Array 1 177542-173729 **** Predicted by CRISPRDetect 2.4 *** >NZ_JADZHR010000043.1 Shewanella algae strain 28011 28011_43, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 177541 29 100.0 32 ............................. TAAACGTGTCGGTGCCGTCGAGCGTTGCAAAT 177480 29 100.0 32 ............................. TCACCAATTCTTATTGGAATACTATGTATAGT 177419 29 100.0 32 ............................. TCAGCTGGTGTCGCTGCAAACTCAGCAAAGAT 177358 29 100.0 32 ............................. CTCAAAAAATCCAGGCTTTTTTTCTGGCTTGA 177297 29 100.0 32 ............................. TCCTGCGACCTGGTTTGCTGCACCACCTGCAC 177236 29 100.0 32 ............................. TTCAAATCTGTGTGGGTAAGAGTGAAACATCT 177175 29 100.0 32 ............................. TCATGGTGTTTGCTGCTATCGCTAATTACCTG 177114 29 100.0 32 ............................. CTTAGCACCATGGGGCACCCAACAAATGAGGA 177053 29 100.0 32 ............................. CCTACACAGTATCACCATATTTTCAGTATTTA 176992 29 100.0 33 ............................. CAAACAATAATCGACTATCAGTATAATGTCAAC 176930 29 100.0 32 ............................. TATAGGTGACGCCGCGCTAGAGTGGAGACGGT 176869 29 100.0 32 ............................. AATGCAAATTCATCATGCCGGAAGCTCATGAA 176808 29 100.0 32 ............................. CAGCCTGAATTCCTTGCGCTGCTTGGCTGTAG 176747 29 100.0 32 ............................. TCGTGTGCCCACTCGACATGACCCATGTTGAC 176686 29 100.0 32 ............................. CACCAGCAGATCAAAAATTGTGCGCGGCTTAG 176625 29 100.0 32 ............................. ATCACAGCGACGCGCACCACGCCAAACAAGAC 176564 29 100.0 32 ............................. CGGCTGTACAGTCAGAAAACCGGGGTCGCGTC 176503 29 100.0 32 ............................. CGGCCAACCTCGCAGCGTCCGGTGTACTGGAC 176442 29 100.0 32 ............................. GCGCTGCGCAGGTACCTGACAGGCCTGTCAGA 176381 29 96.6 32 ............................A GCTGCGGATCGACCAGTACATGATGCCCATGT 176320 29 100.0 32 ............................. ATCATCACAGACGACCCCGCCTACCCCGGCGG 176259 29 100.0 32 ............................. CAGGACGGCTGGTCGCGTCAATCCGAATACAA 176198 29 100.0 32 ............................. CCCTCATGTACCCGTTAACGGGTACGCTTTTT 176137 29 100.0 32 ............................. GTTTTGCCGTTGGAAAACATCTTATCTTCCAA 176076 29 100.0 32 ............................. TGACTGATAAACATGCCGAGGAAAACGATGAT 176015 29 100.0 32 ............................. TTTACGAACAATCACGGCCTCCCCCTTAACAG 175954 29 100.0 32 ............................. CTTGAGGAACCATAGCTCACCCCCTTAGCCAT 175893 29 100.0 32 ............................. CTGAACATCCTCCAGGCCACCAGCGTTACCCG 175832 29 100.0 32 ............................. CCACATTGACTTGTTGAATCTTGGCCGATCTC 175771 29 100.0 32 ............................. TATTCGCCAATGTCACCCACAGATCACCTCTT 175710 29 96.6 33 ............................A ACTCTTGCGGGTTTTCAACCTTTTCAAGTGTGC 175648 29 100.0 32 ............................. TTCGGCGCCCAGATTGCGGCGGGACTGATGGA 175587 29 100.0 32 ............................. GAGAACTACAGAACGGATATGGTAACTGGAAT 175526 29 100.0 32 ............................. CGAGGTGATTCCGTCTTGACTCTGGAAAGATA 175465 29 100.0 32 ............................. TAGTTCCTCTTAACCTGATTGGTAATGATGAT 175404 29 100.0 32 ............................. GAAGCTATGGCTACCAACTCTGAACTGGAAGA 175343 29 100.0 32 ............................. CAAACATAGCAGGGACAACTGCTGCTGGAGTT 175282 29 100.0 32 ............................. GTTTTGCTGGCGAAAACCCTAATCTGGACGAG 175221 29 100.0 32 ............................. GGAATGGGCCGGGGCAATGCAATATTGGTTTG 175160 29 100.0 32 ............................. ATAATCCTGGCAGATTCAGATGGGGCCAAAGC 175099 29 100.0 32 ............................. GATTCAACGAGCTGCAGACACGTCTGTCATGG 175038 29 100.0 32 ............................. TATTCATCAATGTACACATGGCCATGGTATGA 174977 29 100.0 32 ............................. CCGTGTTTGCCCTGCGCAATAACGGCATACAG 174916 29 100.0 32 ............................. CTGCATTGGTCTAGCGTAATCCTGGGCAAAGG 174855 29 100.0 32 ............................. CTTGCCGGATGGCGTAACCGGCACCAATTCAA 174794 29 100.0 32 ............................. GTTTACGTTTTAGGTAGCACGTTGATTGAATG 174733 29 96.6 32 .A........................... CCGCTATCCACCATGCCAGCGCCCTGGCTGAA 174672 29 96.6 32 .A........................... CATCCTGCTGTTTGCTATATTCGTAAACTGAA 174611 29 96.6 32 .A........................... CCATGGTGGACTACAACGCCAAGCTAGGCGAT 174550 29 96.6 32 .A........................... CTGCGCCTCACCAACTCGGCCGACAATGTGAT 174489 29 96.6 32 .A........................... ATTCATATGTTCCACCTAATAAATGGCCTGCA 174428 29 96.6 32 .A........................... CTCATTGGCTTTTCGGGTGAGTGCAGACACTC 174367 29 96.6 32 .A........................... CGCCTCAGCTCTATCCATGAACACGCCATACT 174306 29 93.1 32 .A............T.............. TTTATCCACATCGACATTGACGACTCGCTGCC 174245 29 89.7 32 .A............T...........T.. GAATAGCGAACCATTTGAGGATGTTGTCGCAA 174184 29 93.1 32 .A............T.............. GTTAGATTGTTGAATGATGGTGGTTATATTGG 174123 29 93.1 32 .A............T.............. CGTTGACAGAATAAATGAGTTTCGTGGTTATG 174062 29 96.6 32 .A........................... ACGGAGAGTAACAACGTGGAATTTGATTACGA 174001 29 100.0 32 ............................. TATTACGGCCGTAACACTGCTGTAGGTGTGCT 173940 29 100.0 32 ............................. TACTACAACGGGCAGGGCTGGATAGTCGGGAA 173879 29 96.6 32 .A........................... TTACCGAAGAAGAGTTCAGAGCAGGGTTTTAT 173818 29 93.1 32 .A.......A................... ACTTTTAGGAAAGCCGAGGAATGTTGGTTCCT 173757 29 89.7 0 ......................C...GT. | ========== ====== ====== ====== ============================= ================================= ================== 63 29 98.6 32 GTGTTCCCCGCACCCACGGGGATAAACCG # Left flank : GGTACTGGCAGCCGGTGAAATTGAGCCGCCTCCAACTCCAAAGGATGCCCAGCCCATTGCTATACCAGAGCCGAAACCGTTGGGAGAACAAGGACACAGGAGCCAGTAACTATGAGTCTGTTGGTTGTGGTGACCGAAAATGTACCGCCTCGCCTACGTGGTCGTTTGGCCATCTGGTTACTGGAGGTGCGTGCCGGGGTTTATGTGGGTGACACCTCCCGCAAGGTGAGGGAAATGATTTGGTATCAAATCAGTGAATTGGCAGAGGAAGGCAATGTGGTGATGGCCTGGGCCACCAATACAGAGTCAGGATTTGAATTTCAAACCTTGGGTGAGAATCGTCGTATGCCGGTGGATTTGGATGGTCTGCGACTGGTCTCATTTTATCCAACTGAAAAATAACAAAATATTGCTCTTTAACAACTTGGAATAATAGCCTAAAAAGTTGGTGAATATTTTTAAGTGAAAAATCGCTTAAAAAACAATAGTATTTACCAAGA # Right flank : TATTTCTTTACTGTACAACCCCAGCAAAATCCGAACGTCCTGCATTTGTGGGGCTGAAGAGGCCGAAACTGAGGAGATCTAAATAGCGGCCCGGCTCAAGGCAGCATATCTACTCGAAGTAGTCTGCTGGCGCTGCGGCCTTTGTCGTCGCTGACCGATAACTGGAAGCGTCCGGCTCTGGGTGGGCGCCATTCCAGGGTTTGTCCCGGCAGGCTCTGGCCGAGCAGGCTGTTACCGGCAAACCAGTAGAGTATTTGGCTGTCGGAGGCGGCGTCGGCCTTGAGGGCGATGTGCTCATTGGCCACGCTTTGGCGCAGGCTGTAGGTGACGCCTTTCAAGGGAGAGCGGATAAGCGGGGCCGAGTAGCTGACCGCGACTCTTTGGCTGCAGGCGGCCGGAAGCTCCGGCGGCCTCCTGCGGGGTAAACCTGCCTGCTCGAACAGGGCCGCCAAGTCTGACGGCCAGAAGGCAAACACCTCCTGGTGGTGAATTGCCGAGTC # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCACCCACGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,6] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGTACCTACGGGGATAAACCG with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-10.00,-9.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [12-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [55.0-76.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //