Array 1 40434-39551 **** Predicted by CRISPRDetect 2.4 *** >NZ_NMED01000033.1 Escherichia coli strain MOD1-EC6040 MOD1-EC6040_33_length_55728_cov_32.3141, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 40433 29 100.0 32 ............................. AATTTCTGGAAAAAAACAAATTCAAAAAATTG 40372 29 100.0 32 ............................. TGACTGCGGTTCAAAATCTCCGGCACACGTCC 40311 29 100.0 32 ............................. GCCGCGCCGCACTGGCGCTGGCACGGTATGCA 40250 29 100.0 32 ............................. CCCTCACGGGCTATTTGGTTAATCGAAAATTA 40189 29 100.0 32 ............................. CCAGCCCTTGTTAACGTCTTCGCCGTTCGGGT 40128 29 100.0 32 ............................. GCCGTCATTGCCCGTTGAGATACCGCCCGGAT 40067 29 96.6 32 ........T.................... GATACCGCGATTCATGCGACGATAAAAAATAC 40006 29 100.0 32 ............................. ACGAGGTACAGTGGTGCAAAAACAAATTATAG 39945 29 100.0 32 ............................. CACCACATGAACCGCGACGCAGCGATTCACCG 39884 29 100.0 32 ............................. GTTATTTTTTCACTAATTTCGGTTAGAGGGAT 39823 29 100.0 32 ............................. GGGATGAAATTGAACTTCCAGGCGACCGACAA 39762 29 100.0 32 ............................. ATTGATAACTCGCGCTCATCCATTTTGAATTA 39701 29 100.0 32 ............................. GCATATTTCATGCAGCGTTCTGAATGAGTAAG 39640 29 100.0 32 ............................. GCGTGGCGCGGGGCGTATTCCCCGGCGAGTAA 39579 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 15 29 99.8 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTCCTTGCCGCAGGTGAAATTGAACCGCCACAACCTGCGCCGGATATGTTACCGCCAGCCATCCCCGAACCTGAAACGTTGGGCGATAGCGGTCATCGAGGACGCGGCTGATGAGCATGGTCGTGGTTGTTACAGAAAATGTCCCGCCGCGCTTACGTGGACGGCTCGCAATCTGGCTACTGGAAGTGCGTGCCGGTGTGTATGTTGGTGATACATCAAAACGTATTCGGGAGATGATCTGGCAGCAAATTACCCAACTGGCTGGTTGCGGAAATGTGGTGATGGCCTGGGCGACCAATACCGAGTCGGGTTTTGAATTTCAGACCTGGGGAGAAAACAGACGTATTCCGGTGGATTTGGATGGGTTACGTTTGGTTTCTTTTCTTCCTGTTGATAATCAATAAGTTATCCGTTCTTTAAAAATAAGGAAATGTTTTAATTTAGTTGGTAGATTGTTGATGCGGAATAAATTTGTTTAAAAACAGTTATGTATGCTTAGT # Right flank : GGCGCACTGGATGCGATGATGGATATCACTTAGAATTCCCCGCCCCTGCGGTAGAACTCCCAGCTCCCATTTTCAAACCCATCAAGACGCCTTCGCCAGCTCCTTCACCAGCGGTAGCATTATCCGCATAACATCACGGCAGCGACGTTCTATTCTTCCAGGAAGTGCCTTATCAATATGTTGTTGATTATCCAGTCTTACGTCATGCCAGCTATTTCCCGCCGGGAAGGCAGGTGTTTTTGCGCGTTGCTGATAACCATCCTTATTCCCAAGATTCCAGTTAGTCGCTTCCACCGAAAGTACAGCAATGCCCGCTTTGTCGAATATTTCTGCGTCATTACAACACCCAGTGCCTTTCGGATAATTTTTATTCAAACCCGGATTGGTCGTTGCGGCTATTCCGTGACTGCGCGCAATTGCCAGCGCCCTGTCGCGCGTTAATTTCCTTACTGCTTCAGGGGTTTTTACACCGCTGTTGAAATACAATTTATCGCCAACAA # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [43.3-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.51 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 205900-206843 **** Predicted by CRISPRDetect 2.4 *** >NZ_NMED01000002.1 Escherichia coli strain MOD1-EC6040 MOD1-EC6040_2_length_206967_cov_30.2543, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 205900 29 100.0 32 ............................. CGGCTTGTTTAATTGCGTGGAACGTCTCAATT 205961 29 100.0 32 ............................. ATACAAACGCGGTGTTTATCAATATGAATTTT 206022 29 100.0 32 ............................. GCGTCGCTGGAAGAACAAAACCGCCTGATCGA 206083 29 100.0 32 ............................. GCACCACGCGTACCCCGATGTTTGTTTTGCCA 206144 29 100.0 32 ............................. ATCCGGCTATATCTTTGAGCATTACAGAAATA 206205 29 100.0 32 ............................. GGGGTAGAATTATTCTTCGTGAGCGATTTATC 206266 29 100.0 32 ............................. CGGCGTTCCGTGCGGCAATTGGAATCACACCA 206327 29 100.0 32 ............................. CGTTCTGAATCCGATATTCTTCAGCACCTTCA 206388 29 100.0 32 ............................. AGCGTCAATCAGCGCGTCTATCGCGTCACTTT 206449 29 100.0 32 ............................. ATTTGGGGGTATGAGAGCGCCGAGCCGTTCGG 206510 29 100.0 32 ............................. GCTCCCTGTCAGTTGTAATCGATAACGTTGAT 206571 29 100.0 32 ............................. CCGAGCCCGATTATCGGCATGAGCGATGCGGA 206632 29 100.0 32 ............................. TCGAAGAAGAAAGGGAAATAATGCGAGGAACG 206693 29 100.0 32 ............................. TATTACGCGCCAGCAATGCTGACAGCGGCAAA 206754 29 100.0 32 ............................. CGCGAGAGCCAGCAAAACGCCAGGGCACAAAA 206815 29 93.1 0 .A..........................A | ========== ====== ====== ====== ============================= ================================ ================== 16 29 99.6 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TGGATGAACTATTGGCAACGCTGACCGATGATAAACCGCGAGTCATTGCACTGCAGCCGATTAGCCAAAAGGATGATGCCACACGTTTGTGCATTGAAACCTGCATTGCGCGTAATTGGCGTTTGTCGATGCAAACACATAAATATCTAAATATTGCCTGATTAAACATTTATAAGCGTTATAAATGGGTGGAACCTGTAAAGACTTCTACTCATTTATATTGTTTGTCGCCTCTGAAAACTCCTCCATTTTACCCATCCAGGGCTAATCATTAGCATTCTCTACAAATTCTGTGGCATTAATTTTTCGCTGGAGTGAAAATTATTGCGGTAAAGTTTGGTAGATTTTAGTTTGTATAGAGTTATTTTAAATATTTACCTTTTTAATCAATGGATTAAGTACTCTTTAACATAATGGATGTGTTGTTTGTGTGATACTATAAAGTTGGTAGATTGTGACTGGCTTAAAAAATCATTAATTAATAATAGGTTATGTTTAGA # Right flank : CCATATAACCCGTTATCTCTTTCTCAAGTTTTTATATTAGCAGTACTTGTAATAAGCAACATATCCACGTAACCCCTCATGTTCAAAATAGTTCTCCATGCCAGAGAAGTTCACAATTATCGAT # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [75.0-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //