Array 1 185878-186309 **** Predicted by CRISPRDetect 2.4 *** >NZ_LT854705.1 Levilactobacillus zymae strain ACA-DC 3411 chromosome I, complete sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 185878 36 100.0 30 .................................... ACAACCTTAAATAAACCAGCAAGGTTCTTA 185944 36 100.0 30 .................................... ACCGGTTCAAGTAAGGAGGTGGCGGCATGA 186010 36 100.0 30 .................................... GGCACCCAGTACGCATGCGTCTGGACAGGG 186076 36 100.0 30 .................................... CCAAAAAAGGGGCGATTGCTCTCTTTGCTA 186142 36 100.0 30 .................................... CGGCGCAATGGCTAGACAAGAACCGGGCTA 186208 36 100.0 30 .................................... TTGGGCCAGCTGGTCCTACGGGTGCCGACG 186274 36 75.0 0 .......................A.TA..T.TGTAT | ========== ====== ====== ====== ==================================== ============================== ================== 7 36 96.4 30 GTTTTAGATGAGTGGTAAATCTAGAAGGTCAAAAGC # Left flank : GAGTTGGATTTAAATGCGGTATTTCAACGGAAACTTCAGGTACAGTTGTTGAAAGTCTTGTCTGACCAGCAGACTGTCCAATTAACGGATCAATTTCAACAATTATTGACACAAATTCTGGGGGATAGTTATGCTTTGGATGTGCCGTTGGGGATTCCGGAGACGCCCGAACTAGCGAAATTAATGAAATTCAGTGGCCTCAAGATTGACGGCATAGCCGATATGGGGATTCATGGTATACTGGAAACGTTAATTAAGGTACTAGTTGAATTAAACGATCGGCACACGGTCGTGTTGACCAATGTTAGTCACTACTTACAGGTCGCTCAATTTAAATTATTGAGTAAAGCGGTGGCGGACGCAGGTTTACCACTCCTTATCATTGAATTCTCAGAAATTCGTCGTCAGCGATTGTTTGCAGATTGTGACTATCACTACATTGATAGTGACTTTGTTCTCTGGTAGCTGATTTAGTATGAGATAACCATTATAAAACAATG # Right flank : TCAATCAAAAAGTCTTAAAGTAGTTCTGACTCTAGACCAAACGAAAGTCCCGCACCGATTTTGAAATGCGGGACTTTCGTTTGGTCTAAAACGTTAACTCGGTTGATACGCCTGCGCCACCTCTTCGGCCGTGGGGTAGGACTTTTGCGTCCCACGCCGGGTGACCGTTAGCGCCGCATAAGCGTTGGCGTGGTGCAGTGCGGTCGGTACGTCCTCACCCTGAGTAAAGTAGTGAGCGAATGACCCGATAAACGAGTCGCCAGCCCCGGTAGTGTCCACGGCTTGGACCTTGATGGCGTCAATCAGCTGACAGTCGTTGGCGCAGACCCACAGCACACCCTTGGCGCCCAACGTGACCAGCAAGTTTTTGACGCCCAGGTCGATCAGGTGGTGGGCGGCGGCCTTGATTTCGGTCAGGGTCGTGGTCGGCATGCCGGTCAGCGTCGCCAGTTCCGTTTCGTTCGGCGAGAAGAAGTCGACCCGACTGACGTGCGTTAAGT # Questionable array : NO Score: 3.08 # Score Detail : 1:0, 2:0, 3:0, 4:0.82, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGATGAGTGGTAAATCTAGAAGGTCAAAAGC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:63.89%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-2.20,0.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-9] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [68.3-60.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0 Confidence: HIGH] # Array family : NA // Array 2 378131-378524 **** Predicted by CRISPRDetect 2.4 *** >NZ_LT854705.1 Levilactobacillus zymae strain ACA-DC 3411 chromosome I, complete sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 378131 29 96.6 32 ............................T ACCCCCGTCGACTTCGTCAAACGCCTTATCTG 378192 29 100.0 32 ............................. AACTTTTTTGCCAGAAGCTACAGCAGATTTAA 378253 29 96.6 32 ............................T TGGTGACGCTATCGGTTATGCGGTTGCGGTTT 378314 29 100.0 32 ............................. GATGCGCAGACCGGCCCCCGTCAGGAACTTGT 378375 29 100.0 32 ............................. TCCTCGAAGGGTAAGGCCAGTGTGAAGGCTAA 378436 29 96.6 32 ............................T ACTGTGATTTATTCGAGTAATCATATTATCAA 378497 28 82.8 0 ............C..........-C..AA | ========== ====== ====== ====== ============================= ================================ ================== 7 29 96.1 32 GTATTCCCCACATGTGTGGGGGTGATTCC # Left flank : ATGAAGATCTACCCAGTTTACAATAACGTCTTTAACGATTCGGCCTTAGCCAAGCAAAAGGGCACCACGGCTGACATCAGTAACCGGCGGGTAACCATCACCCACCGGGCCTACCGGATCGATTCCAACGGTCACCAGACGGTTTACTACCAGATGGAAAACGGACTGTGGACGCGGGCCAGTGCGTTTGATTTGAATAGCTAATATAAAGCGATTGAGCCGCTATAAACTGCGACTCTAAATCATGATTAGGTGTCGTTGGTGTTGAGCCAGCGACACTTTTTTGTCGTGGTGATTAGGATTGAAAAATAGGATAAGTGGCTGGGCGTTCTGTGGTTAAAATTGGGGACGTCAACCGGAATTATGCTGTAGGCGGTCTTGTTGAAATCGTTAACGACTATTGATAAACTAAGTACCGGAATCATATATATTAAAAGCAAGTTAATGAAAATACGTAACTGGTTAGTTTTCAAATGGCTTGATACCGGGATTTGTTTAGT # Right flank : ATAATCAAATTGAAAAAGTGGCTCTTTGTCGACCGGTGTTGATGAGGACTATTATGAGGATCCAATTCATTTACGAATTGGATTTTTTTGACTTTGATTTTAACGGCGTTCTCCTCAAAATTTGATTCTTTGGCCCCAACTTGATATCGATCAATTTTAAGCCGGGGGTTTACCGATATACTAGGGTTTGTCATCACGGCGGAAACAACGATTTGAGGCAAGTCATTGGCGGACTGGCTTTCAATTGAGCGCATCTTCAAGAAAACTTCACGTTTCCGGCAAAAAGTCCTCTGATTCGCCTGCTAAAGTGGGGGTATAGCCTTGAGAAACCCGATTTTTTCAATTAAAAATTGAGAAAAGGTTAAAAGGTCAGTAAGTTAAGACTAATGGGTTTCATCATTGCCGATTGTGGTGTACAATTATTAACATAAATTAGCACTCAAACAGAAGAGTGCTAAAATCTCAGGTACCTCATCGACAAGCACATCATTGGAGGGCGA # Questionable array : NO Score: 5.91 # Score Detail : 1:0, 2:3, 3:0, 4:0.80, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.85, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTATTCCCCACATGTGTGGGGGTGATTCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,9] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTATTCCCCACGTATGTGGGGGTGATCCT with 93% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-11.50,-10.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [66.7-61.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 3 816550-816699 **** Predicted by CRISPRDetect 2.4 *** >NZ_LT854705.1 Levilactobacillus zymae strain ACA-DC 3411 chromosome I, complete sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 816550 28 100.0 33 ............................ CAGCTGGTGGGCCAGATGACGGCTCAAATCGTC 816611 28 96.4 33 ........T................... TGCCCGAGGAAATCTCGAACGCGAGCTTACTGC 816672 28 92.9 0 .........G..T............... | ========== ====== ====== ====== ============================ ================================= ================== 3 28 96.4 34 GTATTCCCCACACGTGTGGGGGTGATTC # Left flank : CAAGCACCTCTGGCGAAACGCCGCGTACTGGTTGCATTCTGAAGACACGGACCGGCTTCACGCCGAGAGTAACCTGATTGAACGGCAAACGGCGAAGGCGGCCATTAAGACCTTGTCGCAGTACCTGTCACGCACGGACGTGGACGAAACGCAGTTCGATAACCAGGCGATTTACCACCTGATTGTCCACTACCGTAACCGGATCGAGCGGGCCAAGGCGGCCGCCGCACCGTCACACGAAGAGGAGTACCAACACCAATTCAATAAATTGCGGGTCCGGGCGTTGAGCGCCGAACGGACGGGAATTCAGAACCTGCTTGAGGCGGGCAACATTTCTTGGGCCATGGCGTCGCGCTTACGGCAATACGTCAATTATGCGGAAAACGTGTTGGTGATGTCCTTGAGCAGTGACGAGGGCGATTAATTGTTCCATCGTTGTCAAGTTAATAAAAAACGGTGATTGGTGCAATCCTAAACGTTGTTAGACCGGGATTCGCTTA # Right flank : CCCAGCTCGGCGCCAGATGCTATCTGGCTAACTGGTATTTCCCACACCTGTGGGCATCAAAATAGCACCAAAAAAGAAGCCATCAGCGAAATTATTCGTTGGTGGCTTCTTCGTTTGTCATTTAAATGGTGGTGGGTTTCTGCGCCGTCATAATCAGGTGTAAGATCCAATAACAGAAGAGCTGGATGAACGTCATCAGAATCACGAATATCCATAAATCATTCGTCCACATGTTCATTAAGGGCCTGATGAATTGCTCCGGATTTAAGAACAGGTAGATGGTATGGATGCGGAGAAAGCGGCCGATGTAGACACCGACCGACGATAGGAAGGTCAACGTCAAAACTACGAATAACCGGACGATGTTGTTTCCGCGAGCCAGCCGCTCCGAGATACTTTGACTCACAAAGTTGAGACTCCAGAAGCCCAGGAACGCACAGAACAGGGCGCTGGTAATCAGGTAGGTGAAGTAAATCCAGATGTGAGGCGTGACCCGCAAC # Questionable array : NO Score: 5.49 # Score Detail : 1:0, 2:3, 3:0, 4:0.82, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTATTCCCCACACGTGTGGGGGTGATTC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched CTGTTCCCCGCACGTGCGGGGGTGATCC with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [55.0-45.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.18,0.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 4 845372-845633 **** Predicted by CRISPRDetect 2.4 *** >NZ_LT854705.1 Levilactobacillus zymae strain ACA-DC 3411 chromosome I, complete sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================================================================ ================== 845372 29 100.0 33 ............................. CCCCGGCCTTAATTGCCTTGACCGCTTGACTGA 845434 29 100.0 32 ............................. ATCCCCGTCTTCTGGGTCTTCTGTTTCCATGT 845495 29 96.6 80 ............................C ATTTCTAGTTTTAAAAATTCACTGGCTTCCATGTATTGGGGTGATTCCGCGTAAGTTGCGGGATGGCGCCTATCGCTTCT 845604 29 86.2 0 ............T....A......C...C | T [845628] ========== ====== ====== ====== ============================= ================================================================================ ================== 4 29 95.7 49 GTATTCCCCACACGTGTGGGGGTGATTCT # Left flank : AGAAAAGCGTAAGTTTCAAATGATCACGTGGCGGGCGCAAAAGCACGGCGCGCAGGTCGTTGTTGAGGAGCGCATGCGGCAATTCACAGCAACGATTGCTGAACAGGAAGCCATTATGCTGGCGGCGCAAACCCGTCGTGCGGTGGTTCCGGTAGGATAGATAGGTTGTCAGGAAGGTCCCGGTAAAGGGGGCAACGACATGAAGCATCCAGGAATGTATTATGTTTATTACACCTGTGGCTGGCTATTTATCGCCATCATGCTGGTCGCAATTTATCACTTAGGCATCGTTTGGATCTCCGCAAGTCATATGTAGAAGTCGTAGAAAAGAGCTGAGGCGTTCTCGTGCGGGAACGTCTTTTTTTGACGAAAAATGAGTTACTGGGGATGCCGAAATTGAAATTTTTAGGGGGCCTTGGTAGACTAGAAATTGAAATGAAGTTAATAAAAAACGGCGGTTGGCGAATTTTAAAAGGCCGTAGCACCGGGACTTCTTTAGT # Right flank : CCTTAAAGATAATTATTAAAAATAAAGTCACGATTCATCCGCCGCATTGGCTAGTGAATCGTGACTATTTTTAAGTAGACTTTAAGTTGATTCTCGTAATCTTATGGGTGAGTTAACGAAATCAGCACACAAAAAAAGCTAGTTACGCACGAACGCAACCAGCAGAATAGAAGTATGTGTACGGTTTAATGGTGTTAATAATGGCTAAAGGTCAATTAACTCCTCCAATAATCGCAAAACCGTGGCAGACTCTCACCTGAATATGTGACTACATTATAACGTGAGATTCCGTGTCTGTAAACCACTTTTTAAAGAAAATCTTAAAGCCACCACCCCAATAATAACAAGAGGGTGAGCAGGGCCGGGAAGCCCTGTAACCAGAAGATGGTGCGCTTGACGGTCAGACTCCCGAACAGGGCCACCACCACGATGTAGAGCAAAAGTAGCGCAGTGGTCAGGTGTTGGGCGGTTCCGGTTAATAACCACTGACTCGCCAGGAT # Questionable array : NO Score: 4.05 # Score Detail : 1:0, 2:3, 3:0, 4:0.79, 5:0, 6:0.25, 7:-1.59, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTATTCCCCACACGTGTGGGGGTGATTCT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,8] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTATTCCCCACGCATGTGGGGGTGAACCG with 92% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-11.50,-10.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [56.7-65.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 5 901606-901938 **** Predicted by CRISPRDetect 2.4 *** >NZ_LT854705.1 Levilactobacillus zymae strain ACA-DC 3411 chromosome I, complete sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 901606 28 89.3 33 CA.............A............ TAAGCTTCATCCTGCAGGTCCGAAATGTAATCA 901667 28 96.4 33 ...............A............ TATCATCAGCCATTTCTAACCATTGAGTTGTTC 901728 28 100.0 33 ............................ CTAACCCGGGTACGCTACACACGTCTTTTAAGC 901789 28 100.0 33 ............................ CACGCAATTCACGTTTATTTTTGGTGAAGGTCA 901850 28 92.9 33 .C.................A........ TGATACAATTAACACGGCGTGACCTAGCGTCCT 901911 27 82.1 0 ..............C........CCG.- | T [901932] Deletion [901938] ========== ====== ====== ====== ============================ ================================= ================== 6 28 93.5 33 GTGTTCCCCACAGGTGTGGGGGTGATTC # Left flank : TATAAAGTCATTTCTTCTTTCCAATCGACTTGGGCCGATAGGCCCGGCGTATGTTCAACACGAATAGTTGCTTTATGAGTTCGTTCCTTACGAATACTGGCACAGTATTCTCGAACGATAGTGTACTTTCCCTGAAAGCCCCGTTTCTGAATGAATTTGTAAATGGCCTTGGCAGAACAATGTAGCTCTAGTTTTTCCTCGATAATGCTTCTATAGCCATCCAGTAAGCTAGGCCGTTTATGTTTGATCAAGGGCAGGGTCATACTCCCTTGGGCCTCCTCATATGCTCTCTTAGCTGTACGATAATCTACCCCAAACTGTCTTCCAAGAGCCGTAAAATTAGGCTTGATATCATTATTCACGTACTGTTTCACTCCTTCGCGGACATCATGTCTCACATTGAAAACCTCCTAAAGTCAATGTGATTCATAATATCAAAAAATGTAGGAAAACCGACATTTTTACGCCGCCATTTTCCTACATTTTATAACCGCCATGCA # Right flank : TCCATATTATGTTTTTCCTTAAGATAACTGTTCAATGCTGACGGTTATCTTTTTTATTATGTTGAAAACATTCTTAAATCAAGTTACAGGTATGTGTCACCGTTAAGCTAGCTTTAAGAAAGTGTAGTCAAAATAGTATTTCATACAGCTAACCGTTTTCACTAACTAGAGACCTGAACCTACACAGGAATCCAGCTCATAGCTGGCTACCGCTAACCCAGCGATTAACGGGTCGTCTATTTTCCTATATGAAACCTTAAAGAGATTAAGGATTTGCTACAGCCGGTTTTTACCGGATTTTCTTTGCTATACTAACCTCGTTCGTTAGAACAAAGGCATTTATATCAAGGAGGATTTTTAGTATGAAATCAAGCTTATCCAAGTCATTATACTTAGGCTTAGCGGCTTTAAGTTTTGGTGCCGTTGCAACGGTGGCCACCACTTCAACCGCCAGTGCCAAATCTTACGCTACTGCGGGTGCGTACCAATCACTGACCACG # Questionable array : NO Score: 2.63 # Score Detail : 1:0, 2:0, 3:0, 4:0.68, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCACAGGTGTGGGGGTGATTC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,8] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-11.50,-10.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [4-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [60.0-73.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0.64 Confidence: LOW] # Array family : NA // Array 6 1224764-1225036 **** Predicted by CRISPRDetect 2.4 *** >NZ_LT854705.1 Levilactobacillus zymae strain ACA-DC 3411 chromosome I, complete sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 1224764 29 100.0 32 ............................. GACGCGACCAGCGGCCCGCACGAAGAAGCTAT 1224825 29 100.0 32 ............................. GTGGTAAAATTGCTGGTTCAGTTCGTCGGTAA 1224886 29 96.6 32 ............................T GCTTGATGGTGGGTCGGCTAAAGGGACTAAGG 1224947 29 100.0 32 ............................. GGCCATGAACGCTTCCTGTGGAATATCCACGC 1225008 29 82.8 0 ........T...C..........A.AC.. | ========== ====== ====== ====== ============================= ================================ ================== 5 29 95.9 32 GTATTCCCCACATGTGTGGGGGTGATTCC # Left flank : TCGAAATTCCGATTCAGGCGGCCATTGGGGCGAAGATCATCGCGCGAACGACCATCAAGGCCTACCGGAAGGACGTTACGGCGCACCTGTATGGTGGGGACCGTACGCGGCGGATGAAGCTGTTGGAGAAACAGAAAGCCGGGAAGAAACGCATGAAGGCCGTGGGCCGTGTGGATATTCCGCAAGAAGCCTTCATGGCAGTTTTGAAGACGGACGAGGACGAAACCAAGTCATAAAATATAATGAGGAAGGGATTCTGTTTTAGCTGGTTAAGTCTGGCAGTGAGAACAGAATCTTTTTTAGTAGAGGTTTGGTGTCAAATCTATTTAACATAACAAAAGTTATATTAAGTTAAGCTTGAATTTGCTCTGAATAACCTTGACGCTTGCAAGCATCAAGCGAGCTTAGTAAACTGTATTTAAAAGCGCTGCTCCGATCAAGTTCATGTAAAACCGAGAATTTTGAATTTTGAAATGCCGGTATGATGGGATTTCTTTAGT # Right flank : CTAATTGTTATTATCATCCTTCTCGACGCAGATGATTTCAGATAATTGAGTGACTGAACCCTCCGAACGAGTTGAGTACCTAACCATGGCCCACCTTAACTAAGCTCGTTATAATGATTCTAATGTGACGGCGAACTTAGATGAGGGGGAGATTCTATGCTGGGGTATGTTCTAGGTCGTGATGGGGATATTCACGACTTTATTGAAACCTTAAAACGGGTGCATGGTAGCTTGGACGATAGCGAAATTCAATTAGTTCGGGAGTTAGTTGAATTGGCAACTCATCCCGGATATACGATTAACATGGCCGAGAAACTCAGCCTGACCTCCGTCGAGTTGAGTGACTATCTGCAACATCTCCGAGCCTGTGGATTAATTGATTATTGGGAAAAAGCTGCTAAACCGTTAAGTCTGTTATCTGAATAAAAAGAGGCCGTCGTTCGCGTGAACGGCGGCCTTTATCAATGTCGATGAATTTCTAGCGTTAGCGATCGGGGAGC # Questionable array : NO Score: 5.86 # Score Detail : 1:0, 2:3, 3:0, 4:0.80, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTATTCCCCACATGTGTGGGGGTGATTCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,9] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTATTCCCCACGTATGTGGGGGTGATCCT with 93% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-11.50,-10.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [66.7-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 7 2209574-2209360 **** Predicted by CRISPRDetect 2.4 *** >NZ_LT854705.1 Levilactobacillus zymae strain ACA-DC 3411 chromosome I, complete sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 2209573 29 100.0 32 ............................. GTGTGTCTAAGCAAGTGGCAATGAAAACGAAT 2209512 29 96.6 32 ............................T TGTACCTACTTGACGTTTTATTTTCAACCAGA 2209451 29 89.7 33 ........................GAC.. TTATCATTGGTCTATGTTTGTTGTACATGGCTT 2209389 29 86.2 0 A....T..T...................T | A [2209370] ========== ====== ====== ====== ============================= ================================= ================== 4 29 93.1 33 GTATTCCCCACACGTGTGGGGGTGATTCC # Left flank : AATTATTCTCGGCTTTTTCGTTGCCTTCCTGCCGCGATTCATTCCGCTGATGCTGTTTACCAAGCGTGAGATTCCAGAGTGGTTTAACGAATGGATGAAGTTTGTCCCCGTGTCGCTTTTCACGGCTCTGGTAGTCAAAGATGTGTTTATCGACAGTAAAAGTTACCAACTGATGTTCACCCAGGTGCCAGAAATGTTGGCCGCGGTGATCGTCATCATCATCGCGTACCGCACGCGCTCAATGGCGCTTTCCGTGATTACGGGACTGATTGGCGTGTTCCTGCTGTCGATGGTGATATAAAAATAGTAATCGTTATATCGGCATTATCCGCTTCTCAAGAGAAGTGGGTGATGCCTTTTTTATTAAAAATATAATTAATGGGGTATTCGTATCTTTGATTGAATATAGAGCGCATTGTAGGTACAATTAATGAAAACAAGTTAATGTAAAACTGCAATAGACGAGATTTAGAATGCTGCTATGACGGCTTTTGTTTAGT # Right flank : CGTTGATTGCATTAGCTGAAATTATTATCGGTCTGTGCCTGCTGTATATGGCCTTTTCCGTACTAACCGGTCACTAGAAAAAGCTTACCCACTACGCTGATCAGACGTAGTGGGTAAGCTTTTTTATGGTGTTACGGTCCGCGGCCGCAACCATTGAAAGTTAGTCAGTTACTTTATCCGTTTCGGCGTACATGTAGTCCCGCGTCATCGGCAACATCCGGGCGGAAGGCCCCTTGGAAATCAAGTATTGAATTACGTCGATGTTCCCAGATTTGAAGGATGCCGCACAGGCCTGTAAGTACAGGTCCCACATGCGGACAAACTTATCGTCGAACATCTTGGCGACTTCTTCGCGGTGTTGGTTGAAGTTTTGATCCCAAATTTCCACGGTCTTTTGGTAGTGCCGGCGCAGGGGTTCCATATCATCGATTTGTAAGCCGTTTTCGATGATGTGGGTCGTGTTTTCCACCAGACCAGGCACGTAGCCACCGGGGAAAATC # Questionable array : NO Score: 3.70 # Score Detail : 1:0, 2:3, 3:0, 4:0.65, 5:-1.5, 6:0.25, 7:0.01, 8:0.6, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTATTCCCCACACGTGTGGGGGTGATTCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,3] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTATTCCCCACGCATGTGGGGGTGAACCG with 92% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-4.90,-4.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [60.0-65.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.74,4.91 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //