Array 1 19293-20220 **** Predicted by CRISPRDetect 2.4 *** >NZ_RWMQ01000040.1 Pseudomonas aeruginosa strain 1042828174-20 IPC1502_40.1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 19293 28 100.0 32 ............................ TATCGCCATGGTTACGTCACTCATCGCTGACT 19353 28 100.0 32 ............................ CGGCGCTCCGTTCGACGCGACAAGTCGCGACG 19413 28 100.0 32 ............................ AACTGGTCGTGGCGCGGGATCACCGACCGACG 19473 28 100.0 32 ............................ ATAGGATGACTTCTGCGGTTGTGAAGTTTTTC 19533 28 100.0 32 ............................ TTGTCTGTCACCGAGTCGACCACACCAGAAGA 19593 28 100.0 32 ............................ TATACCCGACTTTTCAGCCCCGCCACCCTCGC 19653 28 100.0 32 ............................ AGGGGGTCAGAGGGCAGGGGGAGAAAAGCTTC 19713 28 100.0 32 ............................ CCAGGCGCCGGCTTCTTCCCAGGTGATGCCGG 19773 28 100.0 32 ............................ AGGATCGCGGCGGAATGATGTCTCGCGCCGAC 19833 28 100.0 32 ............................ ATTGGCTGTTGAAGCTCAGGATCGATAGTCAC 19893 28 100.0 32 ............................ TTGCTGTGCTTGAAGAAAAGGGGTTCGTCCAA 19953 28 100.0 32 ............................ GACCCCGCCTCCAGGCCGGAGCCACCTGCCTG 20013 28 100.0 32 ............................ TCGCCGCCCTCCATGGTCTGGCTCAGTTGGCC 20073 28 100.0 32 ............................ AGCAGTTCGAATTCGTCATCCAGTTCTAAGGT 20133 28 96.4 32 ........................A... TGTCCCGAAGTTCATAAGCGGGCTTCGGGCGA 20193 28 75.0 0 T.........AC.....TC.TC...... | ========== ====== ====== ====== ============================ ================================ ================== 16 28 98.2 32 GTTCACTGCCGTATAGGCAGCTAAGAAA # Left flank : CGAAGTCGTCGAGGACGAACCAGGCCTGGTCGTCGATCAGCAGCGCGCGCAGCAATCGCTGCTGTCGGAAGAAGTAGTGCGGGGCAAGCTGGGTATGGCCGTGCATAGGAGAAATCCTTCTCTGAGCTGTCCGCTGCCTGGCTTCTGCCGGCGCGGCAGGGAGACAGGCCGCTCGTGGGTGTTGGGCCAGCAGGCTGTGGCCTGCCGGGAACCGAAGTCGCCGGCGAAAAAAGCCTACTGACAGCGCCTGTAGGACGGCAATGGCTAAGCCTTGTACGAAGTCTCCGATGGCACAAGCCCGCTGAACAGCTAGGCCGTTCTGAACATTACGCCGGCATGGAGAAAACAGGGGATGGACGCTATGCTTGGGAACCCTTTTTTTGGTGGTTTTTTAAAGCCCTTTTAGATCAAAGGGTTAGAGATCGCTGCAAAAAGAGGGTTTTTCCGGGCTTTGGCGCTGGAGCCCTTGGAGCTTGGAAGGTTGATGGTTTTTGGGTCTA # Right flank : ACGGCCAGCAGCCCTGAAGTATCGATTGATGCGGTTCGCTGTCGGCCGGGGGGCACCAGTCGAAACGAAGTCCCTTTCCATGGGACCTCGTTGCGGACATGCCGATGAGGCGCTGACGGGGTTCTTCAGAACCAGGGAACGGAACCTCCTTTGCTCAACCCGTAACAGGTGAATCCTCCTTCCTCTGCCGTCGCCTGCAACGGCCCGTGGCGGATGAAGAGACGGAAGTGCTGTCCGGTGCTCTGGCTGCGTAGCGTGACGAAGGGCAGGTCCAAGGCTCTCGCGACCGTATCGGGAATGCGTTTCCGAGCCTCCTCCTCACTCAGATCGTGCCGGCGCATGAGCCGCCGCCGCAGACGTTCCGGATTGCTTTTCGCCTGAACCCGACTGACCTGACGGTACGGTGTGGGGTGAGGCACGACTGCCGGTTCTCCGAATTGCAGATGGTCCCGCAACCCTTCCAGCCAGGGCCGGGCGAGCAGGGCACGAAGGTCGTCCGC # Questionable array : NO Score: 6.17 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTATAGGCAGCTAAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: F [matched GTTCACTGCCGTATAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [46.7-33.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 30094-28745 **** Predicted by CRISPRDetect 2.4 *** >NZ_RWMQ01000040.1 Pseudomonas aeruginosa strain 1042828174-20 IPC1502_40.1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 30093 28 100.0 32 ............................ TGGCGAACGATGGCGCACTGGATTGCGTCGCC 30033 28 100.0 32 ............................ AGCCCGAGCTGAGCGATATCCCCTGTCACGAC 29973 28 100.0 33 ............................ ATAGCGGAAGTAGATCGCGTCCGCGGGTTCAAA 29912 28 100.0 32 ............................ AATTATCAGACTGCTGCGAACAACGTGAACAA 29852 28 100.0 32 ............................ GCCTACAACCTGCCGCAGATACAAGCGCAGAT 29792 28 100.0 32 ............................ CGCAGCGCAGGGCATTGATCAGTGCCGCCCGG 29732 28 100.0 32 ............................ TTCGCAAGAGGGGCATCGAGGAAGTCAACACG 29672 28 100.0 32 ............................ TTGTCGCTTCCAATTAGGCCGGCGCGCTTCTT 29612 28 100.0 32 ............................ GTCAGACGGGACAGATCAGCATCCGGCTCCTG 29552 28 100.0 32 ............................ TGCCGGCGGGAAGGTTGCCGGCTTCCCTGGCA 29492 28 100.0 32 ............................ TGATCGAGTCCAGCGAGCCGCTCGACTGGTCA 29432 28 100.0 32 ............................ TGGACACCATCGATCCAGGCCAGCCACGTGCC 29372 28 100.0 32 ............................ TATTACGACATCCAGTGGCGAGACATGGCCAT 29312 28 100.0 32 ............................ GCGGAATCATCTCGCCGGCCGTCTTCGTGCTC 29252 28 100.0 32 ............................ CCGGACGCCCCTAATCTGGAGGGCTCCTGGCA 29192 28 96.4 32 ..A......................... TTTCCCCGCGAGGCATAGCAGGGATATCTTGT 29132 28 100.0 32 ............................ TACAAGCAGATCGGCGAGCTGAGCGGCAAGGA 29072 28 100.0 32 ............................ GTGTGTGCGGCCAGCTCGGACCCGAACTTGAT 29012 28 100.0 32 ............................ ACTGAAAGACTCAGAAATCGTGCACGCCTTCC 28952 28 100.0 32 ............................ GGCAATCGCCGCGTCGATATCTTCCGGGGTCA 28892 28 100.0 32 ............................ CATGGTCGTCACCAGTACTTCTTGGGGCGGGC 28832 28 100.0 32 ............................ TCGTACTGGTCGAGATTTCCGATTCGGAAGCC 28772 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================= ================== 23 28 99.8 32 GTTCACTGCCGTGTAGGCAGCTAAGAAA # Left flank : GACATGTGTCCGCGTAGCGCCACCCTGTACGTGGACACCCATGCACTCCCCACGCACTTGTTCGACAACGCGAAAGTGCGCTTGAGGTCGGCGATCAACATCCTGGCCATGACCCGTTTGCTCGATGAGAAAGAAGAGCCCGGCGGCACCCTGGCCTACATCAACGGTGCGTTGCTGTCGCTGCTCAGCGATGCCTTGTCCGAAATCGAGGCGGGCCACCCGAGCCTGTAGCGCCGCTCCCTGGCGCGACGCCCCCGGCCTGGCCGGGGGCTTTGCGGCATCGCCATCACAAGACCTTTCGCGCCCGAACGGCACGCTTGATCGCCGTCCCGGTCCTCGCGAAACGGCCGCCAATTGCCCGAAACTTCCGACCCTTTTTTCGGACGATTTCTTACGCCCTTATAAATCAGCAAGTTACGAGGCCTCGAAAAAAGAGGGTTTCTGGCGGGAAAAACTCGGTATTTCTTTTTCCTTCAAATGGTTATAGGTTTTCGGAGCTA # Right flank : CTCGAACCCACCTCGGCCACAACAGCCGCCGGGTTCGCTGCCGTCTAGGCAGAACCACCCTCCCCATCCCACTACCAAACATCCGAATATAAAGTTCCTACCCCGCCCGCCAGCCTCGCCCGTCCACGACAATGTGCCCCGCTTGGAAGCTCACGCTCCTCATACAGACGAAAACGGGGTAGCGGCAATCGGCCATATCCGCTAAACATTTGCCTTGGCGCAGAATTCGATAGATCCGATAGGGACAGGCCACGGTCAACATGGACGACATTTCTCCCAGCGAACTGAAGTCGATCCTTCACTCCAAGCGTGCCAACCTGTACTACCTGCAACACTGCCGGGTACTGGTCAACGGCGGGCGGGTCGAGTACGTCACCGACGAAGGCCGGCATTCGCACTACTGGAACATCCCCATCGCCAACACCACCAGCCTGTTGCTGGGCACCGGTACTTCCATTACCCAGGCAGCCATGCGCGAACTGGCCAGGGCCGGGGTATTG # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTGTAGGCAGCTAAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGTGTAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [31.7-60.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //