Array 1 7113-9219 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAELTO010000053.1 Xylophilus sp. ASV27 NODE_53_length_29923_cov_20.296688, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ===================================================================================================== ================== 7113 32 100.0 34 ................................ AAGAGTGGGTGCGGCGCATGAAGCGCGAGTTGGG 7179 32 100.0 35 ................................ ATCAGACCTTCTTGCCACCGGCTGCCGCCAGCTTG 7246 32 100.0 34 ................................ AACGCCCAGCGCCCCGACCACAAGCTGGAGCACC 7312 32 100.0 34 ................................ CTCGGAGGTCTGCGACCACGCCGAGGCCCTCTGC 7378 32 100.0 34 ................................ ATGCCGCCGGCGCGGTAGTCCTCCATCTTGCGGG 7444 32 100.0 36 ................................ GTGTTCACCGGGCCATACTTCGCGCGCTCTGCGCAG 7512 32 100.0 35 ................................ TGGCCCGTCCGTGAGCGGCTGTTTGTGGAACACAT 7579 32 100.0 37 ................................ TGGATATGGCCGTACTCCACCAGGTGGCCGTGCGGCG 7648 32 100.0 35 ................................ TTTCTGAGCGGGATGTTGCCGAGCGGCGAGCACAG 7715 32 100.0 35 ................................ AGCCCGGAGGTTGCCGCTGTCGTCGGCCCCTACGG 7782 32 100.0 33 ................................ AAGTGGGTGCGCTCTGCGCTGTCCTGACCACTG 7847 32 100.0 35 ................................ AACGGCATGAACGCATCATGCGGTCGACCAGTAAT 7914 32 100.0 35 ................................ ACGGCCGCTGAGGCGTGCGCAAATGCTGGCATAGC 7981 32 100.0 34 ................................ GACGCGCTGAAGACCAACATCGGCGAACTCTACG 8047 32 100.0 35 ................................ CCGCTGGGTCTATGTCTTGCGCTGTCACACGCTCG 8114 32 100.0 36 ................................ ATCCCGCAACAGCACAGCACCGCGGCATTCTCGCCG 8182 32 100.0 35 ................................ CCGAGCGCGGCGCAGCGCACTGACGGCCTGTTCTG 8249 32 100.0 36 ................................ ATCGGTGACAAGGCGCAGTTCCAGAACGGGTATGGC 8317 32 100.0 35 ................................ ACCGGCTGCGCGCGGACTTCACCGAGCAGTTGGCC 8384 32 100.0 35 ................................ GCGCGCGCAGCGCCGAGCTGACCCAGGCCCTGCGC 8451 32 100.0 36 ................................ TGCACACCCAGCGCTCGGGCAGCGGCGTCTATGGGG 8519 32 100.0 35 ................................ AAGGAGCTGGGCTACGACAGCATGCCAACCTCGCG 8586 32 100.0 34 ................................ CTCGCGCATATTCCAGACCGAGGGCGCAGCAGGT 8652 32 100.0 35 ................................ GACAGCAACAGCATGCCCCCGGCAGACGACCAGGC 8719 32 100.0 34 ................................ TTGTCCGACTCCTCGGGCTCCTTGCGAACGGCCT 8785 32 100.0 35 ................................ AGCCAGGCCTCGATCTGCGCGGGCGACATGTTGGC 8852 32 100.0 37 ................................ GACACTGATCCCCAAGCAGAACGCGCGAGCGGGAAGC 8921 32 100.0 35 ................................ CCGCGTCACGATGCTCATGGGCCGCGGCTTGCTGT 8988 32 100.0 35 ................................ GGTCAATAGAGGCTGGGATGCTCCGTTCTTGACAG 9055 32 100.0 101 ................................ AACGTGTACACGGTCCAGCAGGCCGCCCTCCGCTCGCCGCGCCCTACGGGGCGCTACGCTTGAACGGTCCGTCTTTCGCGGCAGAGCTCAAGGGCGCAAAG 9188 31 81.2 0 .......-.....T.C..A..C..G....... | A [9199] ========== ====== ====== ====== ================================ ===================================================================================================== ================== 31 32 99.4 37 GTCGCGCTCCTCGGGGGCGCGTGGATTGAAAC # Left flank : CTGCGACCCGGCGCAGGGAGAATCGCTCGCCGCCTTCGTAGAGCGCACCGCAGCCGGCCTGCAGCTCGCGCTGGAGCACCCAGGCCCGGTGCTGGTGGTGGCCCACGGCGGCATCCTGCACGCCCTGGCCGCCCTGCTACAGGTCGAAACCACCCCCGCCCTGTTCGCCAATGCGCACCCCCTGCGCCTGGACCGCACACCCCAAGGCTGGACCGCCACGCCGCTGGCCGCCACGGCGCAGGACCAGGCCAGCCACCTGTCCTGACCCGCACCGGGCTGCCTCCCGCTGGCGGCGCCACGCCCATCACCGGGCGCAGAACTTGACAGCGAACCAGCAGCGTCCGGCGTTCCCCCATAGCGGTTCGCACGCCGCCAAGCCGTTGATCTCCCTTGGTTTTGAAGCGGCCCGGCGGCGCTCCGGCGCAGCGGGGCTTGGCTTTCGGGTGCTTCGCGGAATACGGGGAAAAGGGCATGTACCGGCATTGGCTTATAACCACGCG # Right flank : CACCAACCAGCCAAGCCAACTCCGTGCTCGAACAAGCGGGACAACACCCCACCGTTTTCCGCTCTCAGAAGTTGTGCTTGATCCCTGCGTAGAGCATTCGCGTCCGGGCGCCTGCGTCGGCCACGGCCATTTGCAGGCCGCCGGTGAGGCTGCCGTTCCACAGGTTGTAGCGGCCGCTTCCCTGGTTGCGCAGTTCGATCACGGACACATCCAGTTGGGTGCGCTTGCTCAGCGTGTACTGGTAGCTGGCGGACAGCATCCTTGCGCCCGAGTTCTGCAGGGCCGCGCCGTTGACCTTGGTCGACTGGGCCTGGCCGTAGGTGGCCGAGACCAGGTGCTGGCCAAACGTGTAGCCCACGGGAATGGCAAATGCCAGACGGTGCTGCGACACGCCGCTCGTGGTGTCGGTGACCTTGTTGCGATCTGCGATCAGGCCGACGCGCCAGGTCTGGTCCAGATAACCCAGCGCGATTCTGTCTGCGTTCTGGTCGAGCGGCCCC # Questionable array : NO Score: 9.05 # Score Detail : 1:0, 2:3, 3:3, 4:0.97, 5:0, 6:0.25, 7:-0.17, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCGCTCCTCGGGGGCGCGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: R [4,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGCGCCCCTCGCGGGCGCGTGGATCGAAAC with 91% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-6.30,-3.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [41.7-40.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.78,0.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 5583-9694 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAELTO010000136.1 Xylophilus sp. ASV27 NODE_136_length_9813_cov_18.134421, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 5583 28 100.0 32 ............................ GCCCACCGCGCTGCGCCTGCGTTGGGCGGCCC 5643 28 100.0 32 ............................ TCCAGAGCCATCAGGTAGTCACCGCATTCAAC 5703 28 100.0 32 ............................ AGCCGGCGCACCCGGCTGTGCGCGACGCGGCC 5763 28 100.0 32 ............................ TCGAAGTCCTTCAGGATGTACTTACTGACGTA 5823 28 100.0 32 ............................ TTCAGCGCGTTCAAACAGCGCTGGTTCCAGCC 5883 28 100.0 32 ............................ TTACCGTAGTCAGCCACGCCGAGGCCGAAGGT 5943 28 100.0 32 ............................ GCTCAGGTTGGCATCGCTCAGGTCGGCACCGC 6003 28 100.0 32 ............................ GCCCGCCTGCGCAAGGCTCAGGACTGACGGGA 6063 28 100.0 32 ............................ AGGCCCGAGACGCTGGTGTTGGAGGCATTTGC 6123 28 100.0 32 ............................ GCGTGATGCGCTCGACCCACGCTTGATCCAGC 6183 28 100.0 32 ............................ AGGCTCCACTCGGACCAGAGAGCGCGATGACC 6243 28 100.0 32 ............................ ATCATTGGCAAGCTGGCGGACGCCGGCATCGA 6303 28 100.0 32 ............................ ATTCGGAGCCTCTACATGGTCCTCAACAACAT 6363 28 100.0 32 ............................ AGATAGGCCATCCCATCAGCCAGCATGCGAAC 6423 28 100.0 32 ............................ AGCTCGTCCGTGCCGCGCACACGCACGCGCCA 6483 28 100.0 32 ............................ TGCAGCGCGTCGCGCAGCTCGCGGAACTCGCC 6543 28 100.0 32 ............................ TGGCTCAAGTCTCAGGCGGTGCAGGCGTTTGC 6603 28 100.0 32 ............................ TGCGGGATGTAGAGCCAGCGGCGCAGCACCAA 6663 28 100.0 32 ............................ GATAACCAGGACGTGCCGCTGGAGGAATATCC 6723 28 100.0 32 ............................ AACGGCATGGGTTGGAGCCGCTCATGTCCTCG 6783 28 100.0 32 ............................ GCGAGTGGCCATGGTTTGCCAGAAAGCGTGAA 6843 28 100.0 32 ............................ ATCCCTGAGGCGCAGTGCGTGCTGCGCAACGG 6903 28 100.0 32 ............................ ATCACCCGGAAGAACCCATGAACATCCAAACC 6963 28 100.0 32 ............................ TTTGGCATCAGCAACGGCAGCAACGCCATCGG 7023 28 96.4 32 ....................T....... CATGCGCGCTGACACCGACTCGAAATCGATCC 7083 28 100.0 32 ............................ AGGCGCTCGGCCAGGTCCTCGGCGCGGAAACT 7143 28 100.0 33 ............................ CCCAACCCCTGTGTAGGCACGCGGCAGATAAAG 7204 28 100.0 32 ............................ AGGCACGTAGCCGCCAGTCGAACGCGGCTGCT 7264 28 100.0 32 ............................ AGCGCGTACTCCTGCCCGCCCTTGAGCGGGAT 7324 28 100.0 32 ............................ TACAACTACGCGACCGCAGACGGCGTTACCAC 7384 28 96.4 32 ......C..................... GGCCGAGATCCACACCGCCCGCCTGCGCAAGG 7444 28 100.0 33 ............................ CTGCCAGCGGCCACGAGATTGCTCCGCACACGC 7505 28 100.0 32 ............................ AATTGCGCTTGGTCATATCCACAGCCCAGAAT 7565 28 100.0 32 ............................ ACCGCGCCGTGGGCTTGGCCGAGCGTCACGCC 7625 28 100.0 32 ............................ CGCACCCAGGCGCGATGCACCGCTGGGCAGGC 7685 28 100.0 32 ............................ ACCGACACCACCACCGCCGCAAGCCCGCAGCA 7745 28 100.0 32 ............................ TTCGACGAAGTCTGGCGGCCCCGCCTGGTGGC 7805 28 100.0 32 ............................ ACCTTGCCGATCTCGTTCGGCAGCGGCGTACC 7865 28 100.0 32 ............................ AGGCCCGAGACGCTGGTGTTGGAGGCATTTGC 7925 28 96.4 32 .............C.............. ATCGGCGCACTGGACCTGCTGGTCGGCGTCAG 7985 28 100.0 32 ............................ AAGCCCATCGGGTCCAGGCTGATCGGCTTGGG 8045 28 100.0 32 ............................ TCGCAGAGCTGCTCCTGAGCCGCTTCCCGCCC 8105 28 100.0 32 ............................ TGCCGGGCAAGGCGCTCTTGTTCCTGCAGCGT 8165 28 100.0 32 ............................ CTGCCGACCCGCTCAACGCTGACTGGCAGCAG 8225 28 100.0 32 ............................ TTCCGGTCCACATGCACTACCGCAGCTGCAAG 8285 28 100.0 32 ............................ GCGAGGCGCATCAAATCCCGGCTGACTTGGTA 8345 28 100.0 32 ............................ CGAAGGAAGCCTTCGGCCGCCAGGACAAGAAG 8405 28 100.0 32 ............................ GTGCTATCAGGTACGCAGACACCGTTATCCAT 8465 28 100.0 32 ............................ ATGAGGGCGAGGCCGCCCAGGATCGCCAGCAT 8525 28 100.0 32 ............................ TCCGTGTACGAGGCCAACAGAGCGACGACAGC 8585 28 100.0 32 ............................ GACATGCAGGAGACCACCGCGCCGGCGGCACT 8645 28 100.0 32 ............................ TGTCCCAACAGCCCAAGCCCGGCAGCGTGCGC 8705 28 100.0 32 ............................ TGTCCGAACAGAGCCGCGCCAAGGCCCTTGTC 8765 28 100.0 32 ............................ AGCAGGGCACGTGATCGGCTTGCACATGCCGC 8825 28 100.0 32 ............................ GTCACGCTGGCGATCGACTCGGTCACCATCTG 8885 28 96.4 32 ..................G......... AACGTGAGTGCCGGATCACGGCCGAAGTCCAC 8945 28 100.0 32 ............................ AGGTGGATTCGTGGCGACGAGCGGCGTCGATA 9005 28 100.0 32 ............................ ACCAGTCGCAGCGTGCCCACGGCCCGCATGGC 9065 28 100.0 32 ............................ GGGTGCTGGTCCTGGGGCTGTGGCCGATGTCG 9125 28 100.0 32 ............................ AGGCGTGTGGCCGCCTCGTTGACGCCCTTGAC 9185 28 100.0 32 ............................ ACGTAGATCACCCGTTATCGCAATATTGGTAG 9245 28 100.0 32 ............................ TACATCCACGTCGACATCGACAAAGCAAGCAA 9305 28 100.0 33 ............................ CATAGAGCAGGCCGCCCGCCGTGTGATGCCGGT 9366 28 100.0 33 ............................ ATACGGCGTACTGCGCAAATGCCGTACAGATTC 9427 28 100.0 32 ............................ GTTGAGGGATTCATAGAAGTTGGATGCGATCC 9487 28 100.0 32 ............................ GCGTACTCGGGCGTGCGTGGGAAAGCCTCGTT 9547 28 100.0 32 ............................ ACATACAGCAACTTTTTTGCGGCCAGCCGCAG 9607 28 100.0 32 ............................ GAGCCGTAGTGTCTGAATTTCTGGAGAGCGCC 9667 28 78.6 0 ....................TGTT..TT | ========== ====== ====== ====== ============================ ================================= ================== 69 28 99.5 32 GTTCACTGCCGGATAGGCAGCTCAGAAA # Left flank : CAAGTGCTGTACACCCAGCCCTGGTTGCAAGGCATGCAGGACCACGTCATGGCCTCCCCGCCACAGCCGGCGCCGGGAAACGCCCGCCACCGCATCGTCCGCCGGGTGCAATCGCACTCCAACGCCGATCGCATCCGCCGGCGGCAGATGCGCCGCAAGGGATGGACCTATGAAGAGGCATGCCAGCACATCCCGGACACGGTGGAGCGCCTGCTGCCTCTGCCACACGTTCATTTGCGCAGTAGCAGCACAGGCCAGAACTTTGCGCTGTTCATCGAGCACCTGGCGGTTCAGGATGCCCCGGTGGCCGGGCAATTTTCTACCTATGGATTGAGCCCGAGCGCCACGGTGCCCTGGTTCTGATTTCTTGACCCTTTTTTGGGTCAACAAAAAAAGTTCAATAAAAACAAGAAGTTGGAGATCCTGCATGCGAAAGGGGAAAGCTCACTGATCTCCAACATTTCCTTTTCTGCTCAAGGGGTTGCAGGTTTTCCTGTGTT # Right flank : TCCATGCAACCGCAACCCACCATTTCCATCTCGATCTGACCCACCCTGGTTCGTGAACTTCACGCTCACGTTGTGGATAAGTTCTTGGTCGCCTTCTCCTTCTTGGTGGTCTGTGGTGG # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGGATAGGCAGCTCAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGGATAGGCAGCTCAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [55.0-46.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 62-2171 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAELTO010000162.1 Xylophilus sp. ASV27 NODE_162_length_6753_cov_15.743737, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ===================================== ================== 62 32 100.0 35 ................................ GGCGAAGGCAATCCCGATCGCATGGCGCTGCACCG 129 32 100.0 34 ................................ AAGTCGGAGCCGGCGGGCGTGTTGGCGAATTGGG 195 32 100.0 35 ................................ TCGAACAGGTCTCCCACCTGTTGCCGATGCAGCGC 262 32 100.0 34 ................................ AGTCAACACAAGACCGAGGCGTTCAGCAGATACC 328 32 100.0 36 ................................ ATTTCGCGCACGCCGATGATGTTGATCACGCCCAGG 396 32 100.0 34 ................................ CTACTGGTACGGCAGCAGCAGCACGCAGACGCTG 462 32 100.0 36 ................................ CTGGACGAGATCACCGAGGATGACCGCGCGGGCAAG 530 32 100.0 36 ................................ TGCACCGAAGAGCTGAAACGGAACATGGCCGTGGGC 598 32 100.0 34 ................................ GTCCCATGTCGGCAAAAGGGACGGGTCCGCACCG 664 32 100.0 36 ................................ CGGCGCGATCACCGACCTGTGGGGCGGCAACCTGGT 732 32 100.0 35 ................................ CTTGAATGCCTTCGACAAGCCGCCAAACGTCACGG 799 32 100.0 37 ................................ TCGGGCGGCAAGCGCGACGCCCTCACCAACGGCCAGG 868 32 100.0 34 ................................ GACATCGACCAGCAGATCCTGCGTGCGCAAGGCA 934 32 100.0 36 ................................ TTGTCCGACTCCTCGGGCTCCTTGCGAACGGCCTTG 1002 32 100.0 34 ................................ CTCGCAGTGGGCGATGGTGGCGCCAAACGCGATG 1068 32 100.0 34 ................................ ACAGCCGCCAGCTCCGCCTGCAGGCGCTGGATGG 1134 32 100.0 35 ................................ TGGCCGCTCCAGGCGATGACGTTGTCGTCACGCCC 1201 32 100.0 35 ................................ TCGGCGAACTCAGGGTCTACCTTCTCGGCCGCGGC 1268 32 100.0 36 ................................ CCTTCGCGCTTCGTCGCGGGCTTGGCACAGCCGGCG 1336 32 100.0 35 ................................ GGCTGGGGCCGCCCTGAACGGACAAGCCCATGAGC 1403 32 100.0 34 ................................ AAGTGCCCGTTGCTCACCGGCAGCGCTATGCCGT 1469 32 100.0 36 ................................ ACCTGGTGCCCCTGCTCTTTGCGCCGCTCCGGGTCC 1537 32 100.0 34 ................................ ACGTTCGCGACGGCCGACCTGATCCTGCCGCCCA 1603 32 100.0 35 ................................ TCCACGTGATACCCCTCGGCGCGCAGCAATGCCGC 1670 32 100.0 34 ................................ GGTGACCAGGACGGTCTCGCTCGCGCCGAAGTAC 1736 32 100.0 36 ................................ CGGGCGATCGCGGCTCTGCGCATCGGGCAGCACCGA 1804 32 100.0 37 ................................ GTGAGCTTGGCCGCGGAGCGGCTGGAGACAGAGCCGG 1873 32 100.0 33 ................................ GAGCAACGCAAGGACGCGATGGTGCGCAACCTT 1938 32 100.0 35 ................................ TACGTCCGTACCGGAGGCCCACTATGACGATCACC 2005 32 100.0 34 ................................ CACAGACCAGGGATGTACTCGATGTGGCCCTGGT 2071 32 100.0 36 ................................ CTCGACACGGCCACGGGGCTCCCGATCACGCCGAAC 2139 32 90.6 0 ...............A....A...A....... | G [2166] ========== ====== ====== ====== ================================ ===================================== ================== 32 32 99.7 35 GTCGCGCCCTGCGTGGGCGCGTGGGTTGAAAC # Left flank : CCTGCGTGGGCGCGTGGGTTGAAACGATCACGGGCTTATCCTGGTGGCGCCAGATGACCTGG # Right flank : CAGCCGCGCCGTGCGCGGCGCAGCTGGCAAATTCTCACCCCGCCGTCGTTCTGCAGCGCTCGAAAGCATCCAGTTCGGCCCGATACGTGGGCGTCTGCACGTCCAACATGCCCAGTACGGAGTGGTACAGGTTGTCATGGGTGAGGGCGCGGCTGCGCTCGGCGGTGAGGCAGGTGCGGCTGGTGTGGCCGCGCTGGGCGAAGGCGTCTGCCATCCACAGCACCATGGGCACGTGCTTTTGCACCTCGGGGGCGAAGGCGTAGGGCACTCCGTGCAGGAACAGGCCGTACTCGCCAAGGGACTCGCCGTGGTCCGACAGGTACAGCATGCTGGTGGCGTAGTGCCCGCTTTGGGCCTGCAGCCAGTCGATGGTGCGGGCCAGAAAGTGGTCGGTCTCGGCGATGGAGTTGTCGTAGGCGTTGATCAGCGCGTCGTGGTTGCATTGGTCGAGCGCATGGGTGGTGCATTCGGGCAGGAAGCGCTTGGCGGCGGGGGATGAG # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCGCCCTGCGTGGGCGCGTGGGTTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGCGCCCCGCGTGGGCGCGTGGGTTGAAAC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-10.10,-6.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [36.7-28.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 4091-35 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAELTO010000067.1 Xylophilus sp. ASV27 NODE_67_length_26259_cov_19.510791, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ===================================== ================== 4090 32 100.0 34 ................................ GCTCTATCAGCTCCTCCGGCCGCATGCCCGTCAG 4024 32 100.0 36 ................................ GCGCAGCCGCTGGTGATCCGCCTGGTGGGCTCGCTG 3956 32 100.0 34 ................................ ATCCGCACTGCCAGCTGAAGGGAGTTGAGAAAAA 3890 32 100.0 35 ................................ ATTCTGACAATCGACGGCATCCAGGCCGCGCTCGT 3823 32 100.0 34 ................................ TTTCGCTGCCTGCGCGATCCCGCGCTCCGCGATC 3757 32 100.0 35 ................................ TTGATTTTGTCGAGTGCTTCGTCGCGCGTCATACA 3690 32 100.0 34 ................................ TCCACCAGCACCTGCTGGAAGCGCTCGGCCACGG 3624 32 100.0 34 ................................ CCCTCGACCTCGCCCCGGACGTTTTGGCCGCCCG 3558 32 100.0 37 ................................ TTTCTGAAGGCGCCCTCGAAGGTCGAGGTGCTGAACG 3489 32 100.0 36 ................................ GGCGTGGCCTATGACGGCGAGGTGAAGAACAACCGC 3421 32 100.0 36 ................................ TGCACGATGGCATTGGTGGCGGTGCTGGCGGTCTCG 3353 32 100.0 34 ................................ TGACGTATCCAAGGATGGTCCGGCCGAGTAACCC 3287 32 100.0 35 ................................ CGCGCCCCTGCGCGTTGACCGTCGCTTCTGTTCTC 3220 32 100.0 37 ................................ ATGACCAGGGCGCGGGCGATGAATGCAAAGGCTCTGC 3151 32 100.0 37 ................................ ACCCATGAAGTGTGGCTCGGCCTTTGCCCGGTCCGGG 3082 32 100.0 34 ................................ GCCTGCCGTGTACGACTCGCCGCGTTGCAAGTCC 3016 32 100.0 34 ................................ TCGGCAGCCTTGGTCTTGCCGATCATCACCTCCC 2950 32 100.0 36 ................................ CCACAGACAAGGCAGGCAACGCGCTCGACGCGCTGC 2882 32 100.0 37 ................................ GTGCCGGCTTGAGACCATCCCCTACCGCTACCCTAAG 2813 32 100.0 35 ................................ TAGTACGGCCTGCGCCATCCATTGGCGTGGGTCTT 2746 32 100.0 34 ................................ GGCACTGCCTCCCATGGCCATCTATATGCACTCC 2680 32 100.0 35 ................................ TTTCGATGCATGGTCAGGACTTGCAATCCACGGAG 2613 32 100.0 34 ................................ ATGTCCTGCACCCACTGCTCAGCCCATTTGTACG 2547 32 100.0 36 ................................ CTTGGCTATCGCGCATGCGATGGCGTCGCCGTCACA 2479 32 100.0 35 ................................ GCAGCACTGGTGATGCAGCCGACGATGGTCGGCAC 2412 32 100.0 35 ................................ TGGGCGATGGTCAAGAGACGATTACGAGCATTCGC 2345 32 100.0 35 ................................ TACGGCTGCTGAGGCGTGCGCAAATGCTGGCATAG 2278 32 100.0 35 ................................ CTTTGCCGACGTTGGCAGTGCTTGGGATGTGTTGG 2211 32 100.0 35 ................................ TAAACGGATTGCGCGCAGTGCCTTCCACCAGGTCG 2144 32 100.0 34 ................................ GCTCGACGGCACCTGGCACCGGCCGTTCACCACG 2078 32 100.0 35 ................................ ACGCGAATACAGCACAGAAAGCGTCCTCCACCTTG 2011 32 100.0 35 ................................ ACTATGATCGATGAACTCATGGCGTCGCCGACCGA 1944 32 100.0 34 ................................ ACATCCGGGCTCCCATGGCGCGCGCCGCGCCAAT 1878 32 100.0 35 ................................ AGGCGCATCTGGCGCAGTGCCAGTTCGATGGACAA 1811 32 100.0 35 ................................ TTGGCCAAGCACCTGAACATCCAGATCGGGATGAG 1744 32 96.9 34 ...............T................ CCCGCCTGCGTCGCTCCACCGCCGCACAAGTTCG 1678 32 100.0 36 ................................ TTCCGCAGGTAAGCCTCCAGTCTCGCCGGGTCTGCG 1610 32 100.0 36 ................................ TCCACCAGGTAGTAGATCGGCACCAGGTCGCCGGTC 1542 32 100.0 36 ................................ GGGATCAGGAGCGGGCGGCTCACCTGGTACCGGGGT 1474 32 100.0 37 ................................ TGGTTGAAGATGGGCTTGGGGTCGCTGGGGAGCGCCG 1405 32 100.0 33 ................................ CGCCTGCTCGCCTCCCTGCTGGTGCTGGTGGTA 1340 32 100.0 35 ................................ CGCCCGGACGCCGGCGGCTGCTACATCGTGGGCAC 1273 32 100.0 34 ................................ GCGGCCGTCGAGCAGGCGGCCTGCGGCTTTTTTG 1207 32 100.0 35 ................................ CGGCAGTCCTGGGCCAAGGCCCGGCACTGCATCGT 1140 32 100.0 37 ................................ TTCGTACACCGTGCAGGCGCGGTAGGTGAGCATTGCC 1071 32 100.0 35 ................................ CAGCGCCCCGGCACCGCTACACCGCCCATCAACCG 1004 32 100.0 37 ................................ TCGACCAGGTAGTAGATCGGCACCAGGTCGCCGGTCT 935 32 100.0 35 ................................ CCGATCTTCATCGTCATGCGCTTCGCGCCATCCCA 868 32 100.0 34 ................................ GCGGTAAGGCATTGGGCGCTCCAGCGCCACGCGT 802 32 100.0 33 ................................ TTCCCCGTGCCCTGCGGGCCGTGGAAAATCAGC 737 32 100.0 36 ................................ TACCTTGCGGTAATGGGCTCAGACAATTCCGCGCTG 669 32 100.0 34 ................................ GGCCATGTCGAGCGCACCACGGCAAAGAGCGCTG 603 32 100.0 34 ................................ AAGGCCAGCCGCCTGGAGTGCGATGCCAACTTCA 537 32 100.0 36 ................................ GACCGCTCCGACAAATCGCTATCCGCAGCCCCGGTC 469 32 100.0 36 ................................ GTGCGCGCCGAAGGCTTTGGACGGCCCCGCCAGGCG 401 32 100.0 35 ................................ GGCAACGTCGACACCGACGCCGCCGGGCAGGCCTC 334 32 100.0 36 ................................ ACGCGCGCGTGGGCCGTCGACGGCACGCTGCGTTTT 266 32 100.0 34 ................................ CTGGTCGATCCGGCGACACGCCAGCCGGTGCCGG 200 32 100.0 34 ................................ GCACTGGCTTTTTCTGGCTCGGGCGGATATCCGA 134 32 100.0 36 ................................ GATCACGGGCTTATCCTGGTGGCGCCAGATGACCTG 66 32 100.0 0 ................................ | ========== ====== ====== ====== ================================ ===================================== ================== 61 32 99.9 35 GTCGCGCCCTGCGTGGGCGCGTGGGTTGAAAC # Left flank : TGCGTCGCGTTGCCCGGGCGTGCCAGGACTTCGGGCAGCGCGTGCAGTTCTCGGTCTTCGAGATCGAGGTCGATACGGCCCAATGGACCCTGCTCAAGAACCGGCTATGCCGCGAGATCGACCCGCTGTGCGACAGCTTGCGGTTCTACTACCTGGGCAAGAACTGGCAGGCCAAGGTGGAGCACGTCGGCGCCAAGGCGGCCGTTGATCTGAATGCGCCGCTGATCCTGTAGCACCAGTCGCAATCCACGCCGGAACCTTACCCAGGCGAGGGCTGCTCCGCCCCCACGGATGCCGCAAACCTCAATGCGAGGTTTCACCACTTGCGAACCTGAAGTGTCTGGGCGGTTCCTTTGGGGTTCGCGGCTTTCCAGGCTATTGATTCATATTGATTTTTTCCAAGAGCAAGGCATCTGAGGCATTGGAAGTCGCAGCCATGGGTGGGGCTTCGCAGAGAGCTGGGAAAAAGGGCTTGTGTGGGATTGACTTATAACCACCGA # Right flank : CGGCGAAGGCAATCCCGATCGCATGGCGCTGCACC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCGCCCTGCGTGGGCGCGTGGGTTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,3] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCGCCCCGCGTGGGCGCGTGGGTTGAAAC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-6.90,-10.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [18.3-46.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.14 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //