F [10,7] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-8.30,-8.10] Score: 0/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [75.0-56.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.14,0.41 Confidence: HIGH] # Array family : NA // Array 1 829-77 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACJSI010000341.1 Nostoc flagelliforme FACHB-838 contig341, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ====================================== ================== 828 35 88.9 36 ......................A-........CT.. TTTGCTCAATCATTAAGTCTCGCGCTTTGTAGGCTG A [810] 756 34 88.9 37 ..........-...........A-........C... CTTTACACGAGGTGCGACAGCAACGACCTGATAGAGG A [739] 684 35 91.7 36 ......................A-........C... TCTGCCTAAGTAGTAGGCTTTACTTGGTTGTATATG A [666] 612 35 88.9 34 ......................A-........CT.. TCTTGGTAACAAGTTTACTACTCTCTAATGTTAG A [594] 542 35 88.9 34 ......................A-........CT.. CAAATCCTGCCAACAACTCGTATTCAATCGGGGG A [524] 472 36 100.0 36 .................................... ATATAGATAATTTGCGCTACTTGCCATCTAGAAAGA 400 36 100.0 35 .................................... CGTTTCCAAAAAACATCAATTGAGCAATAGCGCAA T [381] 328 36 100.0 35 .................................... GATGTCTAAAGCGTTCAACCTTCCCGGTTGATACA 257 36 100.0 35 .................................... CCCCTGAAGCAGTCCATTCCTTGCGCCAAGGCAAA 186 36 100.0 38 .................................... AGAAGGATTAAGTAAATCGGCTAAGTGAATATTTGTGA 112 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ====================================== ================== 11 36 95.2 36 CTTCAAAGGGGCTGCACCATAATTGGGCAGTTACAG # Left flank : AACATATTTTTGCTGCTGCTTACAGATGCTTAAAAATGCTCTCGAATACCGCTTAATTTCGAGTCAAGCAGCATTTCACCTTCTCTCTAATAATATTTTTGGCTTGGTTTGATTCAAGCCTTGTTTTGGATGCTTAATTTTATGAACAGAGTGTTTCAATCTCAGCATAAGCCAAAATATCGGTAACTGTTTTAGCTTGATAATTAGTGTTTTGTACTTACTTTGTTTACCATCATAAATTTCAATTGATGATGTATCGAAAAATGTCTTACATCAAGCGATGTGAATTGATTTTTTATTGTTTGTGAGAAATTTCGGATTAAGTGGCATCGGAAAATCAAAAACAAAGGTAATGTCAGTTATATTGCAGCTTAGATGCCGATTAGCTTACATAGAATTTAGTTTTTAGTGATCGGTCGTTTTTTATCTGACCTCACAAAACATGTTGCTCCTGCTCTACTTGAGTTTAAGCATAGACCGGAGGATTTTTAAAGAAAACA # Right flank : GAGCAGATGTATCAAATACTTCTAATATGCGGTTTTCAAGGTTCAGATGCGCGGCAGTTCAATAGTTATTAAATTTT # Questionable array : NO Score: 3.02 # Score Detail : 1:0, 2:0, 3:0, 4:0.76, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTCAAAGGGGCTGCACCATAATTGGGCAGTTACAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [8,10] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-8.30,-10.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-16] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [58.3-60.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.41,0.74 Confidence: LOW] # Array family : NA // Array 1 157278-156600 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACJSI010000004.1 Nostoc flagelliforme FACHB-838 contig4, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ==================================== ================== 157277 37 100.0 36 ..................................... CTGTCTATACTTACTACGAAGACAAAGACTTAACCC 157204 37 100.0 32 ..................................... AATAAATTATTCTAGCGATCGCCATATCATAA 157135 37 100.0 35 ..................................... GATAGCCTTCGTAATATTACAGAATACTGCGCTGA 157063 37 100.0 31 ..................................... TTTATGCCAATCTTCTCTTCCTGTTGGGTAT 156995 37 100.0 36 ..................................... ATAGCGACACTGCCGCTTTGATTCTGTCCAATGGCT 156922 37 100.0 34 ..................................... GCTATCTTTCAACCCTGCGGAGAGGTCAACGCCT 156851 37 100.0 34 ..................................... CTACTAGTGCGCTTGCCCTAGCTGATGTCGCCTT 156780 37 100.0 35 ..................................... ATCAAAACCAAGACAGCGACGGCAACCAAAAGCGC 156708 37 100.0 35 ..................................... AGCAAGGCAATCTTTATCTGCAACATCAGCGATCG 156636 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ==================================== ================== 10 37 100.0 34 ATTGCAATTCAATAAAATCCCTATTAGGGATTGAAAC # Left flank : TTCCCAATATGCCAGGAGCAGTACCTTGGACAGCAACCCAGGCACTCAATAATAGTACATTACCCTATGTCGTCCAGTTGGCGAATTTGGGAATTAAGGCACTGGAAGTTAACCCAGCATTAGCTAAGGGTGTGAATGTGCAGAACCATCGCTTAGTGCATCCTGCTGTGCAAGAGGTATTCCCTGATTTGGTAAATTAAGGCGTGCAAGGATTAGGCGATCGCTTATTGTAATAGAGGTAGCGATCGGTAATTAGGCTAATTTCCTTGCCAAATGCGCGGATGGGTAGGTGTACAAAATGAGAAGGGGCAAAAATTGCTGTACGCTCCATCTATACAAGACTTTGAGGGCAATGGCACTTTTAAACCATCCGCGCACCTTTTGGGGACTGGGTTTCAGCGATTTGCATCTTGTGTTATGACTATTGCCTGTGTTATCATTTTCCTATTCGCGCAACTGGACCTTGAAAACCAAATACAACAAGGCTTTTAGACCCCAGC # Right flank : CTTGCTAAGGCACTCTACTAGCCCTTGGAAGTAAATTTTAGAGAAATTGTTGAACGGGTATGATTGCCCTTTGAAATCAATGCTAAACTCTGTTGCCATGTTGTTTTAAGTAATATTTAATACAATGTTCGTTTGTCTGGCTTTTGGGGAGATATAGAAGTGAATCAATCTACTCGTATAGGGCAAAATCAATGTCTAATCCCCAAAAGCCTCAATCTATCGATGAACTTGTTGCCATCCGCCAAGAACTAGTAGGACTCAGGAAAGACTTGAAGGAAGCAAGAAAGCGTTATTGGCTTGATATTGCCTCTGGCGTTGCAGCCGCGCTGATTGTCTTATCTGTACTCTCTAGAATGATTGGAACTAGATAGCTAAAACACAAGCGATCGCACCGGTGAAGTAATTTTCACTCTTAGCGATCGCTTGTGATTGAATCAATCCCTCGACTCAGGATTATGCTAATTATAATCATGAATCACCTCCGAAGGCTTGGTAATAAC # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTGCAATTCAATAAAATCCCTATTAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:70.27%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-7.20,-7.40] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [60.0-55.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.5 Confidence: HIGH] # Array family : NA // Array 1 10454-10703 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACJSI010000141.1 Nostoc flagelliforme FACHB-838 contig141, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================== ========================================= ================== 10454 34 100.0 41 .................................. TATCTCAATCTCTGATTGTTGTTCGATGAAAGCTTGAGACT 10529 34 97.1 37 ..........................T....... ATCTCATTATCCAAAATAAATAACCCCTCTCTAACCT 10600 34 100.0 36 .................................. GTGAAGAAACAGTTCGATTTGAACTTAAACTCTACT 10670 34 97.1 0 ........................T......... | ========== ====== ====== ====== ================================== ========================================= ================== 4 34 98.6 38 GAGCAACGCCTAACGGCATAAAGCCACGAATCAC # Left flank : ACTTTCTACCAAAATCTAGAGGGGAAATGGGTAGCACAACCCTGTAATAGGGATGATAGGCCATGTTGTGATAGTCCTTTAGCAGCGCAAATAATCATCATCGCTGTTAATGGTTTACTGGTAGCCGACGCAGCATAACACACAAAGCATTTATCCCATCACTTGGAGACGTGATTCAGTTCACGTCTCTTTCTTATGTAGAGGAATAATTGGGTTGAACAATTTAAGTTTTACTACAGCAAAAATTTATGCGATCGCATTTTTGATATTTAGTAATCAAGCTGACTCTAACTCTTCTGTGCTCATTGTCGAATTTCACCTTCAGCTTTACCAAAGTTAATTTTCGTTCCTCTAATAGGAGTTACGCTACGCCCTGGTTCTGCATCTTTAACCGTACCAGCGAAGGTTAGCGGAAGTTGCCGAAGGAATAACCCAACCTTATCAAGCCACGAATCACTTTTGCGATCGCAGTCAGTAATTTAACCTCGATATTTGAGCAA # Right flank : CAGCAAAGTTCAAAACCCTTATACCAATTTTGTATGAAGTTGCATAGAATCAAAGAGCTATAAAATATGCTTGGCAAGCATTCCAGCTTTCTAAGGTTTCATGCAGCTTCACAATAATTTGGTATTAACTGAGGAAGCTTTATTGACAATCTTACAAGTACCTTCCAGATCGAGAAACCAAAAACACAAAACTTACCAAAGTTTCCCTTACTTTCAGCCCCTCAAACCCAGTGCCGATAAGCTTTCCCAAAAATGGCAAGCACTTTTTTTCTTATCTCAATTACCATATCCCTTACCGTGTAAACCTTCCCGCCATTCTTTGATCCTAAATTCCCTTTCCCATAAGTGATACTTGTCAAATTGGAGATTGAATTATCGTCCACGCCAAATTAGGAGGTGGTGAGCTTGGCATTTCCTCAATCCGATACCTCAAAAATCGGGTATTTCCTGACCCCACATGGTCAACCCAATAAGGTAAAGTAAATCTGCCTCGATTATCT # Questionable array : NO Score: 2.79 # Score Detail : 1:0, 2:0, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GAGCAACGCCTAACGGCATAAAGCCACGAATCAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [13,3] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-4.00,-6.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [60.0-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0.37 Confidence: MEDIUM] # Array family : NA // Array 1 194-366 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACJSI010000581.1 Nostoc flagelliforme FACHB-838 contig581, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================== ======================================== ================== 194 31 96.8 40 ...T........................... GACATTGACTCAGATGAGCCACTTTTACCTGATTGTTACA 265 31 100.0 40 ............................... CAAATTAGTTTGGCAAGAGTTGATTCATTTGCGAGTTACA 336 31 96.8 0 ........C...................... | ========== ====== ====== ====== =============================== ======================================== ================== 3 31 97.9 40 ACACCCTCTTAGTGAGGGTGAGGATTGAAAC # Left flank : ACGATCGCCTGCATATCGACACTACGTTTTCGACCACCGCTTTTTGACTTAGGAATTAGTCCTGATAGTATTTCCCACTGTTCTAAAGTCAGATTACTTGGGTACGATGGATTCATAGCTCTCATAACGCTGTCATACTTAAGTATTTTTTCTAATGACAGGATACCGTTATGTGGGCTTTCTTACTTCTCAGA # Right flank : CCTTTGTTATTTCTTGCGCTTGCAATAGATTTAGCTCACTAATTATTTATTTTCCACCTAATCCCGGAAAAAACTTATTCCAAACACTTTGTCCTTTAGGAGTTGAATCCCCTTGCATAGCACCAAATAATCCTTGCTGTTGGGCTTGAATTTCCTGCATATTGAGAGAATGGATCGTCTGGGCTAACTCTGGATTGTCTTCTAACAATTCAGCCTCAAAACTTAACTCCTGCTGTAACAATTGAGCATTTCGGCGCAAGGAAATCTGCTGATTGTGTCGCCGTCTGATAAGGGATTCAGTCAGATGTAATTGCTCTTCAAAACTTAAATCATCGTATTCACTGTTATACATAAGAATTCTTCTCCGATTAGCTTAAAACTTAATTTTTAGGAAAATTAACGACACTGTTCAATTCATTAAAAATGTTTGATTCCTCCATAAAGTAGCTGATATCCCAGCCTCAATCTCGTAATAAAATCGTCAGTATTGCGATTACCCC # Questionable array : NO Score: 5.57 # Score Detail : 1:0, 2:0, 3:3, 4:0.90, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ACACCCTCTTAGTGAGGGTGAGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:51.61%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-2.30,-1.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [1-1] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [65.0-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,0 Confidence: HIGH] # Array family : NA //