Array 1 9358-11278 **** Predicted by CRISPRDetect 2.4 *** >NZ_BCPC01000021.1 Salmonella enterica strain NGUA-30_S6, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 9358 29 100.0 32 ............................. TTTTTTATAAATCTGGCGAACCTGCACCCCCT 9419 29 100.0 32 ............................. CTCTCAGCCCCTCCGGGGCGCCCCGTGATAAT 9480 29 100.0 32 ............................. CATCCCCCCTCTTTTCCCCGGGTGTTTGTTGG 9541 29 100.0 32 ............................. ACGGTAGGAATATTCACGTTTTTTAAATCGGA 9602 29 100.0 32 ............................. ACGTGACCGCCGAAATGATTGCGGAAATCGCC 9663 29 100.0 32 ............................. CGCGCCCACCGTTCAGCCCTGGAAAAAGCGGC 9724 29 100.0 32 ............................. CCGCCTTCACCCAGCCCGCCGGACATCTGATC 9785 29 100.0 32 ............................. AGGGCTGGCTGACGCGCACCGAGCGCCGCAAC 9846 29 100.0 32 ............................. AAATTTATGAGGAAAATTATGTCAGACAGTAA 9907 29 100.0 32 ............................. AGGAGTTGTTAGGCCAACTGTATAACGATTTA 9968 29 100.0 32 ............................. AGATGACCATCCCACCAAGCAGGCGAAGAAAA 10029 29 100.0 32 ............................. GTGCCGCTGATTTTCGTAACGCCTCAATGTAT 10090 29 100.0 32 ............................. AAAAAACAATGGTTTTACCGTCCGGCTGAACA 10151 29 100.0 32 ............................. CCGATGATCCAGAAAGTCACAAATGCGAGGAG 10212 29 100.0 32 ............................. AGGGGTTCAGGGGCGAGCGGGCGTTAAAGCGC 10273 29 100.0 32 ............................. CAGACCAGGGAGTTTCTGGCCGAACTGGAGAG 10334 29 100.0 32 ............................. ATGTGCGCATTATTGCTAACCATAGAGACTCA 10395 29 100.0 32 ............................. GGCGACGGCACAAAACGCTCAAAACTCATAAC 10456 29 100.0 32 ............................. TGTTGGCTGGTAACCACCGCAGATCGTCACCT 10517 29 100.0 32 ............................. ACCAGGGGGTTTTTTCCACGTATCGCCGCTGC 10578 29 100.0 32 ............................. AACAGTGGTTTTAGGTTGTCGGTGCTGATCCC 10639 29 100.0 32 ............................. CCCTTTATCTTAGCCGCCAGAACCAGAACGCC 10700 29 100.0 32 ............................. GCCCCGATAGCGTCAACTACCAGGGCCTGCAA 10761 29 100.0 32 ............................. AATTCTTTTGCTTGCGCGTCGTTCATATCGAA 10822 29 100.0 32 ............................. GACAATCAGGGGGCGCTGGTTGACAGTATTAA 10883 29 100.0 32 ............................. TTAGTCAGGACGACTTTTACGGCTATGTAGGC 10944 29 100.0 32 ............................. CCGTAATGCTTTTATGTCCTCGCTTCGCTGCG 11005 29 96.6 32 ...................A......... GAGGTAAAACTAACTGGCCGCGTTGTCCGTCA 11066 29 100.0 32 ............................. TACGCCAGAGGAATGGCTTTCAGTGTTTTGGT 11127 29 100.0 32 ............................. ATATTTTGGCAACTCGTCGTACATTATCGCCA 11188 29 100.0 32 ............................. TGATATTTTTGGTTATTTGCGATTTAGTTTTT 11249 29 100.0 0 ............................. | A [11276] ========== ====== ====== ====== ============================= ================================ ================== 32 29 99.9 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : CTTATTGAAGATGTTCTCGCGGCAGGGGAAATTCAACCGCCGTTACCTCCTGAAGATTCACAACCCATAGCGATCCCTCTTCCTGTTGCGTTGGGAGATTCCGGTCATCGGAGTACCTAACGATGAGTATGCTGGTTGTCGTTACCGAAAATGTTCCTCCTCGTCTGCGGGGGAGGCTGGCCGTCTGGTTACTGGAAATTCGAGCTGGTGTGTATGTTGGTGATGTTTCCGCAAAGATCCGCGAGATGATATGGCAACAGGTTTCCGTTCTGGCAGATGAGGGAAATGTTGTTATGGCGTGGGCGACAAATACAGAATCAGGTTTTGAGTTTCAGACTTTTGGTGTAAATCGACGTATTCCGGTAGATCTTGATGGACTGCGATTGGTGTCGTTTCTACCTGTTGAAAATCAATAAGTTATAGATCTTTAAAAATTAGGAAAAGTTGGTGGGTTTTTTGTGCGCTAAAAAAGTATTTAAATTCAATTGGGTAGATTTAGA # Right flank : GTTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCTCAGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCAGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [70.0-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 451522-453624 **** Predicted by CRISPRDetect 2.4 *** >NZ_BCPC01000046.1 Salmonella enterica strain NGUA-30_S6, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 451522 29 100.0 32 ............................. AGAAAGATGCGTACGTTCAATGTCGAGCTTTT 451583 29 100.0 32 ............................. ACTGGCTAATCACGGTTAACGCCGTGCCGGTG 451644 29 100.0 32 ............................. CGGCCGGACTGATTTAACGAGGGGAATTTATG 451705 29 100.0 33 ............................. TTTTATCGTCGTAGCCTATTGCTAACTTGACGC 451767 29 100.0 32 ............................. CCGCTGACGCACTGGATCAACCTGACGCAACG 451828 29 100.0 32 ............................. TAATCTTTCAGCGCGTCCTGGCGGTCAACGAG 451889 29 100.0 32 ............................. TTGAGTGCCACGGCCAGAGCGGTAGCCATTAA 451950 29 100.0 32 ............................. AAAACGGGTTTGCGGAAGGCTGGAACGCCTGC 452011 29 100.0 32 ............................. GAGCGGATCCGGGATCGTCAGCACTCTGAACC 452072 29 100.0 32 ............................. CACGATTTTATGTGCCGCGTCGAGGCGTGGGC 452133 29 100.0 32 ............................. GCGACCAAACCATTCGGATTCCGTAGGGGACC 452194 29 100.0 32 ............................. ATTTCTTGCCTATAATTTCCGGTTCGACGCCA 452255 29 100.0 32 ............................. CACAGATCGCGAGTTTGCTGGGTATATCTGAA 452316 29 100.0 32 ............................. GGGAATGGCTGGATCTGGTGTTGGTTATTTGC 452377 29 100.0 32 ............................. CCGCCGCTGTTCTTCTGTGTCTGCTTTTGTCC 452438 29 96.6 32 ...C......................... GCAGTAATCCCGGGTATTCCGAGTTATATGAA 452499 29 100.0 32 ............................. GCGTCAACCAGTTCTGGCATACCCTCCTCTTC 452560 29 100.0 32 ............................. ATTAGCTGATAAATCATCCAACATGTCACTTA 452621 29 100.0 32 ............................. AGTCGCTGGCGGATGTGCGGCGCACCGAAGCC 452682 29 96.6 32 ..G.......................... CACATAACCCGGCGCGATGGCCGATACATCAT 452743 29 96.6 32 ..G.......................... CGAGAGATCATAGACCAATGGACTGAAAGACT 452804 29 96.6 32 ..G.......................... TTGCGCTGTTCTATTGGCGGCAATTCTCTGAA 452865 29 96.6 32 ..G.......................... AGTACGAGGCACTATTCGGCAAGAAACCGCAC 452926 29 96.6 32 ..G.......................... GGGGCATGTGCGAAATTTCGCTCCAGTTTGTT 452987 29 93.1 32 ..G.....................C.... GCTCAAAACTCGGATGGTATAGGCGTGGCGCA 453048 29 96.6 32 ..G.......................... GCAAGCCACAGCGCAAAAGAGGTCTATTCCTG 453109 29 96.6 32 ..G.......................... GCGCTTCCGCCAACTCTCATCCGTGAAACGGT 453170 29 96.6 32 ..G.......................... CGCCATAAACGCGACTCCGTCACACATCCGTA 453231 29 96.6 32 ..G.......................... ACGCGTTAAAACTGCGCTCAATGCAGACGGCC 453292 29 93.1 32 ..G........A................. CGGTTCGCCCGCTGCTCAGTCTCGCCGGAATG 453353 29 96.6 32 ..G.......................... GGGCATGAGTGCTACTGCTTTCAACCCGAAAG 453414 29 96.6 32 ..G.......................... ATAAATTATCGGGAAATCATAATCAGCGCCGC 453475 29 96.6 32 ..G.......................... AAAACCCTCAAATATGCGTAACGGGAGGCTGG 453536 29 96.6 32 ..G.......................... TGCGCCAACGACTGGAATTTTTGCGTGTAGCC 453597 28 79.3 0 ..G............A.AA....-.G... | ========== ====== ====== ====== ============================= ================================= ================== 35 29 97.7 32 GTATTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACTTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGATAAAAAGTAGTTTATAAACAATGACATACGTTTAGT # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGAGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAGCAGTCGAATCATCTGCCATCCCGATATTGCACGTGAACGTTATGCAGCAATGACTTTTCTTGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTATCGAATGATGTACACGCGTGACCCCCTGCCGATTGG # Questionable array : NO Score: 5.93 # Score Detail : 1:0, 2:3, 3:0, 4:0.89, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.78, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTATTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTATTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-10] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //