Array 1 934-356 **** Predicted by CRISPRDetect 2.4 *** >NZ_NMBE01000215.1 Escherichia coli strain MOD1-EC6198 MOD1-EC6198_215_length_970_cov_8.52313, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 933 29 100.0 32 ............................. AGTTGGGGCGGCGCAATAACGAGACGATACGC 872 29 100.0 32 ............................. TCCACGCTGTAACGGCCATCATTAAGTTTAGT 811 29 100.0 32 ............................. GCTGATGGTCTGGGAGTGTCCATCGGGCAACT 750 29 100.0 32 ............................. GAAGTAGGCCTGACAGTGATTGAACGCATACT 689 29 100.0 32 ............................. AGTTGGGGCGGCGCAATAACGAGACGATACGC 628 29 100.0 32 ............................. GGGAGTGGCACTTCTGGGGTAGCGGCGGCCCT 567 29 100.0 32 ............................. TCAACGCGCTCAGACGTTGCGTGAGTGAACCA 506 29 100.0 32 ............................. AAATATCCAGGGCTGGGCTGGAGGCAGACGGC 445 29 100.0 32 ............................. CCCGGAATGCATTCTGAAGGTTTGCTGTATAT 384 29 96.6 0 ............................A | ========== ====== ====== ====== ============================= ================================ ================== 10 29 99.7 32 GAGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : AACCGGAAGTAGGCCTGACAGTGATTGAACGCATAC # Right flank : ACCATATAACCCGTTATCTCTTTCTCAAGTTTTTATATTAGCTGTACTTGTAATAAGCAACATATCCACGTAACACCTCATGTTCAAAATAGTTCCCCATGCCAGATAAGTTCACAATTATCGATACAAAAAATCAAATTTAATCAAAGTTTTATTTGTATAATCCTTAAACCGTTAAGAAATTTTAATATATTATTTTTTTAATATTAATTAATGCCTGTTAATTTTTTCTTTAGAATAACAGTGTATTTTTTAAGCTTGTTATTCATTGATTAAGTAATAAATCTGGAATTTTTTTTTTGTTTTGAGGCTAGTGGTTGTTTTAACAAAACCGCCTCTATACGCTGTTGATGAAT # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GAGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,6] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GAGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [68.3-31.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 96431-95548 **** Predicted by CRISPRDetect 2.4 *** >NZ_NMBE01000009.1 Escherichia coli strain MOD1-EC6198 MOD1-EC6198_9_length_105112_cov_18.6387, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 96430 29 100.0 32 ............................. TTGCCCGCGCAATTCCGGGAGCATCCGCAATT 96369 29 100.0 32 ............................. ACGGACAAAATATATATTGATTTGCGAATTAT 96308 29 100.0 32 ............................. GTAAAGAAACTGCCGACAAATCCCTGTTCGTT 96247 29 100.0 32 ............................. CCCGTCACCGACGCGCAGTGGCGCTACCGTGA 96186 29 100.0 32 ............................. CCTACGAACAATTCCTCTGAACCGCCCGCACT 96125 29 100.0 32 ............................. GGATCTAACGCGCTGTAAAAATTCCGTGCTTT 96064 29 100.0 32 ............................. CTAACGCCACATTGGCGGAATTGGCTGCTGAT 96003 29 96.6 32 ............................A TGCGGATTACCGGCAAAACATGGGAGCAAACC 95942 29 100.0 32 ............................. CCGAACGGCTGGCGAAGCAGGTGGCTGGCGTA 95881 29 100.0 32 ............................. GTTTACCGCCCCGCAGAGGCGCTGGCAGATCC 95820 29 100.0 32 ............................. GGATGACCTGTCGCTAAAACTCGCCGCGTACA 95759 29 100.0 32 ............................. TCCGTTTGGTCCACCAAATGTTTGATGCTTCA 95698 29 100.0 32 ............................. TTCAGGGTGTGATTCCGCATACCAAGCAGTAA 95637 29 96.6 32 .A........................... GGCGCACTGGATGCGATGATGGATATCACTTA 95576 28 72.4 0 .AA........C..T....T-.G.....C | C [95551] ========== ====== ====== ====== ============================= ================================ ================== 15 29 97.7 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTCCTTGCTGCAGGTGAAATTGAACCACCACAACCCGCGCCGGATATGTTACCGCCTGCCATCCCTGAACCTGAAACGCTGGGTGATAGTGGTCACCGGGGGCGCGGCGGATGAGCATGGTCGTGGTTGTTACAGAAAATGTCCCTCCGCGCTTACGTGGACGGCTCGCAATCTGGCTACTGGAAGTGCGTGCCGGTGTGTATGTTGGTGATACATCAAAACGTATTCGGGAGATGATCTGGCAGCAAATTACCCAACTGGCTGGTTGCGGAAATGTGGTGATGGCCTGGGCGACCAATACCGAGTCGGGTTTTGAATTTCAGACCTGGGGAGAAAACAGACGTATTCCGGTGGATTTGGATGGGTTACGTTTGGTTTCTTTTCTTCCTGTTGATAATCAATAAGTTAGACGTTCTTTAAAAATAAGGAAATGTTTTAATTTAGTTGGTAGATTGTTGATGCGGAATAAATTTGTTTAAAAACAGTTATGTATGCTTAGT # Right flank : AGCTCCCATTTTCAAACCCATCAAGACGCCTTCGCCAACTCCTTCACCAGAGGTAGCATTATCCGCATAACGTCACGGCAGCGACGTTCTATTCTTCCAGGAAGTGCCTTATCAATATGCTGTTGATTATCCAGTCTTACGTCATGCCAGCTATTTCCCGCAGGGAATGCGGCTGTTTTTGCGCGTTGCTGATAACCATCCTTATTCCCAAGATTCCAGTTAGTCGCTTCCACCGAAAGTACAGCAATGCCCGCTTTGTCGAATATTTCTGCGTCATTACAACACCCAGTGCCTTTCGGATAATTTTTATTCAAACCCGGATTGGTCGTTGCGGCTATTCCGTGACTGCGTGCAATTGCCAGCGCCCTGTCGCGCGTTAATTTCCTTACTGCTTCAGGGGTTTTTACACCGCTGTTGAAATACAATTTATCGCCAACAATTAAGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTTTCGGTGTCACTCATCCGCTT # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [43.3-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //